mRNA_P-wetherbeei_contig18070.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18070.1.1
Unique NamemRNA_P-wetherbeei_contig18070.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: D7G265_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G265_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 2.670e-35
Identity = 70/139 (50.36%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  216 KQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW*ESFHSFRLSVSTVTFNAS*TSTVVPSGDVA 623
            +  F  Y+ +S ++T FIYP++ H+ WS GGWASA  AD+  LLF CG  DFAGSGVV   GG++ALM I ++GPR GRFNEDGT N  P+QS+VLQ+LG F+LW+GW             + FNA   S+ V +  VA
Sbjct:  131 RATFGAYVLHSFLLTSFIYPIVAHWAWSDGGWASARLADDDDLLFGCGVTDFAGSGVVHMTGGMAALMGIFILGPRAGRFNEDGTSNTMPQQSAVLQTLGTFMLWWGW-------------LGFNAGSVSSFVATPAVA 256          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: D7FR22_ECTSI (Ammonium transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR22_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 9.260e-35
Identity = 71/106 (66.98%), Postives = 83/106 (78.30%), Query Frame = 3
Query:  222 NFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW 530
            +F  Y+ YSVI+T FIYPV+VH+ W+ GGWASA+   E+ LLF CG IDFAGSGVV   GG++AL A IVVGPR GRFNEDGT N  P+QS+VLQSLG  ILWFGW
Sbjct:  147 SFNAYIIYSVILTSFIYPVVVHWGWA-GGWASAWR--ETDLLFGCGVIDFAGSGVVHMTGGLAALCAAIVVGPRTGRFNEDGTANTLPQQSAVLQSLGTLILWFGW 249          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: A0A6H5J7X8_9PHAE (Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7X8_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.550e-34
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 3
Query:  216 KQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW 530
            +  F  Y+ +S +IT FIYP++ H+ WS GGWASA  AD+  LLF CGAI+ AGSGVV   GG++AL  I ++GPR GRFNEDG+ N  P+QS+VLQ+LG FILW+GW
Sbjct:  131 RATFGAYVLHSFLITSFIYPIVAHWAWSDGGWASARLADDDDLLFGCGAIELAGSGVVHMTGGMAALTGIFILGPRAGRFNEDGSSNTMPQQSAVLQTLGTFILWWGW 238          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: D7G243_ECTSI (Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G243_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 9.780e-33
Identity = 75/123 (60.98%), Postives = 87/123 (70.73%), Query Frame = 3
Query:  222 NFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW*ESFHSFRLSVSTVTFN 581
            +F  Y+ YSVI+T FIYPV+VH+ W  GGWASA+  DE  LLFDCG IDFAGSGVV   GG++AL A IVVGPR GRFNEDGT N  P+QS+VLQ+LG  ILWFG           VST+  N
Sbjct:  151 SFNAYIIYSVILTSFIYPVVVHWGWG-GGWASAW-VDED-LLFDCGVIDFAGSGVVHMTGGLAALAAAIVVGPRTGRFNEDGTANTLPQQSAVLQTLGTLILWFG-----XXXXXXVSTLAIN 265          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: D7G888_ECTSI (Ammonium transporter (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G888_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 2.890e-30
Identity = 57/97 (58.76%), Postives = 72/97 (74.23%), Query Frame = 3
Query:  216 KQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQ 497
            +  F  Y+ +S +IT FIYP++ H+ WS GGWASA  AD+  LLF CG  DFAGSGVV   GG++ALM I ++GPRVGRFNEDG+ N  P+QS+VLQ
Sbjct:  131 RATFGAYVLHSFLITSFIYPIVAHWAWSDGGWASARLADDDDLLFGCGVTDFAGSGVVHMTGGMAALMGIFILGPRVGRFNEDGSSNTMPQQSAVLQ 227          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: W4G3J5_9STRA (Ammonium transporter n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3J5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.120e-27
Identity = 67/138 (48.55%), Postives = 92/138 (66.67%), Query Frame = 3
Query:  222 NFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW*ESFHSFRLSVSTVTFNAS*TSTVVPSG-DVA 623
            +F  Y+ Y+V +T FIYPV+VH+VWS+ G+ASAFN   + LL D GA+DFAGSGVV   GG++AL+   ++GPR+GRF EDG ++  P+QS +LQ++G  +LWFGW               FN   T T+V +G DVA
Sbjct:  157 SFVAYIAYAVALTAFIYPVVVHWVWSSTGFASAFNT-PNHLLLDVGAVDFAGSGVVHMTGGMAALVGCCILGPRLGRF-EDGQVHDMPKQSVLLQTIGTLLLWFGW-------------YGFNCMSTGTLVGNGADVA 279          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: A0A7S2QUY7_9STRA (Ammonium transporter n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUY7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.460e-27
Identity = 65/125 (52.00%), Postives = 84/125 (67.20%), Query Frame = 3
Query:  222 NFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW*ESFHSFRLSVSTVTFNAS 587
             F  Y+ YSV++T FIYPV+VH+ W+T GWASA+   ES+LLFDCG  DFAGSGVV   G V+AL+   VVGPR+GRF+E   +   P+QS V Q+LG  ILW GW     +  L++ T T + S
Sbjct:  159 TFGCYIVYSVVLTSFIYPVVVHWGWNTYGWASAWR--ESELLFDCGVTDFAGSGVVHLCGAVAALVGAKVVGPRIGRFDEGIKL---PQQSVVFQTLGTLILWMGWYGFNGASTLAIGTSTGDLS 278          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: A0A2J8A1L4_9CHLO (Ammonium transporter 1 member 3 (Fragment) n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A1L4_9CHLO)

HSP 1 Score: 115 bits (287), Expect = 3.150e-27
Identity = 57/112 (50.89%), Postives = 73/112 (65.18%), Query Frame = 3
Query:  210 RRKQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNA--DESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW 530
            R++ +F  Y+ YS  I+ F+YPV VH++W + GW SAFN   D    +   GAIDFAGSGVV   GG SALM   ++GPRVGRF+ DGT+N     S+ L  +G F LWFGW
Sbjct:  107 RQRCSFGAYLVYSFFISSFVYPVTVHWLWDSQGWLSAFNTQHDGYAAILRTGAIDFAGSGVVHMTGGFSALMGAAIIGPRVGRFSPDGTVNEMKGHSATLVVMGTFWLWFGW 218          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: A0A8J5XG33_DIALT (Ammonium transporter n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XG33_DIALT)

HSP 1 Score: 119 bits (297), Expect = 8.930e-27
Identity = 57/108 (52.78%), Postives = 71/108 (65.74%), Query Frame = 3
Query:  216 KQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW 530
            +   A Y+CYS  +T F+YPV+VH+VWS+ GW SAFNA     L   G +DFAG GVV   GG+SA+    V GPR+GR++ DG+M   P  SS LQ LG FILW GW
Sbjct:  139 RTKMAAYLCYSFFLTAFVYPVVVHWVWSSAGWLSAFNASP---LLGTGLVDFAGCGVVHMVGGISAICGAYVCGPRIGRYDADGSMVDIPGHSSTLQVLGTFILWVGW 243          
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Match: A0A7S0Q2H3_9EUKA (Ammonium transporter n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q2H3_9EUKA)

HSP 1 Score: 118 bits (296), Expect = 1.270e-26
Identity = 61/109 (55.96%), Postives = 76/109 (69.72%), Query Frame = 3
Query:  213 RKQNFAGYMCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGVV---GGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW 530
            R Q FA Y+ Y+V+ITG+IYPV+VH+VWSTGG+ S FNAD    +   G IDFAGSGVV   GGV+AL   +++GPR GR+N +  +   P  SSVL  LG FILW GW
Sbjct:  137 RAQIFA-YLVYTVVITGWIYPVVVHWVWSTGGFLSTFNADYDNTILG-GCIDFAGSGVVHMTGGVAALCGAVIIGPRRGRYNSNKELQAMPGHSSVLVVLGTFILWLGW 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18070.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G265_ECTSI2.670e-3550.36Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
D7FR22_ECTSI9.260e-3566.98Ammonium transporter n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5J7X8_9PHAE2.550e-3458.33Ammonium transporter n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D7G243_ECTSI9.780e-3360.98Ammonium transporter n=2 Tax=Ectocarpus TaxID=2879... [more]
D7G888_ECTSI2.890e-3058.76Ammonium transporter (Partial) (Fragment) n=1 Tax=... [more]
W4G3J5_9STRA1.120e-2748.55Ammonium transporter n=7 Tax=Aphanomyces astaci Ta... [more]
A0A7S2QUY7_9STRA2.460e-2752.00Ammonium transporter n=1 Tax=Triparma pacifica Tax... [more]
A0A2J8A1L4_9CHLO3.150e-2750.89Ammonium transporter 1 member 3 (Fragment) n=1 Tax... [more]
A0A8J5XG33_DIALT8.930e-2752.78Ammonium transporter n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S0Q2H3_9EUKA1.270e-2655.96Ammonium transporter n=1 Tax=Coccolithus braarudii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18070contigP-wetherbeei_contig18070:298..1378 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G265
Preferred nameamt-1
PFAMsAmmonium_transp
Model size892
Max annot lvl2759|Eukaryota
KEGG koko:K03320
KEGG TC1.A.11
Hectar predicted targeting categorysignal peptide
Exons2
Evalue3.14e-36
EggNOG OGsCOG0004@1|root,KOG0682@2759|Eukaryota
Descriptionammonium transmembrane transporter activity
Cds size297
COG categoryU
BRITEko00000,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.5867307-UTR-P-wetherbeei_contig18070:297..6561683186135.5867307-UTR-P-wetherbeei_contig18070:297..656Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18070 298..656 -
1683186135.6175044-UTR-P-wetherbeei_contig18070:1142..13781683186135.6175044-UTR-P-wetherbeei_contig18070:1142..1378Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig18070 1143..1378 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186135.5999346-CDS-P-wetherbeei_contig18070:656..8031683186135.5999346-CDS-P-wetherbeei_contig18070:656..803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18070 657..803 -
1683186135.6078973-CDS-P-wetherbeei_contig18070:992..11421683186135.6078973-CDS-P-wetherbeei_contig18070:992..1142Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18070 993..1142 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18070.1.1prot_P-wetherbeei_contig18070.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18070 657..1142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18070.1.1

>prot_P-wetherbeei_contig18070.1.1 ID=prot_P-wetherbeei_contig18070.1.1|Name=mRNA_P-wetherbeei_contig18070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=99bp
MCYSVIITGFIYPVIVHFVWSTGGWASAFNADESKLLFDCGAIDFAGSGV
VGGVSALMAIIVVGPRVGRFNEDGTMNIFPEQSSVLQSLGVFILWFGW*
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mRNA from alignment at P-wetherbeei_contig18070:298..1378-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18070.1.1 ID=mRNA_P-wetherbeei_contig18070.1.1|Name=mRNA_P-wetherbeei_contig18070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1081bp|location=Sequence derived from alignment at P-wetherbeei_contig18070:298..1378- (Phaeothamnion wetherbeei SAG_119_79)
GTGGTCAGAAACACGGAAACGGCGCCTCTTCTTCTCTCCCTTCAGTTTTT CCCTCCTTCTGCCCCCGCTGCGAATCGGTGCCGCTTGTCCTCCCTGCTTG CCTCTTCCTCTGGAGTATCCCAATCAAAACCCGAACTACTGCCCTCCCGT TCTCCGCAACTATCGCGCCTCACCAAACTGCAACCTGCAAAACGAAATTT CCCACTTAACGCCGCAAACAGAATTTTGCTGGCTACATGTGCTACTCGGT CATCATCACGGGCTTCATTTACCCAGTTATCGTGCACTTTGTCTGGTCGA CGGGAGGGTGGGCCTCGGCCTTCAATGCCGACGAGAGCAAGCTCCTCTTC GACTGCGGCGCCATCGACTTTGCTGGCTCAGGCGTCGTCCACATGGCAAG TCTCGATCGTTCTCGGCCGCTCCCATCTGTTTCGGTCCAGTCCCGTTCAT TCCCACGGAATTTTCAGCCGCCGTGCATTTCCTACAAGCTTGCCGCGAAT GGCCGAGATCTCCCGGCCCCTTGCCTTCCCTAACCCTTGTTATATGTGAA ATCGACGAACGGTTCGTCATTCCAGGTGGGCGGCGTGTCGGCACTGATGG CCATCATTGTGGTGGGGCCGCGAGTGGGCCGCTTCAACGAAGACGGCACC ATGAACATCTTCCCCGAGCAGTCATCGGTACTGCAGTCCCTCGGCGTCTT CATCCTCTGGTTCGGCTGGTAAGAGTCATTCCATTCATTCCGACTTTCGG TTTCGACGGTTACTTTTAATGCCAGCTGAACAAGTACAGTAGTCCCCTCG GGTGATGTCGCCGTAGTTTAGCTTGCTGCTTGGGGCTGACGCGATCAGGC TGCTGTTCGCTGGGTGGGCTGCCAATGATGATGATATTGCAAAGCGAAAA CAAAAGCGCCACAGAACGAAACCGTACCACGCGCCTTCGAAGGCGCCCGA ATCATACCGCCGTACAACTGACTGCGCATTTAAATCTCAAACAGGTACGG CTTCAACGGCGCATCGACGCTGTACATAAAGTCGGATGCCAACCAGATCA CGACGGCCAAGGTCATGATCAGCACGACCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18070:298..1378-

>mRNA_P-wetherbeei_contig18070.1.1 ID=mRNA_P-wetherbeei_contig18070.1.1|Name=mRNA_P-wetherbeei_contig18070.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig18070:298..1378- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCTACTCGGTCATCATCACGGGCTTCATTTACCCAGTTATCGTGCA
CTTTGTCTGGTCGACGGGAGGGTGGGCCTCGGCCTTCAATGCCGACGAGA
GCAAGCTCCTCTTCGACTGCGGCGCCATCGACTTTGCTGGCTCAGGCGTC
GTGGGCGGCGTGTCGGCACTGATGGCCATCATTGTGGTGGGGCCGCGAGT
GGGCCGCTTCAACGAAGACGGCACCATGAACATCTTCCCCGAGCAGTCAT
CGGTACTGCAGTCCCTCGGCGTCTTCATCCTCTGGTTCGGCTGGTAA
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