mRNA_P-wetherbeei_contig18047.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18047.1.1
Unique NamemRNA_P-wetherbeei_contig18047.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig18047.1.1 vs. uniprot
Match: A0A059LLB6_9CHLO (TLC domain-containing protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LLB6_9CHLO)

HSP 1 Score: 52.0 bits (123), Expect = 4.360e-5
Identity = 43/150 (28.67%), Postives = 69/150 (46.00%), Query Frame = 1 
Query:    1 VLLTYLFLDTGHMVRNWRAVGSNWPMVLHHSLFFVIVLIGVLVGQLPRFQHISFLMLSAEFSTPSLNLRWILSRGLGFRSWPLQAALSLSFALLFTMTRVAGYALLVADLYSASVWELDMAPAIRHTFAGCITVS---WLLNMYWFKLII 441
            V L Y  +D   M+R  R       MV HH +    +L+G+  G+      ++  ML  EF+TP +NLRW+L    G R   L  +  +   L +T+ R+  +A     LY       ++A   R T A C+ V    + +N+ W+  I+
Sbjct:   20 VSLGYFLVDLV-MLRVHRPYFGGVEMVAHHIMGIASLLVGLWWGEA---HGLTLGMLVTEFTTPFVNLRWMLEAA-GMRDSSLYVSNGMGLLLSWTLIRILYFAEFFPFLYRT---RHELALVHRPTAALCVAVPIVIFCMNLMWYHKIV 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18047.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A059LLB6_9CHLO4.360e-528.67TLC domain-containing protein (Fragment) n=1 Tax=H... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18047contigP-wetherbeei_contig18047:291..776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog248742.XP_005650666.1
PFAMsTRAM_LAG1_CLN8
Model size486
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons1
Evalue6.27e-07
EggNOG OGsKOG4561@1|root,KOG4561@2759|Eukaryota
Descriptionglutamate reuptake
Cds size486
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186134.6446834-CDS-P-wetherbeei_contig18047:290..7761683186134.6446834-CDS-P-wetherbeei_contig18047:290..776Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18047 291..776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18047.1.1prot_P-wetherbeei_contig18047.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18047 291..776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18047.1.1

>prot_P-wetherbeei_contig18047.1.1 ID=prot_P-wetherbeei_contig18047.1.1|Name=mRNA_P-wetherbeei_contig18047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=162bp
VLLTYLFLDTGHMVRNWRAVGSNWPMVLHHSLFFVIVLIGVLVGQLPRFQ
HISFLMLSAEFSTPSLNLRWILSRGLGFRSWPLQAALSLSFALLFTMTRV
AGYALLVADLYSASVWELDMAPAIRHTFAGCITVSWLLNMYWFKLIIGSA
VGGSGGGGARGG
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mRNA from alignment at P-wetherbeei_contig18047:291..776-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18047.1.1 ID=mRNA_P-wetherbeei_contig18047.1.1|Name=mRNA_P-wetherbeei_contig18047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig18047:291..776- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTGCTGACGTATCTCTTCCTAGATACGGGCCACATGGTGCGGAACTG
GCGCGCCGTTGGCAGCAACTGGCCGATGGTGCTGCATCACTCGCTCTTCT
TTGTGATCGTCCTCATCGGCGTGCTCGTCGGGCAGCTGCCACGCTTCCAG
CACATCAGCTTCCTGATGCTGTCCGCCGAGTTCTCGACGCCTTCCCTCAA
CCTCCGCTGGATCCTCTCCCGCGGTCTCGGCTTCCGGAGCTGGCCGTTAC
AGGCAGCGCTCTCGCTCTCCTTCGCGCTGCTCTTCACCATGACGCGCGTC
GCCGGCTACGCGCTCCTGGTCGCCGACCTCTACTCCGCCAGCGTCTGGGA
GCTCGACATGGCTCCGGCGATCCGGCACACGTTCGCCGGATGCATCACTG
TCTCGTGGCTCCTCAACATGTATTGGTTTAAGCTCATCATCGGCAGCGCG
GTCGGCGGTAGCGGCGGCGGCGGCGCTCGCGGCGGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18047:291..776-

>mRNA_P-wetherbeei_contig18047.1.1 ID=mRNA_P-wetherbeei_contig18047.1.1|Name=mRNA_P-wetherbeei_contig18047.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig18047:291..776- (Phaeothamnion wetherbeei SAG_119_79)
GTCCTGCTGACGTATCTCTTCCTAGATACGGGCCACATGGTGCGGAACTG
GCGCGCCGTTGGCAGCAACTGGCCGATGGTGCTGCATCACTCGCTCTTCT
TTGTGATCGTCCTCATCGGCGTGCTCGTCGGGCAGCTGCCACGCTTCCAG
CACATCAGCTTCCTGATGCTGTCCGCCGAGTTCTCGACGCCTTCCCTCAA
CCTCCGCTGGATCCTCTCCCGCGGTCTCGGCTTCCGGAGCTGGCCGTTAC
AGGCAGCGCTCTCGCTCTCCTTCGCGCTGCTCTTCACCATGACGCGCGTC
GCCGGCTACGCGCTCCTGGTCGCCGACCTCTACTCCGCCAGCGTCTGGGA
GCTCGACATGGCTCCGGCGATCCGGCACACGTTCGCCGGATGCATCACTG
TCTCGTGGCTCCTCAACATGTATTGGTTTAAGCTCATCATCGGCAGCGCG
GTCGGCGGTAGCGGCGGCGGCGGCGCTCGCGGCGGA
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