mRNA_P-wetherbeei_contig18027.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig18027.2.1
Unique NamemRNA_P-wetherbeei_contig18027.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A1Z8V727_9PROT (RNA-binding protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1Z8V727_9PROT)

HSP 1 Score: 139 bits (349), Expect = 3.210e-41
Identity = 70/83 (84.34%), Postives = 76/83 (91.57%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREAR 249
            MDIYVGNLSYDI+ EELRE+FEQHG+V S KI+SDR+TGRSKGFGFVEMPNQ EG AAI+ELNGAMLKGR ARVNEARPRE R
Sbjct:    1 MDIYVGNLSYDISVEELRESFEQHGQVNSCKIISDRDTGRSKGFGFVEMPNQNEGEAAISELNGAMLKGREARVNEARPREDR 83          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: UPI001C99F97E (RNA-binding protein n=1 Tax=Ferrimonas balearica TaxID=44012 RepID=UPI001C99F97E)

HSP 1 Score: 119 bits (298), Expect = 2.290e-33
Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREARPPRR 261
            M+IY+GNLSY +T+E+LR+AF  HGEVTSA ++ DRETGRSKGFGFVEMPN  EG +AI+ LN   L GR  RVNEARPRE RP RR
Sbjct:    1 MNIYIGNLSYSVTSEDLRDAFAAHGEVTSANVIMDRETGRSKGFGFVEMPNAEEGQSAISALNEQPLSGRNIRVNEARPREPRPARR 87          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A8D5AQI7_9GAMM (RRM domain-containing protein n=2 Tax=Methylomagnum ishizawai TaxID=1760988 RepID=A0A8D5AQI7_9GAMM)

HSP 1 Score: 115 bits (288), Expect = 9.090e-32
Identity = 62/90 (68.89%), Postives = 74/90 (82.22%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREAR---PPRR 261
            M+IYVGNLSY +++EELREAFEQ GEV+SA +V D+ TGRSKGFGFVEMP++A G  AI +L+GA LKGR  RVNEARPRE +   PPRR
Sbjct:    2 MNIYVGNLSYQLSSEELREAFEQFGEVSSANVVMDKLTGRSKGFGFVEMPDRASGEEAIKQLDGAPLKGRNVRVNEARPRENQGGFPPRR 91          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: UPI001967EF26 (RNA-binding protein n=1 Tax=Methylococcus sp. EFPC2 TaxID=2812648 RepID=UPI001967EF26)

HSP 1 Score: 115 bits (288), Expect = 9.930e-32
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPR 240
            M+IYVGNLSY +T++ELR+AFEQ GEVTSA +++D+ TG+SKGFGFVEMPNQA G AAI +L+G  LKGR  RVNEARPR
Sbjct:    1 MNIYVGNLSYQVTSDELRKAFEQFGEVTSANVLTDKFTGQSKGFGFVEMPNQANGEAAIKQLDGVALKGRNIRVNEARPR 80          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: E1SWH1_FERBD (RNP-1 like RNA-binding protein n=7 Tax=Ferrimonas balearica TaxID=44012 RepID=E1SWH1_FERBD)

HSP 1 Score: 114 bits (286), Expect = 1.540e-31
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREARPPRR 261
            M+IY+GNLSY +T+E+L+ AF  HGEV SA ++ DRETGRSKGFGFVEMPN  EG  AI  LN   L GR  RVNEA+PRE RPPRR
Sbjct:    1 MNIYIGNLSYSVTSEDLQAAFAAHGEVLSANVIMDRETGRSKGFGFVEMPNSDEGLKAIQALNEQPLSGRNIRVNEAKPREPRPPRR 87          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A258S871_9GAMM (RNA-binding protein n=1 Tax=Gammaproteobacteria bacterium 28-57-27 TaxID=1970513 RepID=A0A258S871_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 2.120e-31
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREARPPRR 261
            ++IYVGNLS+    EELR+ FE  GE++SAK+V DR+TGRSKGFGFVEMPN+ EG AAI  L+G  + GRT RVNEA+PREARPPRR
Sbjct:    2 INIYVGNLSFRTDDEELRQTFESFGEISSAKVVMDRDTGRSKGFGFVEMPNKEEGMAAIKALDGQDMGGRTLRVNEAQPREARPPRR 88          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: UPI000B14BF8A (RNA-binding protein n=1 Tax=Methyloterricola oryzae TaxID=1495050 RepID=UPI000B14BF8A)

HSP 1 Score: 115 bits (287), Expect = 2.930e-31
Identity = 57/80 (71.25%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPR 240
            M+IYVGNLSY +T++ELR+AFEQ GEV+SA +V+D+ TG+SKGFGFVEMPNQA G AAI +++GA LKGR  RVNEARPR
Sbjct:   28 MNIYVGNLSYQVTSDELRKAFEQFGEVSSANVVTDKFTGQSKGFGFVEMPNQANGEAAIKQMDGADLKGRNIRVNEARPR 107          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A7V3NM99_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V3NM99_9DELT)

HSP 1 Score: 111 bits (278), Expect = 2.860e-30
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREAR 249
            M+IYVGNLSY++T EELR+AF + G+V SA ++ DR+TGRSKGFGFVEMP Q+E  AAIA LNG  LKGRT  V+EARPR  R
Sbjct:    1 MNIYVGNLSYEVTDEELRDAFARFGQVASANVIKDRQTGRSKGFGFVEMPTQSEAQAAIAGLNGTELKGRTLNVSEARPRTER 83          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A1N7LVE0_9BACT (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) n=2 Tax=Filimonas TaxID=649460 RepID=A0A1N7LVE0_9BACT)

HSP 1 Score: 111 bits (277), Expect = 4.440e-30
Identity = 55/86 (63.95%), Postives = 71/86 (82.56%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREARPPR 258
            M+IYV NLS+++  E+LR  FE+HGEVTSAK++ DRETGRS+GFGFVEMP+QA    AI EL+GA ++GR+ RVNEA+PRE + PR
Sbjct:    1 MNIYVSNLSFNVQDEDLRSYFEEHGEVTSAKVIIDRETGRSRGFGFVEMPDQAAAENAIRELDGASVEGRSMRVNEAKPREEKKPR 86          
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Match: A0A2E5NKL5_9PROT (RNA-binding protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5NKL5_9PROT)

HSP 1 Score: 110 bits (274), Expect = 8.500e-30
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1
Query:    1 MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMPNQAEGAAAIAELNGAMLKGRTARVNEARPREAR 249
            M+IYVGNLSY ++  ELR+AF + G+V S KI++DRETGRS+GFGFVEM NQAEG  AIA+LNG  + GR  RVNEARPRE R
Sbjct:    1 MNIYVGNLSYSLSESELRDAFAEFGDVVSVKILTDRETGRSRGFGFVEMSNQAEGQTAIAQLNGKDVGGRELRVNEARPREQR 83          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig18027.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Z8V727_9PROT3.210e-4184.34RNA-binding protein n=2 Tax=Proteobacteria TaxID=1... [more]
UPI001C99F97E2.290e-3368.97RNA-binding protein n=1 Tax=Ferrimonas balearica T... [more]
A0A8D5AQI7_9GAMM9.090e-3268.89RRM domain-containing protein n=2 Tax=Methylomagnu... [more]
UPI001967EF269.930e-3271.25RNA-binding protein n=1 Tax=Methylococcus sp. EFPC... [more]
E1SWH1_FERBD1.540e-3166.67RNP-1 like RNA-binding protein n=7 Tax=Ferrimonas ... [more]
A0A258S871_9GAMM2.120e-3167.82RNA-binding protein n=1 Tax=Gammaproteobacteria ba... [more]
UPI000B14BF8A2.930e-3171.25RNA-binding protein n=1 Tax=Methyloterricola oryza... [more]
A0A7V3NM99_9DELT2.860e-3067.47RNA-binding protein n=1 Tax=Deltaproteobacteria ba... [more]
A0A1N7LVE0_9BACT4.440e-3063.95RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
A0A2E5NKL5_9PROT8.500e-3067.47RNA-binding protein n=1 Tax=Rhodospirillaceae bact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig18027contigP-wetherbeei_contig18027:688..951 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog550540.Fbal_2250
PFAMsRRM_1
Model size264
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.53e-32
EggNOG OGsCOG0724@1|root,COG0724@2|Bacteria,1N6VR@1224|Proteobacteria,1SCKA@1236|Gammaproteobacteria
DescriptionRNA-binding
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186133.9319134-CDS-P-wetherbeei_contig18027:687..9511683186133.9319134-CDS-P-wetherbeei_contig18027:687..951Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig18027 688..951 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig18027.2.1prot_P-wetherbeei_contig18027.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig18027 688..951 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig18027.2.1

>prot_P-wetherbeei_contig18027.2.1 ID=prot_P-wetherbeei_contig18027.2.1|Name=mRNA_P-wetherbeei_contig18027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MDIYVGNLSYDITAEELREAFEQHGEVTSAKIVSDRETGRSKGFGFVEMP
NQAEGAAAIAELNGAMLKGRTARVNEARPREARPPRR*
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mRNA from alignment at P-wetherbeei_contig18027:688..951-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig18027.2.1 ID=mRNA_P-wetherbeei_contig18027.2.1|Name=mRNA_P-wetherbeei_contig18027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig18027:688..951- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATATCTACGTCGGCAATCTGTCCTATGACATCACCGCTGAAGAGCT GCGCGAAGCCTTTGAGCAACATGGCGAAGTGACCAGTGCGAAGATCGTGT CCGATCGTGAGACCGGCCGTTCCAAGGGTTTTGGATTCGTCGAGATGCCG AATCAGGCGGAGGGCGCGGCGGCCATCGCTGAATTGAACGGCGCGATGCT GAAAGGCCGTACTGCGCGTGTCAACGAAGCGCGTCCGCGAGAAGCTCGCC CGCCACGGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig18027:688..951-

>mRNA_P-wetherbeei_contig18027.2.1 ID=mRNA_P-wetherbeei_contig18027.2.1|Name=mRNA_P-wetherbeei_contig18027.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig18027:688..951- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATATCTACGTCGGCAATCTGTCCTATGACATCACCGCTGAAGAGCT
GCGCGAAGCCTTTGAGCAACATGGCGAAGTGACCAGTGCGAAGATCGTGT
CCGATCGTGAGACCGGCCGTTCCAAGGGTTTTGGATTCGTCGAGATGCCG
AATCAGGCGGAGGGCGCGGCGGCCATCGCTGAATTGAACGGCGCGATGCT
GAAAGGCCGTACTGCGCGTGTCAACGAAGCGCGTCCGCGAGAAGCTCGCC
CGCCACGGCGCTGA
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