mRNA_P-wetherbeei_contig1798.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1798.2.1
Unique NamemRNA_P-wetherbeei_contig1798.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1798.2.1 vs. uniprot
Match: A0A835ZH34_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH34_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.780e-16
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 2 
Query:  911 RGGGA---FLKAGLPLVAFLVGGSLMLSTFVGGGVEARDRQRQARSVSARQFDIEEEHKKIMAQMDLG-DLKIVRVPRPNE 1141
            RGGG+   FL+AGLP + F+ GGSL LS  V G VE RDR+RQ++S+  RQFD++EEH+K+  Q   G D KIVR+PRP E
Sbjct:    4 RGGGSNNLFLRAGLPFIVFVAGGSLFLSYVVTGHVETRDRKRQSQSL--RQFDLQEEHRKLQQQFASGEDFKIVRIPRPGE 82
[Close]
BLAST of mRNA_P-wetherbeei_contig1798.2.1 vs. uniprot
Match: A0A421EXQ0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EXQ0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.240e-10
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  926 FLKAGLPLVAFLVGGSLMLSTFVGGGVEARDRQRQARSVSARQFDIEEEHKKIMAQMDLGDLKIVRVPRPNE 1141
            F+KAGLPL+ F+VGG + L+ FVGG  EARD     +S S   FD+EEEHKK+  ++ L D ++  VP+P E
Sbjct:   34 FVKAGLPLMLFIVGGYMGLTQFVGGKYEARDHL--IKSQSQHTFDLEEEHKKMTQKLVLDDFELKPVPKPKE 103
[Close]
BLAST of mRNA_P-wetherbeei_contig1798.2.1 vs. uniprot
Match: A0A3F2RUK2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUK2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.700e-9
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  926 FLKAGLPLVAFLVGGSLMLSTFVGGGVEARDRQRQARSVSARQFDIEEEHKKIMAQMDLGDLKIVRVPRPNE 1141
            F+KAGLPL+ F+VGG + L+ FVGG  EARD     +S S   FD+EEEHKK+  ++ L D ++  VP+P E
Sbjct:  102 FVKAGLPLMLFIVGGYMGLTQFVGGKYEARDHL--IKSQSQHTFDLEEEHKKMTQKLVLDDFELKPVPKPKE 171
[Close]
BLAST of mRNA_P-wetherbeei_contig1798.2.1 vs. uniprot
Match: A0A5D6XXA2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXA2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.580e-9
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:  926 FLKAGLPLVAFLVGGSLMLSTFVGGGVEARDRQRQARSVSARQFDIEEEHKKIMAQMDLGDLKIVRVPRPNE 1141
            F   GLPL+ F+ GG   L+ FVGG  EARD     +S + R+FD+EEEHKKI  ++ L D +I  VP+P +
Sbjct:   40 FATVGLPLLLFVAGGYFALTQFVGGKFEARDHM--IKSNTTREFDLEEEHKKITKKLVLDDFEIKPVPKPKD 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1798.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZH34_9STRA5.780e-1656.79Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A421EXQ0_9STRA3.240e-1050.00Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A3F2RUK2_9STRA1.700e-950.00Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A5D6XXA2_9STRA4.580e-947.22Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1798contigP-wetherbeei_contig1798:2409..4980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog325452.fgenesh_scip_prom.46568.9118
PFAMsNotch,Stealth_CR1,Stealth_CR2,Stealth_CR3,Stealth_CR4
Model size2012
Max annot lvl4776|Peronosporales
KEGG koko:K08239
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorysignal peptide
Exons3
Evalue5.75e-13
EggNOG OGs2CMK5@1|root,2QQMR@2759|Eukaryota,3Q89R@4776|Peronosporales
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-03_003470.1
EC2.7.8.17
DescriptionN-glycan processing to lysosome
Cds size273
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.5509808-UTR-P-wetherbeei_contig1798:2408..32551683186132.5509808-UTR-P-wetherbeei_contig1798:2408..3255Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1798 2409..3255 -
1683186132.5890152-UTR-P-wetherbeei_contig1798:3757..43911683186132.5890152-UTR-P-wetherbeei_contig1798:3757..4391Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1798 3758..4391 -
1683186132.601624-UTR-P-wetherbeei_contig1798:4722..49801683186132.601624-UTR-P-wetherbeei_contig1798:4722..4980Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1798 4723..4980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186132.5613828-CDS-P-wetherbeei_contig1798:3255..33421683186132.5613828-CDS-P-wetherbeei_contig1798:3255..3342Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1798 3256..3342 -
1683186132.571336-CDS-P-wetherbeei_contig1798:3571..37571683186132.571336-CDS-P-wetherbeei_contig1798:3571..3757Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1798 3572..3757 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1798.2.1prot_P-wetherbeei_contig1798.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1798 3256..3757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1798.2.1

>prot_P-wetherbeei_contig1798.2.1 ID=prot_P-wetherbeei_contig1798.2.1|Name=mRNA_P-wetherbeei_contig1798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=91bp
MVPPRGRGGGAFLKAGLPLVAFLVGGSLMLSTFVGGGVEARDRQRQARSV
SARQFDIEEEHKKIMAQMDLGDLKIVRVPRPNEGSNPAGK*
back to top

mRNA from alignment at P-wetherbeei_contig1798:2409..4980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1798.2.1 ID=mRNA_P-wetherbeei_contig1798.2.1|Name=mRNA_P-wetherbeei_contig1798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2572bp|location=Sequence derived from alignment at P-wetherbeei_contig1798:2409..4980- (Phaeothamnion wetherbeei SAG_119_79)
CCCCTCCGCCGAGGCTGCCGTCTCTCGCCGCCGCAGCAGGGCAAAGAGCG
GCTCGGGCAGCCATTCCAGCAGCCCGCTGCGTCTATCCTTCTCATCGCTG
CCGCTGGGGCCGTCGCTGGCGCCGCCGCTGCCGCTGGCGCCGCCACCGGC
GTTCCTGCCGCCGTTGCGGTGGGAGCCGTGAATGACCGCTTGCTTGCCGC
TGCTGACGGAGCCGACGACAACCACCAGCGCCGACACGGCGTCGTCCACT
AGGGTCCTGCAAGAGATTTTGCATTGAGACGCACGGCGACATGATGTCGG
GGATGCGATGGATTCAGACGGCTTGCCTCTTTGCTTTCCGTAGTCGTAAG
ACGCCAGGCAGCTCCTAGCCATATTTCACTTAAAGCCTTCAAATTGATTT
ACCAACATTTTCCTGCTTCGAAGAATATCATTCGCTTGTAAGGGCAACCC
TCCTTCAAACCGAATGAAGCCCAAATCCTGTTCCTTACAAAAGCAATGTT
GTCAGAACCGCGACTAGATGAAGCAAGACGACAAAAAAAGGAAGGCAGAG
CAAAGGAATCCGCAAGAGCGCATGTAAGACGCACCTCAGAGGAGCGGGTC
GGCCGCCCATGTCCGCCTCGTGGCTTCCCGCCGCGCCCATCAACTCAGCA
AATACATCGGCGTCCACTGTCCGTGCGCCGTCGAACGCAAGCTCCACCTG
GCAGGTGACGCCGTTGGCCGCGACGGCCGTGCGTCCAACAAGGTTAGCTG
CGCCCGGATGCGGCTTGTGGCCGGCCTCGCCCGAGACGCGAGCAAAAAGG
GCCGTTGGGACGCCGATGGGAGGTGGGAGCGGCATGTTTGGGACCGTGCT
GTAGTCGGTGCCTTTCCTGGGCTCGAGGTGGCGCTTCAGCCGTTACTCTC
GCGAAAAAAGACACAGGAGGGCTCAAAGTGGAACCAGACCACGTTAACAG
GCTACGTCGTCCGAAAATTCATGAAACACGAGCGTTTCGTCGGGGTGGCA
ATGCCATTTCGAAATCGATGCATCACAAGTAGTTCTTGACTTGGGAAAGG
CAGAAAGAAGGAAAAAAGAAAAAAGGAAAAGAGGACGGTGACCAGCACTG
CACCCATCAGGGACCCGCTGTGGCTTGACAAAGCGACTCTTTCTCCTCTT
GCGTGTGCCGGCTTCTCTTCCTCTTTTCTCGACCCTTCTCTTGCTGCTGG
GTTTCTTAAGCCACCTCGAGAGGATGGTGCCGCCGAGGGGTCGCGGTGGA
GGAGCGTTCCTAAAGGCCGGCCTTCCACTCGTCGCCTTTTTGGTCGGCGG
TTCGCTCATGCTGTCCACATTTGTGGGCGGCGGCGTCGAGGCGAGGGACC
GGCAGCGGCAAGCCCGGAGCGTGAGCGCCCGCCAGTTTGACATCGAAGAA
GAGCACAAGGTGAGAACCTGGCCAATTTACTATTGACAAAAGAGTTGTGC
GATGCAGAAGCAGTCGACTTGCTGGAGCTAGGTTTTGTACGCTGCCCTTT
GTGGTTGGAACGGTGGATGTTTTGAAACAAGTTTCCATTCTTCTGATGAA
CTGGCCGCTGAGAAGATTTCGGTTAGAGCTCCTTCACTCCGAGCCTGGGC
CTTACACGCCTCCTTTCCCGACTGGTGTATGAAAACAGAAAATCATGGCG
CAGATGGATCTGGGCGACCTAAAAATCGTGCGCGTCCCGCGACCGAATGA
GGGCAGCAACCCCGCCGGCAAGTGAGCAGAGAAAGACTGAGGAACGCTCC
CGCGGCAGAACCAAGTCGATTGGACATCGGCCTAGTTTCGTGCGTAAACC
TCCTGCGGACGTCAGCAGCGCTGCCCGCCATCGGCGGCCGCCGCTGCGAG
CGGCGTTTCCGATGGATTGCGAAACTACCGGCCTACCACTGCGACAGCGC
TTCGGAAAGCCCTTTCGCTTCCCGGTTTGCGCCGGCGCCCTTCCACGGCA
GAGGAGGCCAGTCGCTGAATGGAGGGGACCGAGCGAGCAAGTGCCCGCCA
CCATCTACTTGCAGCGGCAGCGGTAGTGGCTTGTCGAGGCCGTGCCTCGC
ACGGCATTTCGCAGCCGCGAACGCCCACAGCAGCCATCGCAGTCGCCGCT
GCTTGAACTCCGCCCACCGCCACCGTCAGGTTCGCAACGGGCAGCGACCG
CGTCGCAGGTACCGGCGTCTCCACGACGGTGCTGCCGCGGACGGCGGCAC
TATGTGGTGGCAGCGACGGCCAAGCGCTTCCGTTCCGCGCCTCTCCTGTC
GATAACCGGTTAGCTGATCACGAATACATCCGTGGCTCTCGACCACGAAA
AAGAGGTGCCTTGCGAGCTGTTGGGAATGGAATGGCGGCAGCAGCTCTGC
GGGACCACTGCCAAAGTCGAATTGCATTACAGGGAGGGAGCGATGGCGAA
AGACGGTCCGGCCGCATGAGGCGAGGGCGTAGGTGACGGCGAAAAGGACG
TCTGGAGGCAGAGGCAACTAGAGGACTACGAAAGTGACGCGCCCTGGCTG
ACGGTGAGAGATGAGATGAAATGAAAATGCGCAACACATGAAAGCCCCTA
CGAGAACAGCTGAAGTCTAAGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1798:2409..4980-

>mRNA_P-wetherbeei_contig1798.2.1 ID=mRNA_P-wetherbeei_contig1798.2.1|Name=mRNA_P-wetherbeei_contig1798.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=273bp|location=Sequence derived from alignment at P-wetherbeei_contig1798:2409..4980- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCCGCCGAGGGGTCGCGGTGGAGGAGCGTTCCTAAAGGCCGGCCT
TCCACTCGTCGCCTTTTTGGTCGGCGGTTCGCTCATGCTGTCCACATTTG
TGGGCGGCGGCGTCGAGGCGAGGGACCGGCAGCGGCAAGCCCGGAGCGTG
AGCGCCCGCCAGTTTGACATCGAAGAAGAGCACAAGAAAATCATGGCGCA
GATGGATCTGGGCGACCTAAAAATCGTGCGCGTCCCGCGACCGAATGAGG
GCAGCAACCCCGCCGGCAAGTGA
back to top