mRNA_P-wetherbeei_contig17935.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17935.1.1
Unique NamemRNA_P-wetherbeei_contig17935.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17935.1.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.590e-8
Identity = 36/64 (56.25%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:    1 LASQAHEQHAAFQYLCGDTDGAIATFRAAAELDPRNARARVKLAAVLADLDRKDDALAEFDAAL 192
            LA+ AHEQ A++ YL GD   A A FR AA LD R+ARARVKLA++L D+D +  AL  F  AL
Sbjct:  747 LAAAAHEQLASYLYLAGDMAAAEAGFRRAAALDARSARARVKLASLLCDMDDRAGALEWFRLAL 810
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BLAST of mRNA_P-wetherbeei_contig17935.1.1 vs. uniprot
Match: A0A521H1F0_9BACT (Tetratricopeptide repeat protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A521H1F0_9BACT)

HSP 1 Score: 48.9 bits (115), Expect = 5.530e-5
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 
Query:    1 LASQAHEQHAAFQYLCGDTDGAIATFRAAAELDPRNARARVKLAAVLADLDRKDDALAEFDAALTLA 201
            L +Q H +        G+  GA+A FRA AELDP+N  AR+++A  LA    +++ALAEF+AA  LA
Sbjct:  147 LLTQIHGKRGEALLASGNRAGAVAAFRAVAELDPQNFHARLEVATQLARHGLQEEALAEFEAAEDLA 213
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17935.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YUV6_9STRA1.590e-856.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A521H1F0_9BACT5.530e-544.78Tetratricopeptide repeat protein n=1 Tax=Planctomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17935contigP-wetherbeei_contig17935:435..635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRZ0
Preferred nameTOMM70A
PFAMsTPR_1,TPR_16,TPR_17,TPR_2,TPR_8
Model size201
Max annot lvl2759|Eukaryota
KEGG koko:K00738,ko:K17768
KEGG TC3.A.8.1
KEGG ReactionR05987
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00075
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0001558,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005742,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0008320,GO:0008565,GO:0009719,GO:0009725,GO:0009987,GO:0010033,GO:0010243,GO:0010611,GO:0010614,GO:0010721,GO:0014070,GO:0014741,GO:0014743,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016202,GO:0017038,GO:0019867,GO:0022804,GO:0022857,GO:0022884,GO:0030150,GO:0030308,GO:0030943,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0040008,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0042887,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043502,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045595,GO:0045596,GO:0045843,GO:0045926,GO:0046620,GO:0046621,GO:0046907,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048634,GO:0048635,GO:0048638,GO:0048640,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051093,GO:0051128,GO:0051147,GO:0051148,GO:0051153,GO:0051154,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051241,GO:0051641,GO:0051649,GO:0055021,GO:0055022,GO:0055024,GO:0055026,GO:0055085,GO:0060284,GO:0060420,GO:0061024,GO:0061050,GO:0061052,GO:0061117,GO:0065002,GO:0065007,GO:0070201,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090087,GO:0090150,GO:0090151,GO:0090257,GO:0097066,GO:0097068,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:1901698,GO:1901700,GO:1901861,GO:1901862,GO:1904386,GO:1904589,GO:1904591,GO:1904680,GO:1904951,GO:1905207,GO:1905208,GO:1990542,GO:2000026,GO:2000725,GO:2000726
Exons1
Evalue0.00011
EggNOG OGsKOG0547@1|root,KOG0547@2759|Eukaryota
EC2.4.1.145
Descriptionprotein transmembrane transport
Cds size201
COG categoryS
CAZyGT54
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko02000,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186131.3865623-CDS-P-wetherbeei_contig17935:434..6351683186131.3865623-CDS-P-wetherbeei_contig17935:434..635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17935 435..635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17935.1.1prot_P-wetherbeei_contig17935.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17935 435..635 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17935.1.1

>prot_P-wetherbeei_contig17935.1.1 ID=prot_P-wetherbeei_contig17935.1.1|Name=mRNA_P-wetherbeei_contig17935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
LASQAHEQHAAFQYLCGDTDGAIATFRAAAELDPRNARARVKLAAVLADL
DRKDDALAEFDAALTLA
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mRNA from alignment at P-wetherbeei_contig17935:435..635+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17935.1.1 ID=mRNA_P-wetherbeei_contig17935.1.1|Name=mRNA_P-wetherbeei_contig17935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig17935:435..635+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCATCGCAGGCGCACGAGCAGCACGCTGCGTTCCAGTACCTCTGCGG
GGACACGGATGGCGCTATAGCGACGTTCCGCGCCGCAGCGGAGCTGGATC
CGCGCAACGCCCGCGCCCGCGTCAAGCTGGCGGCTGTGCTCGCCGATCTC
GACCGCAAGGACGATGCGCTGGCAGAGTTTGACGCCGCGCTCACCCTGGC
G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17935:435..635+

>mRNA_P-wetherbeei_contig17935.1.1 ID=mRNA_P-wetherbeei_contig17935.1.1|Name=mRNA_P-wetherbeei_contig17935.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig17935:435..635+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCATCGCAGGCGCACGAGCAGCACGCTGCGTTCCAGTACCTCTGCGG
GGACACGGATGGCGCTATAGCGACGTTCCGCGCCGCAGCGGAGCTGGATC
CGCGCAACGCCCGCGCCCGCGTCAAGCTGGCGGCTGTGCTCGCCGATCTC
GACCGCAAGGACGATGCGCTGGCAGAGTTTGACGCCGCGCTCACCCTGGC
G
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