mRNA_P-wetherbeei_contig17895.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: A0A8J2UYJ7_9PROT (DNA-binding protein n=1 Tax=Siccirubricoccus deserti TaxID=2013562 RepID=A0A8J2UYJ7_9PROT) HSP 1 Score: 310 bits (794), Expect = 1.040e-102 Identity = 157/278 (56.47%), Postives = 195/278 (70.14%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER +Y L R+RR+P ++GGKWLFPR L++ W+A D+ APPP ILAGSHDPLL+WA+R+S GLA GGSLDGL+AL A AA+H++DPD+G FN PA AA+ G+ +V + WAWR+QGL+VA GNP L + DL R RI RQP+AGSH L LHLLAEA +RLD L L PA+ E E+AAAV EGRA+AGFG+ A+A G+ FVPL RERFDL M RR+YFGQ +QRLL F G R A+R+GGYD+A G + N
Sbjct: 16 LSERALYALARSRRVPAVQLGGKWLFPRGLLERWLAAQADMPGQEHRLAPPP-ILAGSHDPLLDWAVRQSGCGLALRGGGSLDGLEALARGEAAAAAIHLIDPDSGAFNEPAARAALAGRGVVGLVWAWREQGLMVAPGNPLGLASVTDLARPGLRIAGRQPRAGSHALLLHLLAEAELRLDQLGFLAEPAMAEDEVAAAVAEGRAEAGFGIRAAAAARGLGFVPLLRERFDLVMDRREYFGQGIQRLLGFTAGAGFRARAERMGGYDIAACGTVAFN 292
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI001C20BD88 (helix-turn-helix domain-containing protein n=1 Tax=Falsiroseomonas tokyonensis TaxID=430521 RepID=UPI001C20BD88) HSP 1 Score: 305 bits (781), Expect = 9.390e-101 Identity = 154/278 (55.40%), Postives = 195/278 (70.14%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER +Y+L R RR+P A++GGKWLFPR +D W+ ++ AA PPPILAGSHDPLL+WA+R+S GLA GGSLDGL AL+ A+ AA+H++DPD+G FN PA+ + GQ +V + WAWR QGLL+A GNP +R +ADL R R++ RQP+AGSHVL +HLLAEAG+ L+++ L PAL E E+AAAV E RADAGFG+ A A G+DFVPL RERFDLAMRRR YF +Q L AFAR A R+GGYD++ G + N
Sbjct: 16 LSERALYDLARARRLPAAQLGGKWLFPRAQLDRWLVAQAEVAEDAQAA--PPPILAGSHDPLLDWAVRQSGCGLALRAGGSLDGLAALQAGEAVAAAIHLLDPDSGRFNEPAVRDLLAGQPVVGLTWAWRDQGLLLAPGNPLGIRAVADLARPGLRVIGRQPRAGSHVLLMHLLAEAGLLLEAIGFLAEPALAEDEVAAAVAERRADAGFGIRAEAAARGLDFVPLVRERFDLAMRRRAYFEPALQALFAFARSTAFAARAARMGGYDISETGRVAFN 291
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI0011858740 (helix-turn-helix transcriptional regulator n=1 Tax=Elioraea rosea TaxID=2492390 RepID=UPI0011858740) HSP 1 Score: 304 bits (779), Expect = 1.950e-100 Identity = 154/278 (55.40%), Postives = 193/278 (69.42%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER++Y RTRR+P ++GGKWLFPR ++ W+A D S+ AA+PPP ILAGSHDPLL+WA+R+S SGLA GGSLDGL AL +R A+ AA H++DPD+ FN PA A + G+ +V + WAWR+QGL+V NP L +ADL R++ RQ +AGSHVLF HLLAEAG+RLD+L L PAL E E+AAAV EGRA+AGFG+ A A G+ F+PL RERFDL M RR YF P+QRLL FAR A R+GGYD+ G + N
Sbjct: 16 LSERSLYAFARTRRVPAVQLGGKWLFPRAPLERWLAAQADAASTAEAASPPP-ILAGSHDPLLDWAVRQSGSGLALRTGGSLDGLAALAERGAVAAAAHLLDPDSLTFNEPAARAMLAGRAVVGVVWAWREQGLIVPADNPLGLAGVADLAAPGIRVIGRQARAGSHVLFCHLLAEAGVRLDALALLPAPALAEDEVAAAVAEGRAEAGFGIRAEAAARGLGFIPLIRERFDLVMERRHYFDAPLQRLLGFARSEAFAARAARMGGYDIGEAGAVAFN 292
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI001BA836E7 (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas arctica TaxID=1509237 RepID=UPI001BA836E7) HSP 1 Score: 303 bits (777), Expect = 3.550e-100 Identity = 158/280 (56.43%), Postives = 192/280 (68.57%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAP--PPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ERT+Y+L R RR+P A++GGKWLFPR ++ W+A D AA P PPPILAGSHDPLL+WA+R+S GLA GGSLDGL AL A+ A H++DPD+G FN PA + G+ +V I WAWR+QGLLVA GNP L + DL R R++ RQP+AGSH+L HLLAEAG+RL + L PAL E E+AAAV EGRADAGFG+ A A G+DFVPL RERFDL M RR YFG P+Q LLAFAR A R+GGYD+A G + +
Sbjct: 16 LSERTLYDLARARRVPAAQLGGKWLFPRSRLEAWLAAQAD------AAPPLSPPPILAGSHDPLLDWAVRQSGCGLALRAGGSLDGLAALAAGEAIAAGAHLLDPDSGAFNEPATRDLLAGRGVVGITWAWREQGLLVAPGNPMALAGVTDLARPGLRVIGRQPRAGSHILLGHLLAEAGVRLAQVGFLPAPALAEDEVAAAVAEGRADAGFGIRAEAAARGLDFVPLIRERFDLIMERRQYFGAPLQTLLAFARSAPFHERAARMGGYDVAANGAVAFS 289
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI001FCADB1E (helix-turn-helix transcriptional regulator n=1 Tax=Roseomonas sp. S08 TaxID=1750527 RepID=UPI001FCADB1E) HSP 1 Score: 302 bits (774), Expect = 1.120e-99 Identity = 155/278 (55.76%), Postives = 191/278 (68.71%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER++YEL RTRRIP +IGGKWLFPR +D W+A D S + PP ILAGSHD LL+WA+R+S GLA GGSLDGL AL + AAM AA H++DPD G FN A A+P + IV I WAWR QGL++A+GNP +R +ADL R R+ RQP++GSHVL +HL+AEAGIRL+ + L PAL E E+AAAV +GRAD GFG+ A A G+DF+PLFRERFDL M RR YF P+Q L+ FA+ A +LGGYDL G + N
Sbjct: 16 LSERSLYELARTRRIPAVQIGGKWLFPRLQLDRWLAAQADAPGSALRLDPPA-ILAGSHDALLDWAVRQSGCGLALRGGGSLDGLFALAEGAAMAAASHVLDPDAGTFNEAAARDALPHRPIVGIVWAWRSQGLILARGNPLAIRDVADLARPGIRVAGRQPRSGSHVLLMHLMAEAGIRLEQVGFLSQPALAEDEVAAAVLDGRADVGFGIGAEAAARGLDFLPLFRERFDLVMERRSYFEPPMQSLIRFAQSDRFAERAAQLGGYDLRETGRVAFN 292
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI00143B1D59 (helix-turn-helix transcriptional regulator n=1 Tax=Falsiroseomonas frigidaquae TaxID=487318 RepID=UPI00143B1D59) HSP 1 Score: 302 bits (773), Expect = 1.440e-99 Identity = 151/278 (54.32%), Postives = 191/278 (68.71%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER +Y+L R RR+P ++GGKWLFPR + W+A+ + PPPILAGSHDPLL+WA+R+S GLA GGSLDGL AL AA+ A H++DPD+G FN PA+ + G+ +V I WAWR+QGLL+A GNP + R+ DL R R++ RQP+AGSHVL +HLLAEAG+RL+++ L PAL E E+AAAV EGRA+AGFG+ A A G+DFVPL RERFDL MRRR YF +Q L FARGP A R+GGYD+ G + N
Sbjct: 16 LSERALYDLARARRLPAVQLGGKWLFPRARLAAWLAEQAEARE----VPTPPPILAGSHDPLLDWAVRQSGCGLALRAGGSLDGLAALAKDAALAAGTHLLDPDSGSFNEPAVRDVLAGRGVVGITWAWREQGLLLAPGNPAGILRVQDLARPGLRVIGRQPRAGSHVLLMHLLAEAGLRLEAIGFLPEPALAEDEVAAAVAEGRAEAGFGIRAEAAARGLDFVPLVRERFDLVMRRRAYFEPALQALFHFARGPAFAARAARMGGYDITETGRVAFN 289
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI0004040BB1 (helix-turn-helix transcriptional regulator n=2 Tax=Acetobacteraceae TaxID=433 RepID=UPI0004040BB1) HSP 1 Score: 302 bits (773), Expect = 2.610e-99 Identity = 154/278 (55.40%), Postives = 194/278 (69.78%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER++YEL R+RR+P A++GGKWLFPR ++ W+A D PPPILAGSHDPLL+WA+R+S GLA GGSLDGL L AA VAA H++DPD+G +N PA+ +P + +V I WAWR+QGL+V GNP+ L + DL R+V RQ +AGSHVL HLL EAG+RL+ + L PAL+E E+AAAV EGRADAGFG+ A A G+ FVPL RERFDL M RR +FG+P+Q LLAFARGP A R+GGYD+A +G + N
Sbjct: 32 LSERSLYELARSRRLPAAQVGGKWLFPRAQLERWLAAQADQPDVA-HRLDPPPILAGSHDPLLDWAVRQSGCGLAMRAGGSLDGLAELAAGAAQVAASHLLDPDSGTWNEPAVREMLPRRAMVGITWAWREQGLIVPAGNPRNLAHVRDLTGG-MRVVRRQARAGSHVLLTHLLTEAGVRLEQVPFLPEPALSEDEVAAAVAEGRADAGFGIRAEAAARGLGFVPLIRERFDLVMERRHFFGEPMQALLAFARGPAFAARATRMGGYDVAEMGAVAFN 307
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI001C23702B (helix-turn-helix domain-containing protein n=1 Tax=Roseomonas oleicola TaxID=2801474 RepID=UPI001C23702B) HSP 1 Score: 301 bits (770), Expect = 4.230e-99 Identity = 150/278 (53.96%), Postives = 189/278 (67.99%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER +Y+L R +R+P A++GGKWLFP + W+A G A PPPILAGSHDPLL+WA+R+S GLA GGSLDGL AL + A+ AA H++DPD+G FN PA + GQ +V + WAWR QGLL+A GNP + +ADL R R++ RQP+AGSH+L +HLLAEAG+RL+++ L PAL+E E+AAAV EGRAD GFG+ A A G+DFVPL RERFDL M RR YF P+Q L FAR P A R+GGYD+ G + N
Sbjct: 16 LSERALYDLARAKRLPAAQLGGKWLFPSRALQGWLAAEA---GEGTARPAPPPILAGSHDPLLDWAVRQSGCGLALRAGGSLDGLAALAEGQAVAAATHLLDPDSGTFNEPAARDLLAGQAVVGLVWAWRDQGLLLAPGNPASILGVADLARPGLRVIGRQPRAGSHILLMHLLAEAGLRLEAIGFLAEPALSEDEVAAAVAEGRADCGFGIRAEAASRGLDFVPLLRERFDLVMPRRQYFESPLQTLFGFARSPAFAARAARMGGYDIGETGRVSFN 290
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI001CFC9AC7 (helix-turn-helix transcriptional regulator n=1 Tax=Roseicella sp. GB24 TaxID=2883479 RepID=UPI001CFC9AC7) HSP 1 Score: 300 bits (768), Expect = 9.100e-99 Identity = 157/278 (56.47%), Postives = 193/278 (69.42%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPPPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER++Y L R RR+P A++GGKWLFPR L++ W+A D AAP P ILAGSHDPLL+WA R+S GLA GGSLDGL+AL AMVAALH++DPD+G FN PA+ AA+ G+ V + WAWR+QGL+V GNP L +ADL R R++ RQ +AGSH L LHLLAEA +RLD L L PA+ E E+AAAV EGRA+AGFG+ A+A G+ FVPL +ERFDL M RRDYF P+Q LLAF R P A R+GGYD+ G I +
Sbjct: 16 LSERSLYALARQRRVPAAQLGGKWLFPRALLERWLAAQADPPGVEHRAAPLP-ILAGSHDPLLDWAARQSGCGLALRGGGSLDGLEALVRGEAMVAALHLLDPDSGTFNEPAVRAALAGRGTVGLVWAWREQGLIVPPGNPLNLATVADLARPGLRVIGRQRRAGSHALLLHLLAEAELRLDQLGFLPEPAMAEDEVAAAVAEGRAEAGFGIRAAAASRGLGFVPLLKERFDLVMDRRDYFEAPLQALLAFTRSPAFAARAARMGGYDVMPTGSIAFS 292
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Match: UPI0011F31E91 (helix-turn-helix transcriptional regulator n=1 Tax=Siccirubricoccus phaeus TaxID=2595053 RepID=UPI0011F31E91) HSP 1 Score: 300 bits (768), Expect = 9.410e-99 Identity = 156/279 (55.91%), Postives = 191/279 (68.46%), Query Frame = 1
Query: 1 LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAP-PPPILAGSHDPLLEWALRRSRSGLATMPGGSLDGLDALRDRAAMVAALHIVDPDTGDFNVPALAAAMPGQDIVAIGWAWRQQGLLVAKGNPKKLRRLADLKRRKARIVLRQPQAGSHVLFLHLLAEAGIRLDSLDALDPPALNETEIAAAVREGRADAGFGVAASAGQLGIDFVPLFRERFDLAMRRRDYFGQPVQRLLAFARGPELRRHADRLGGYDLARLGEIVLN 834
L ER++YE+ R RR+P A++GGKWLFPR L++ W+A G++ A P PPPILAGSHDPLL+WA+R+S GLA GGSLDGL AL AM AA H++DPDTG FN PA+ A+PG +V I WAWR+QGL+V GNP L +A L R R+ RQ +AGSHVL HLL EAGIRL+ + L PA++E E+AAAV EGRA+AGFG+ A AG G+ FVPL ERFDL M RR YF +Q LL FARG E RLGGY L + G + N
Sbjct: 17 LSERSLYEMARQRRLPAAQLGGKWLFPRRLLEAWLAAEAAAGTT--APRPDPPPILAGSHDPLLDWAVRQSGCGLALRSGGSLDGLAALAAGEAMAAATHLLDPDTGAFNEPAVRQALPGWGVVGITWAWREQGLIVPPGNPAGLGEVAALARPGIRVAGRQARAGSHVLLTHLLTEAGIRLEQIGFLPAPAMSEDEVAAAVAEGRAEAGFGIRAEAGSRGLGFVPLIAERFDLVMPRRQYFAPAMQALLGFARGAEFAARGARLGGYALGKTGRVAFN 293 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17895.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17895.1.1 >prot_P-wetherbeei_contig17895.1.1 ID=prot_P-wetherbeei_contig17895.1.1|Name=mRNA_P-wetherbeei_contig17895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=280bp LQERTIYELVRTRRIPCARIGGKWLFPRPLVDMWIAQHTDLGSSGIAAAPback to top mRNA from alignment at P-wetherbeei_contig17895:2..841+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17895.1.1 ID=mRNA_P-wetherbeei_contig17895.1.1|Name=mRNA_P-wetherbeei_contig17895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig17895:2..841+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17895:2..841+ >mRNA_P-wetherbeei_contig17895.1.1 ID=mRNA_P-wetherbeei_contig17895.1.1|Name=mRNA_P-wetherbeei_contig17895.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig17895:2..841+ (Phaeothamnion wetherbeei SAG_119_79)back to top |