mRNA_P-wetherbeei_contig17893.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17893.2.1
Unique NamemRNA_P-wetherbeei_contig17893.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A3C0TST5_9PROT (LexA repressor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TST5_9PROT)

HSP 1 Score: 402 bits (1033), Expect = 1.150e-140
Identity = 202/236 (85.59%), Postives = 222/236 (94.07%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 708
            MLTNKQYELLIYIN+ +RE+GVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLP++ A  G R+RGFSPNVIEGSRS F+GV+ PA+A N+++++N+PMIGRIAAGTPIEALED+S  +GVPS ML  GQH+ALEVQGDSMINAGI DGDIAI++QCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH
Sbjct:    1 MLTNKQYELLIYINECLREHGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPDSAAHKG-RSRGFSPNVIEGSRSPFSGVTPPASASNDDSVVNLPMIGRIAAGTPIEALEDKSASIGVPSSMLAGGQHFALEVQGDSMINAGILDGDIAIIRQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 235          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A353LSK7_9PROT (LexA repressor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A353LSK7_9PROT)

HSP 1 Score: 342 bits (876), Expect = 9.390e-117
Identity = 172/236 (72.88%), Postives = 207/236 (87.71%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH 708
            MLTNKQYELLI+IN+RIRE G+SPSFDEMK+AL+LKSKSGIHRLI+ALEERGFIRRLPNRARALEVLRLP+++AQ G R++GF+PNVI+   SA         +  ++ ++ IP++G+IAAG PIEALEDRS M+GVP+ +L  G H+ALEV+GDSMI AGI DGDIAI+K+CDTAENG IVVALVDGQ+ATLKRLRRKGASIALEPANP+Y+TRI GPDQVAVQGR+VG++R+YH
Sbjct:    1 MLTNKQYELLIFINERIRESGISPSFDEMKEALNLKSKSGIHRLISALEERGFIRRLPNRARALEVLRLPDSVAQFG-RSKGFAPNVIDSDGSARPVPRKQPQSLPDSNVVEIPLLGKIAAGIPIEALEDRSNMIGVPAALLAGGDHFALEVEGDSMITAGILDGDIAIIKRCDTAENGTIVVALVDGQDATLKRLRRKGASIALEPANPDYETRIYGPDQVAVQGRMVGLYRQYH 235          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI001BC73D6D (Transcriptional repressor LexA n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI001BC73D6D)

HSP 1 Score: 311 bits (797), Expect = 1.090e-104
Identity = 161/238 (67.65%), Postives = 196/238 (82.35%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRG---FSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQYELL +I++R++E GV PSFDEMKDALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV+RLPET+A + G  RG   FSPNVIEGS      V +    G  N  I IP++GRIAAGTPIEA+++RS  + VP +ML AG+HYALEV+GDSMI+AGI +GD+A++K+ D A++G IVVALVD +EATLKRLR+KGASIALE ANP Y+TRI GPD+V +QG+LVGI+R+Y
Sbjct:    1 MLTRKQYELLRFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARALEVIRLPETVAPAMGSPRGRGGFSPNVIEGSLGKVAKVPSDKEDGGSNRPIAIPVMGRIAAGTPIEAIQNRSHTVHVPPEMLSAGEHYALEVKGDSMIDAGILEGDLALIKKADVADSGDIVVALVDSEEATLKRLRKKGASIALEAANPAYETRIFGPDRVEIQGKLVGIYRRY 238          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2A4SB33_9HYPH (LexA repressor n=1 Tax=Rhodobiaceae bacterium TaxID=2026785 RepID=A0A2A4SB33_9HYPH)

HSP 1 Score: 311 bits (796), Expect = 1.660e-104
Identity = 160/240 (66.67%), Postives = 193/240 (80.42%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPE----TMAQSGGRTRGFSPNVIEGSRSAFTGV-SAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ+ELL++IN+R++E GV+PSFDEMK+ALDL+SKSGIHRLI ALEERGFIRRLP+RARALE+L+LPE    T+        GFSP+VIEGS S  +   S   N+ NEN  +N+P++GRIAAGTPIEAL++ S  + VP  M+G G HYALEV+GDSMI+AGI DGD  I+++CDTA NG IVVALV+G EATLKRLRRKG SIALE ANP Y+TRI GPDQV VQGRLVG+ R+Y
Sbjct:    1 MLTRKQHELLMFINERLKETGVAPSFDEMKEALDLRSKSGIHRLITALEERGFIRRLPHRARALEILKLPESSSPTLGHGAPAATGFSPSVIEGSLSKQSSAGSGTFNSANENDAMNVPVMGRIAAGTPIEALQEESHQVSVPLSMMGTGDHYALEVKGDSMIDAGILDGDTVIIQRCDTANNGEIVVALVEGHEATLKRLRRKGGSIALEAANPAYETRIFGPDQVKVQGRLVGLMRRY 240          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A327JVK6_9HYPH (LexA repressor n=1 Tax=Rhodobium orientis TaxID=34017 RepID=A0A327JVK6_9HYPH)

HSP 1 Score: 306 bits (783), Expect = 1.420e-102
Identity = 157/238 (65.97%), Postives = 194/238 (81.51%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQ---SGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQYELL++I++R++E GV PSFDEMKDALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV++LPE+++    S GR RGF P+VIEGS       +     G+  T+  IP++GRIAAGTPIEA++ R+  + VP+D+LGAG+HYALEV+GDSMI AGI DGD  ++++ DTA +G I+VALVD +EATLKRLRRKGASIALE ANP Y+TRI GPD+V +QGRLVG+FR Y
Sbjct:    1 MLTPKQYELLMFIHERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEERGFIRRLPNRARALEVIKLPESVSPGLASSGRGRGFQPSVIEGSLGRAPAAAKAGGDGDARTV-TIPVMGRIAAGTPIEAIQHRTHSVPVPADLLGAGEHYALEVRGDSMIEAGILDGDTVVIRRADTANSGDIIVALVDEEEATLKRLRRKGASIALEAANPAYETRIFGPDRVRIQGRLVGLFRSY 237          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2E5BVK3_9HYPH (LexA repressor n=5 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E5BVK3_9HYPH)

HSP 1 Score: 301 bits (770), Expect = 1.350e-100
Identity = 161/240 (67.08%), Postives = 196/240 (81.67%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGR-TRGFSPNVIEGSRSAFTGVSAPAN----AGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ+ELL++IN+RI+E GVSPSFDEMK+ALDL+SKSGIHRLI ALEERGF+RRLP+RARALE+++LPE+ + S GR + GFSP VIEGS       +AP N    A NE+++  +P++GRIAAGTPIEAL+  S  + VP DML  G+HYALEV+GDSMI+AGI DGD  I+++CDTA NG IVVALVD QEATLKRLRRKG S+ALE ANP Y+TRI GPD+V VQGRLVG+ R+Y
Sbjct:    1 MLTRKQHELLMFINERIKESGVSPSFDEMKEALDLRSKSGIHRLITALEERGFLRRLPHRARALEIVKLPESASPSFGRNSNGFSPAVIEGSLGKER--TAPQNTRPVAANEDSM-PVPVMGRIAAGTPIEALQQESHQVSVPLDMLARGEHYALEVKGDSMIDAGILDGDTVIIERCDTATNGDIVVALVDDQEATLKRLRRKGNSVALEAANPAYETRIFGPDRVKVQGRLVGLMRRY 237          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2E0IRQ6_9HYPH (LexA repressor n=2 Tax=Ahrensia sp. TaxID=1872419 RepID=A0A2E0IRQ6_9HYPH)

HSP 1 Score: 301 bits (770), Expect = 1.390e-100
Identity = 159/243 (65.43%), Postives = 195/243 (80.25%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPA--------NAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ +LL++IN+R++E GV PSFDEMK+ALDL SKSGIHRLI ALEERGFIRRLPNRARALEV+RLP+++  +G R RGFSP+VIEGS     G  APA        N  +  ++I +PM+G+IAAG PI A+E ++ M+ +P+DM+G G+HYALEV+GDSMI AGIFDGD AI+K+ DTA  G I+VALVD +EATLKRLRRKGASIALE ANP Y+TRI GPD+V VQGRLVG+ R+Y
Sbjct:    1 MLTRKQLDLLMFINERLKETGVPPSFDEMKEALDLASKSGIHRLITALEERGFIRRLPNRARALEVIRLPDSLTPAGQR-RGFSPSVIEGS----LGKPAPAXXXXXRASNDSDGGSMIPVPMMGKIAAGVPISAIEHQTRMISLPADMIGKGEHYALEVEGDSMIEAGIFDGDTAIIKKGDTANAGDIIVALVDDEEATLKRLRRKGASIALEAANPAYETRIFGPDRVRVQGRLVGLMRRY 238          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI001BCDD8EC (transcriptional repressor LexA n=1 Tax=Ancylobacter dichloromethanicus TaxID=518825 RepID=UPI001BCDD8EC)

HSP 1 Score: 300 bits (768), Expect = 2.210e-100
Identity = 150/235 (63.83%), Postives = 191/235 (81.28%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ+ELL++IN+R+++ GV PSF+EMK+ALDL+SKSGIHRLI ALEERGFIRRLPNRARALEV+RLPE   Q     R F+PNVIEGS      V  P++ G E  ++++P++GRIAAGTPI A++ R   +G+P +ML  G+HYALEV+GDSMI AGI DGD+A++++CD A  G IVVAL+D +EATLKRLRRKGAS+ALE ANP Y+TRI GPD+V +QG+LVG+FR+Y
Sbjct:    1 MLTRKQHELLLFINERLQQDGVPPSFEEMKEALDLRSKSGIHRLITALEERGFIRRLPNRARALEVVRLPED-TQPQRPVRAFAPNVIEGSLGK---VRPPSDDGAERRVVSVPVMGRIAAGTPISAIQSRDHTIGMPPEMLSGGEHYALEVRGDSMIEAGILDGDLALIRKCDAASTGEIVVALIDDEEATLKRLRRKGASVALEAANPAYETRIFGPDRVRIQGKLVGLFRRY 231          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: UPI0018693A2B (transcriptional repressor LexA n=1 Tax=Oricola sp. NBU1457 TaxID=2775868 RepID=UPI0018693A2B)

HSP 1 Score: 299 bits (766), Expect = 5.850e-100
Identity = 158/240 (65.83%), Postives = 191/240 (79.58%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAPANAGN--ENT---IINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ ELL++IN+R++E GV PSFDEMKDALDL SKSGIHRLI ALEERGFIRRLPNRARALEV+RLP+ MA SGGR RGFSP+VIEGS         P       +NT   ++ IP++G+IAAG PI A+E ++  + +P DMLG+G+HYALEV+GDSMI AGIFDGD AI+K+ ++A  G I+VALVD +EATLKR RRKGASIALE ANP Y+TRI GPD+V VQGRL+G+ R+Y
Sbjct:    1 MLTRKQLELLMFINERLKESGVPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLPNRARALEVIRLPDNMAPSGGR-RGFSPSVIEGSLGKPQPAPMPKAPARFADNTDGGVVPIPVMGKIAAGVPISAIEHQTRTLSLPPDMLGSGEHYALEVEGDSMIEAGIFDGDTAIIKKGESANAGDIIVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVRVQGRLIGLIRRY 239          
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Match: A0A2N9W200_9HYPH (LexA repressor n=20 Tax=Bacteria TaxID=2 RepID=A0A2N9W200_9HYPH)

HSP 1 Score: 298 bits (764), Expect = 1.180e-99
Identity = 153/239 (64.02%), Postives = 193/239 (80.75%), Query Frame = 1
Query:    1 MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEERGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSAP----ANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYALEVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKGASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKY 705
            MLT KQ+ELL++I++R++E G+ PSFDEMKDALDL SKSGIHRLI ALEERGFIRRL NRARALEVLRLP+++A      R FSP+VIEGS         P    A+  + +TI++IP++GRIAAG PI A+++++ M+G+P DM+G+G+HYALEV+GDSMI+AGIFDGD  ++K+ DTA  G IVVALVD +EATLKR RRKGASIALE ANP Y+TRI GPD+V VQG+LVG+ R+Y
Sbjct:    1 MLTRKQHELLLFIHERLKETGIPPSFDEMKDALDLASKSGIHRLITALEERGFIRRLANRARALEVLRLPDSIAPGLNAQRKFSPSVIEGSLGRNIAPPRPQSRSADDSSASTIVSIPVMGRIAAGVPISAIQNQTHMIGLPPDMIGSGEHYALEVKGDSMIDAGIFDGDTVVIKRSDTANPGEIVVALVDDEEATLKRFRRKGASIALEAANPAYETRIFGPDRVRVQGKLVGLIRRY 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17893.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TST5_9PROT1.150e-14085.59LexA repressor n=1 Tax=Alphaproteobacteria bacteri... [more]
A0A353LSK7_9PROT9.390e-11772.88LexA repressor n=1 Tax=Alphaproteobacteria bacteri... [more]
UPI001BC73D6D1.090e-10467.65Transcriptional repressor LexA n=1 Tax=Hyphomicrob... [more]
A0A2A4SB33_9HYPH1.660e-10466.67LexA repressor n=1 Tax=Rhodobiaceae bacterium TaxI... [more]
A0A327JVK6_9HYPH1.420e-10265.97LexA repressor n=1 Tax=Rhodobium orientis TaxID=34... [more]
A0A2E5BVK3_9HYPH1.350e-10067.08LexA repressor n=5 Tax=Hyphomicrobiales TaxID=356 ... [more]
A0A2E0IRQ6_9HYPH1.390e-10065.43LexA repressor n=2 Tax=Ahrensia sp. TaxID=1872419 ... [more]
UPI001BCDD8EC2.210e-10063.83transcriptional repressor LexA n=1 Tax=Ancylobacte... [more]
UPI0018693A2B5.850e-10065.83transcriptional repressor LexA n=1 Tax=Oricola sp.... [more]
A0A2N9W200_9HYPH1.180e-9964.02LexA repressor n=20 Tax=Bacteria TaxID=2 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17893contigP-wetherbeei_contig17893:603..1313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1282876.BAOK01000001_gene2198
Preferred namelexA
PFAMsLexA_DNA_bind,Peptidase_S24
Model size711
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K01356
KEGG ModuleM00729
Hectar predicted targeting categoryother localisation
GOsGO:0000976,GO:0001067,GO:0001130,GO:0001217,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005575,GO:0006355,GO:0006950,GO:0006974,GO:0007154,GO:0008150,GO:0009432,GO:0009605,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0019219,GO:0019222,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031668,GO:0032991,GO:0032993,GO:0033554,GO:0043565,GO:0044212,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0071496,GO:0080090,GO:0097159,GO:0140110,GO:1901363,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990837,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue3.95e-103
EggNOG OGsCOG1974@1|root,COG1974@2|Bacteria,1MW80@1224|Proteobacteria,2TT7W@28211|Alphaproteobacteria,4BPZI@82117|unclassified Alphaproteobacteria
EC3.4.21.88
DescriptionRepresses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Cds size711
COG categoryK
BRITEko00000,ko00002,ko01000,ko01002,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.1983721-CDS-P-wetherbeei_contig17893:602..13131683186130.1983721-CDS-P-wetherbeei_contig17893:602..1313Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17893 603..1313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17893.2.1prot_P-wetherbeei_contig17893.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17893 603..1313 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17893.2.1

>prot_P-wetherbeei_contig17893.2.1 ID=prot_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MLTNKQYELLIYINDRIREYGVSPSFDEMKDALDLKSKSGIHRLINALEE
RGFIRRLPNRARALEVLRLPETMAQSGGRTRGFSPNVIEGSRSAFTGVSA
PANAGNENTIINIPMIGRIAAGTPIEALEDRSTMMGVPSDMLGAGQHYAL
EVQGDSMINAGIFDGDIAIVKQCDTAENGAIVVALVDGQEATLKRLRRKG
ASIALEPANPNYKTRICGPDQVAVQGRLVGIFRKYH*
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mRNA from alignment at P-wetherbeei_contig17893:603..1313-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17893.2.1 ID=mRNA_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:603..1313- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACCAACAAGCAATATGAATTGCTGATTTATATCAATGACCGGAT CCGCGAATATGGGGTTTCGCCGTCATTCGACGAAATGAAAGATGCGCTGG ATCTGAAGTCCAAGTCGGGCATCCACCGCCTGATCAATGCGCTGGAAGAA CGTGGCTTTATCCGCCGCCTGCCCAATCGCGCCCGGGCGCTGGAAGTTTT GCGCCTGCCCGAAACCATGGCCCAGTCTGGCGGGCGTACGCGCGGCTTCT CGCCCAATGTGATCGAAGGCAGCCGCAGCGCCTTTACCGGCGTTAGCGCC CCCGCAAATGCCGGCAATGAAAATACAATCATCAACATACCCATGATCGG GCGCATCGCCGCCGGCACGCCCATTGAGGCGCTGGAGGACCGCTCGACCA TGATGGGCGTACCCTCCGACATGCTGGGTGCAGGACAGCATTACGCGCTG GAGGTGCAGGGCGATTCGATGATCAATGCGGGCATTTTTGACGGCGATAT CGCCATCGTCAAACAATGTGACACCGCAGAAAATGGCGCAATCGTTGTGG CGCTGGTGGATGGGCAGGAAGCCACACTGAAACGGCTGCGGCGCAAGGGC GCATCCATTGCGCTTGAACCCGCCAACCCCAATTACAAAACCCGCATATG CGGCCCCGATCAGGTCGCGGTGCAGGGGCGCCTGGTCGGTATTTTCCGTA AATATCATTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17893:603..1313-

>mRNA_P-wetherbeei_contig17893.2.1 ID=mRNA_P-wetherbeei_contig17893.2.1|Name=mRNA_P-wetherbeei_contig17893.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:603..1313- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACCAACAAGCAATATGAATTGCTGATTTATATCAATGACCGGAT
CCGCGAATATGGGGTTTCGCCGTCATTCGACGAAATGAAAGATGCGCTGG
ATCTGAAGTCCAAGTCGGGCATCCACCGCCTGATCAATGCGCTGGAAGAA
CGTGGCTTTATCCGCCGCCTGCCCAATCGCGCCCGGGCGCTGGAAGTTTT
GCGCCTGCCCGAAACCATGGCCCAGTCTGGCGGGCGTACGCGCGGCTTCT
CGCCCAATGTGATCGAAGGCAGCCGCAGCGCCTTTACCGGCGTTAGCGCC
CCCGCAAATGCCGGCAATGAAAATACAATCATCAACATACCCATGATCGG
GCGCATCGCCGCCGGCACGCCCATTGAGGCGCTGGAGGACCGCTCGACCA
TGATGGGCGTACCCTCCGACATGCTGGGTGCAGGACAGCATTACGCGCTG
GAGGTGCAGGGCGATTCGATGATCAATGCGGGCATTTTTGACGGCGATAT
CGCCATCGTCAAACAATGTGACACCGCAGAAAATGGCGCAATCGTTGTGG
CGCTGGTGGATGGGCAGGAAGCCACACTGAAACGGCTGCGGCGCAAGGGC
GCATCCATTGCGCTTGAACCCGCCAACCCCAATTACAAAACCCGCATATG
CGGCCCCGATCAGGTCGCGGTGCAGGGGCGCCTGGTCGGTATTTTCCGTA
AATATCATTAG
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