mRNA_P-wetherbeei_contig17893.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17893.1.1
Unique NamemRNA_P-wetherbeei_contig17893.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A3C0TXL0_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXL0_9PROT)

HSP 1 Score: 127 bits (318), Expect = 5.330e-35
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNAPNKVRLLGQIPPQSR 363
            MV++FGG + R+S+RA +W+ ERG+   F DL    ID   LDAW   FGW+ LIDKR+  WR  +    + LG  EA  ++   P +LK+P+IGV + WLLGWNA NK+RLLG +P   R
Sbjct:    1 MVKIFGGADCRSSRRAFQWLGERGLLCHFVDLKKRGIDEAHLDAWIQDFGWRRLIDKRSVAWRTLTQGHSHQLGPREAREIISRHPALLKSPLIGVRNQWLLGWNAKNKIRLLGLLPEHHR 121          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A833ISW4_9GAMM (ArsC family reductase n=1 Tax=Alkalilimnicola sp. S0819 TaxID=2613922 RepID=A0A833ISW4_9GAMM)

HSP 1 Score: 84.3 bits (207), Expect = 1.360e-18
Identity = 42/120 (35.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNAPNKVRLLGQIPPQS 360
            M  ++G KN    ++A RW++ RGV YRF DL A  + A     W +  GW+ ++++R   WR     LK T  AA A ALL   P ++K P++  AD   +G+N  +   L G+  P +
Sbjct:    1 MTTLYGIKNCDTVRKARRWLDARGVDYRFHDLRADGLSAEQTARWCEACGWEQVLNRRGTTWRQLDGALKATADAANAPALLAEHPTLIKRPVLEHADRIRVGFNEADYSTLFGEDTPPN 120          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A2E0LHH4_9GAMM (ArsC family reductase n=1 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A2E0LHH4_9GAMM)

HSP 1 Score: 79.0 bits (193), Expect = 1.390e-16
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNAPNKVRLLG 342
            M  + G  N    +RA RW++ERG+ YRF D+ AA +DA  L+ W  T GWQ L+++R+  WR   +  +  L AA A  LL   P +L+ P++       +G++     R+ G
Sbjct:    1 MTDLHGIPNCDTVRRARRWLDERGIDYRFHDVRAAGLDAGRLNHWLATLGWQALVNRRSTTWRQLDTRERECLSAATAAELLRTHPTLLRRPVLEHRGTIEVGFSPECYQRIFG 114          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A7T2GHT5_9SPHN (ArsC family reductase n=1 Tax=Sphingosinicella flava TaxID=2771430 RepID=A0A7T2GHT5_9SPHN)

HSP 1 Score: 77.8 bits (190), Expect = 3.950e-16
Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGW 312
            M+ ++G KN    ++A  W++ +G+ Y F D   A +D   L AW D FGW+ ++++    +R      K  L    A++L+  +P+M+K PI+G  + WLLG+
Sbjct:    1 MLTLYGIKNCDTVKKARAWLDAQGIGYTFHDYKVAGVDEAQLRAWVDEFGWEKVLNRAGTTFRKLPDTDKEGLDVDRAVSLMLAQPSMIKRPILGTGECWLLGF 104          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A4R1H9B3_9GAMM (Spx/MgsR family transcriptional regulator n=1 Tax=Thiogranum longum TaxID=1537524 RepID=A0A4R1H9B3_9GAMM)

HSP 1 Score: 77.4 bits (189), Expect = 5.440e-16
Identity = 33/105 (31.43%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWN 315
            M+ ++G KN    ++A+RW++E GV YRF D     +DA+ L AW    GW+ L+++R   WR      ++ +    AL  +   P ++K P++   +  +LG+N
Sbjct:    1 MIAIYGIKNCDTMKKAMRWLDEHGVEYRFHDYRKDGLDAKQLKAWEKELGWEQLLNRRGQLWRKLPQSARDNIDRETALKCMLDNPGIIKRPLLDTGEHRVLGFN 105          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A212UBP8_9GAMM (Arsenate reductase n=1 Tax=Marinobacter sp. es.048 TaxID=1761795 RepID=A0A212UBP8_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 1.500e-15
Identity = 30/105 (28.57%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    4 VRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNA 318
            ++++G KN    ++A +W++ +G+ Y F D     +D+ LL  W  T GW++L+++R   WR    ++++T+ A  A A++   P+++K P++   D   +G++A
Sbjct:    1 MKLYGIKNCDTVKKARKWLDGQGIDYEFHDFKKDGLDSELLSRWEQTVGWEILLNRRGTTWRKLPEEVRDTISAQSAHAIMLDNPSIIKRPVVESGDEVRVGFSA 105          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A6I5IXJ7_9VIBR (ArsC family reductase n=9 Tax=Vibrio TaxID=662 RepID=A0A6I5IXJ7_9VIBR)

HSP 1 Score: 76.3 bits (186), Expect = 1.580e-15
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNA 318
            ++ ++G  N    ++A +W+E + + Y+F D     I   L+  +F + GW+ +I+KR   +R  S + K  L  A ALALL  +P M+K PI+ V D   LG+NA
Sbjct:    2 LITLYGIPNCDTIKKARKWLETQAIEYQFHDYRKNGITLELISEFFQSLGWEHVINKRGTTYRQLSQEQKEKLNEASALALLLEQPAMIKRPILRVQDTLYLGFNA 107          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A2N5YFD9_9GAMM (ArsC family reductase n=2 Tax=Halioglobus TaxID=1217416 RepID=A0A2N5YFD9_9GAMM)

HSP 1 Score: 75.9 bits (185), Expect = 2.410e-15
Identity = 30/112 (26.79%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNAPNKVRL 336
            M+ ++G KN    ++A +W++E+G+ YRF D  A  +DA  +  W D+ GW+ ++++R+  W+  SS+ +  +    AL+ +   P ++K P++     +  G+ A    ++
Sbjct:    1 MITLYGIKNCDTVKKARKWLDEKGMDYRFHDFRADGVDADQVANWLDSLGWETVVNRRSTTWKGLSSEQREGMDRDSALSAIVEEPTLVKRPLLDTGGEYHCGFKADQYAQI 112          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A5D0VQG3_9GAMM (ArsC family reductase n=1 Tax=Marinobacter sp. BW6 TaxID=2592624 RepID=A0A5D0VQG3_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 3.000e-15
Identity = 31/105 (29.52%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    4 VRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNA 318
            ++++G KN    ++A +W++E+G+ Y+F D     +   LL  W  + GW+ LI++R   WR    D+++T+ A  A A++   P+++K P++   D   +G++A
Sbjct:    1 MKLYGIKNCDTVKKARKWLDEQGIDYQFHDFKKDGLGDELLSRWEKSLGWEALINRRGTTWRKLPEDVRDTISAQSAHAIMLDNPSIIKRPVVESGDDVRVGFSA 105          
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Match: A0A1Y5PNS6_9SPHN (Uncharacterized protein n=1 Tax=uncultured Sphingopyxis sp. TaxID=310581 RepID=A0A1Y5PNS6_9SPHN)

HSP 1 Score: 75.5 bits (184), Expect = 3.240e-15
Identity = 37/108 (34.26%), Postives = 60/108 (55.56%), Query Frame = 1
Query:    1 MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFGWQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIWLLGWNAPN 324
            ++ VFG  N    ++A RW++ERGV+YRF D+    +DA  L  W D  GW+ L++K    +R      K  L AA A AL+  +P M++ P++       +G++A +
Sbjct:    2 LLTVFGIPNCDTVKKARRWLDERGVAYRFHDVRKDGLDAARLQGWIDAVGWEKLLNKAGTTFRKLPEAQKEGLDAAAAKALMLEQPAMIRRPVVEAGGEISVGFSAAD 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17893.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXL0_9PROT5.330e-3547.93Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A833ISW4_9GAMM1.360e-1835.00ArsC family reductase n=1 Tax=Alkalilimnicola sp. ... [more]
A0A2E0LHH4_9GAMM1.390e-1635.09ArsC family reductase n=1 Tax=Porticoccaceae bacte... [more]
A0A7T2GHT5_9SPHN3.950e-1632.69ArsC family reductase n=1 Tax=Sphingosinicella fla... [more]
A0A4R1H9B3_9GAMM5.440e-1631.43Spx/MgsR family transcriptional regulator n=1 Tax=... [more]
A0A212UBP8_9GAMM1.500e-1528.57Arsenate reductase n=1 Tax=Marinobacter sp. es.048... [more]
A0A6I5IXJ7_9VIBR1.580e-1534.91ArsC family reductase n=9 Tax=Vibrio TaxID=662 Rep... [more]
A0A2N5YFD9_9GAMM2.410e-1526.79ArsC family reductase n=2 Tax=Halioglobus TaxID=12... [more]
A0A5D0VQG3_9GAMM3.000e-1529.52ArsC family reductase n=1 Tax=Marinobacter sp. BW6... [more]
A0A1Y5PNS6_9SPHN3.240e-1534.26Uncharacterized protein n=1 Tax=uncultured Sphingo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17893contigP-wetherbeei_contig17893:119..481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1122207.MUS1_14065
PFAMsArsC,Glutaredoxin
Model size363
Max annot lvl135619|Oceanospirillales
KEGG koko:K00537
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.96e-18
EggNOG OGsCOG1393@1|root,COG1393@2|Bacteria,1MZ6S@1224|Proteobacteria,1S8TR@1236|Gammaproteobacteria,1XKRS@135619|Oceanospirillales
EC1.20.4.1
DescriptionBelongs to the ArsC family
Cds size363
COG categoryP
BRITEko00000,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.1614494-CDS-P-wetherbeei_contig17893:118..4811683186130.1614494-CDS-P-wetherbeei_contig17893:118..481Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17893 119..481 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17893.1.1prot_P-wetherbeei_contig17893.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17893 119..481 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17893.1.1

>prot_P-wetherbeei_contig17893.1.1 ID=prot_P-wetherbeei_contig17893.1.1|Name=mRNA_P-wetherbeei_contig17893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MVRVFGGKNSRASQRALRWMEERGVSYRFFDLDAARIDARLLDAWFDTFG
WQMLIDKRTAGWRNQSSDLKNTLGAAEALALLCHRPNMLKTPIIGVADIW
LLGWNAPNKVRLLGQIPPQSR
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mRNA from alignment at P-wetherbeei_contig17893:119..481+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17893.1.1 ID=mRNA_P-wetherbeei_contig17893.1.1|Name=mRNA_P-wetherbeei_contig17893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:119..481+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGAGTTTTTGGAGGGAAAAACAGCCGCGCCAGCCAAAGGGCGCT GCGCTGGATGGAAGAACGCGGTGTTTCCTATCGGTTTTTTGATTTAGACG CGGCCCGTATCGATGCGCGCTTGCTGGATGCATGGTTCGATACATTTGGC TGGCAAATGCTGATCGACAAACGCACCGCCGGGTGGCGCAACCAATCCAG TGATCTCAAAAATACGCTTGGCGCCGCCGAGGCCCTCGCATTGCTATGCC ATCGACCGAATATGCTAAAAACGCCGATCATCGGTGTGGCGGATATCTGG CTGCTTGGCTGGAACGCGCCGAACAAGGTGCGCCTGCTTGGACAAATTCC ACCACAATCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17893:119..481+

>mRNA_P-wetherbeei_contig17893.1.1 ID=mRNA_P-wetherbeei_contig17893.1.1|Name=mRNA_P-wetherbeei_contig17893.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig17893:119..481+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGAGTTTTTGGAGGGAAAAACAGCCGCGCCAGCCAAAGGGCGCT
GCGCTGGATGGAAGAACGCGGTGTTTCCTATCGGTTTTTTGATTTAGACG
CGGCCCGTATCGATGCGCGCTTGCTGGATGCATGGTTCGATACATTTGGC
TGGCAAATGCTGATCGACAAACGCACCGCCGGGTGGCGCAACCAATCCAG
TGATCTCAAAAATACGCTTGGCGCCGCCGAGGCCCTCGCATTGCTATGCC
ATCGACCGAATATGCTAAAAACGCCGATCATCGGTGTGGCGGATATCTGG
CTGCTTGGCTGGAACGCGCCGAACAAGGTGCGCCTGCTTGGACAAATTCC
ACCACAATCGCGC
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