mRNA_P-wetherbeei_contig17890.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17890.1.1
Unique NamemRNA_P-wetherbeei_contig17890.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17890.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17890contigP-wetherbeei_contig17890:115..1266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog44056.XP_009041705.1
Model size957
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.29e-17
EggNOG OGs2BY5D@1|root,2SE7H@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004490.1
Cds size957
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186130.0493557-CDS-P-wetherbeei_contig17890:114..5811683186130.0493557-CDS-P-wetherbeei_contig17890:114..581Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17890 115..581 -
1683186130.0611444-CDS-P-wetherbeei_contig17890:776..12661683186130.0611444-CDS-P-wetherbeei_contig17890:776..1266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17890 777..1266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17890.1.1prot_P-wetherbeei_contig17890.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17890 115..1266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17890.1.1

>prot_P-wetherbeei_contig17890.1.1 ID=prot_P-wetherbeei_contig17890.1.1|Name=mRNA_P-wetherbeei_contig17890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
AAAPILATAAADGSVHIHVLEVWLHGRVVGGRQPRPPTAAAAAVATAAAA
SSDATAAAGGASGDSAAPGRISSAAPPATATGIGLRVVRQVAARMPAPVA
VVAMAAAPAPPQRVTALEIYPHRALGGAVVVVGDMGGVCRFYHQNGTLMA
STAADEMAAIYHSVFALARSGQYLAVADGRDIRFFATTTFRESTMHRCKG
VAAVFGGGSSGGGGSSGGDGGVVTALAHDALTPSHLFVGLADGSILGFAT
HGGSDGSDGCRLLYKLRRPAAIGGGDSTAVHKLATVRGYLLAAIGQSLAV
FNATDGGPGGPHLVFSQAI
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mRNA from alignment at P-wetherbeei_contig17890:115..1266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17890.1.1 ID=mRNA_P-wetherbeei_contig17890.1.1|Name=mRNA_P-wetherbeei_contig17890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1152bp|location=Sequence derived from alignment at P-wetherbeei_contig17890:115..1266- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGCGCCGATCCTTGCGACGGCGGCCGCCGATGGATCGGTGCATAT
CCACGTGCTCGAAGTGTGGCTGCACGGTCGGGTGGTCGGCGGCCGCCAGC
CCAGACCGCCCACCGCCGCCGCTGCCGCCGTTGCCACGGCCGCCGCGGCT
TCCAGCGACGCCACAGCCGCCGCCGGCGGCGCCAGCGGCGACAGCGCCGC
TCCTGGTCGGATATCATCGGCCGCCCCGCCGGCGACGGCCACCGGTATCG
GGCTGCGTGTGGTGCGCCAGGTTGCCGCGCGCATGCCGGCACCGGTGGCG
GTGGTGGCAATGGCTGCTGCACCGGCACCGCCGCAGCGCGTCACGGCGCT
GGAGATCTACCCCCACCGAGCGCTGGGGGGAGCGGTGGTGGTAGTTGGCG
ACATGGGAGGCGTCTGCCGCTTTTATCACCAAAACGGCACGCTGATGGCT
TCAACTGCTGCCGATGAGATGGCGGCCATTTATCACAGCGGTGGCAGCGG
CGGCGGCGGCAGCAGCAGCAGCAGCAACGATGCTGGCAACGGCGGCGGAA
CAAGCAGTGGCGGCAACAGTGATGGTGGCCACAACGGTCGCACAGAAGTG
AAACTGGCAGCGGCCGACGTCACCTCACGAAAAGTAAAGCAGTTGCCCGC
GCAGAGGTCGCCGCCGGCGCCGCAAACGACACCAGTGTTCGCCCTGGCGC
GATCCGGGCAGTACCTTGCCGTGGCGGACGGACGGGACATCCGCTTTTTT
GCCACGACAACCTTTCGCGAATCGACGATGCATCGCTGCAAGGGGGTTGC
GGCGGTCTTCGGCGGCGGCAGCAGCGGCGGCGGCGGTAGCAGCGGCGGCG
ACGGCGGGGTGGTGACGGCGCTGGCTCATGACGCTCTGACGCCCAGCCAT
CTCTTTGTGGGGTTGGCCGATGGCTCCATCCTCGGCTTCGCAACGCACGG
CGGCTCCGACGGCTCCGACGGCTGCCGCCTTCTCTACAAGCTGCGACGTC
CGGCCGCCATCGGCGGTGGCGATAGCACCGCCGTGCACAAGCTGGCGACA
GTTCGCGGCTACCTGCTGGCGGCTATCGGCCAGTCCCTCGCCGTCTTTAA
TGCGACCGACGGCGGCCCGGGCGGCCCGCACCTCGTTTTCTCGCAGGCCA
TA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17890:115..1266-

>mRNA_P-wetherbeei_contig17890.1.1 ID=mRNA_P-wetherbeei_contig17890.1.1|Name=mRNA_P-wetherbeei_contig17890.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig17890:115..1266- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGCGCCGATCCTTGCGACGGCGGCCGCCGATGGATCGGTGCATAT
CCACGTGCTCGAAGTGTGGCTGCACGGTCGGGTGGTCGGCGGCCGCCAGC
CCAGACCGCCCACCGCCGCCGCTGCCGCCGTTGCCACGGCCGCCGCGGCT
TCCAGCGACGCCACAGCCGCCGCCGGCGGCGCCAGCGGCGACAGCGCCGC
TCCTGGTCGGATATCATCGGCCGCCCCGCCGGCGACGGCCACCGGTATCG
GGCTGCGTGTGGTGCGCCAGGTTGCCGCGCGCATGCCGGCACCGGTGGCG
GTGGTGGCAATGGCTGCTGCACCGGCACCGCCGCAGCGCGTCACGGCGCT
GGAGATCTACCCCCACCGAGCGCTGGGGGGAGCGGTGGTGGTAGTTGGCG
ACATGGGAGGCGTCTGCCGCTTTTATCACCAAAACGGCACGCTGATGGCT
TCAACTGCTGCCGATGAGATGGCGGCCATTTATCACAGCGTGTTCGCCCT
GGCGCGATCCGGGCAGTACCTTGCCGTGGCGGACGGACGGGACATCCGCT
TTTTTGCCACGACAACCTTTCGCGAATCGACGATGCATCGCTGCAAGGGG
GTTGCGGCGGTCTTCGGCGGCGGCAGCAGCGGCGGCGGCGGTAGCAGCGG
CGGCGACGGCGGGGTGGTGACGGCGCTGGCTCATGACGCTCTGACGCCCA
GCCATCTCTTTGTGGGGTTGGCCGATGGCTCCATCCTCGGCTTCGCAACG
CACGGCGGCTCCGACGGCTCCGACGGCTGCCGCCTTCTCTACAAGCTGCG
ACGTCCGGCCGCCATCGGCGGTGGCGATAGCACCGCCGTGCACAAGCTGG
CGACAGTTCGCGGCTACCTGCTGGCGGCTATCGGCCAGTCCCTCGCCGTC
TTTAATGCGACCGACGGCGGCCCGGGCGGCCCGCACCTCGTTTTCTCGCA
GGCCATA
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