mRNA_P-wetherbeei_contig17872.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17872.1.1
Unique NamemRNA_P-wetherbeei_contig17872.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A7S2CLG5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLG5_9STRA)

HSP 1 Score: 179 bits (454), Expect = 4.070e-53
Identity = 78/115 (67.83%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            DFL+NRWK+H+G+LQRF+EPKGT+N+LV A+WSPKVCLLERR N +QLHD+R+GL ERAVT++GP+ FS + PLRGS+LPS++QR+CE V +H+AEVS+QKQ I  MVL+FKV +
Sbjct:  113 DFLYNRWKEHSGLLQRFIEPKGTQNSLVRAIWSPKVCLLERRQNNKQLHDTRYGLYERAVTYEGPEYFSAAAPLRGSILPSQVQRICENVVSHIAEVSFQKQCICRMVLNFKVDA 227          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: F0YMK7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMK7_AURAN)

HSP 1 Score: 177 bits (448), Expect = 7.380e-50
Identity = 77/115 (66.96%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            DFL+NRWK+HNG+LQRFVEPKG RN ++ A+WSPKVCLLERRVN +QLHD R+GL ERAVT++GP+ FS + PLRGS LPS+IQR+CE +  H+ EVS+QK +I  MV++FKV S
Sbjct:  113 DFLYNRWKEHNGVLQRFVEPKGIRNVVIRAIWSPKVCLLERRVNAKQLHDHRYGLYERAVTYEGPEHFSAAAPLRGSTLPSQIQRICENLVTHINEVSFQKHRIARMVINFKVDS 227          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: F0YIR0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIR0_AURAN)

HSP 1 Score: 173 bits (438), Expect = 5.050e-48
Identity = 76/115 (66.09%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            +FL+NRWK++NGILQRFVEPKG  NA++ A+WSPKVCLLERRVN++QLHD R+GL ERAVT++GP+ FS + PLRGS LPS++QR+CE + AH+ EVS+QK  I  MV +FKV S
Sbjct:  113 EFLYNRWKENNGILQRFVEPKGMHNAIIRAIWSPKVCLLERRVNSKQLHDQRYGLYERAVTYEGPEHFSAAAPLRGSTLPSQVQRICENLVAHITEVSFQKHCIMRMVANFKVDS 227          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A3D4HJD4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Opitutae bacterium TaxID=2026771 RepID=A0A3D4HJD4_9BACT)

HSP 1 Score: 167 bits (422), Expect = 2.320e-47
Identity = 74/115 (64.35%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            +FL+NRWK++NGILQ FVEPKG  NA++ A+WSPKVCLLERRVN++QL+D R+GL ERAVT++GP+ FS + PLRG+ LPS+IQR+CE + AHV EVS+QK ++  MV +FKV S
Sbjct:   75 EFLYNRWKENNGILQHFVEPKGVHNAIIRAIWSPKVCLLERRVNSKQLYDQRYGLYERAVTYEGPEHFSIASPLRGTALPSQIQRLCENLVAHVTEVSFQKCRVARMVANFKVDS 189          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A6S8UJB5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UJB5_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.430e-46
Identity = 74/115 (64.35%), Postives = 97/115 (84.35%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            +FL+NRWK++NGILQ FVEPKG  NA++ A+WSPKVCLLERRVN++QL+D R+GL ERAVT++GP+ FS + PLRG+ LPS+IQR+CE + AHV EVS+QK ++  MV +FKV S
Sbjct:  110 EFLYNRWKENNGILQHFVEPKGVHNAIIRAIWSPKVCLLERRVNSKQLYDQRYGLYERAVTYEGPEHFSIASPLRGTALPSQIQRLCENLVAHVTEVSFQKCRVARMVANFKVDS 224          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A7S1XZC3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZC3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 6.720e-46
Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 1
Query:    4 FLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            FL+ R+K  +GILQRFVEPKGT NA++ A+WSPK+CLLERR N RQLHD RFGL ER +T++GPD  SR+ PLRGSVLPS+IQR+CE V +HVAEVSYQ  +I  MVL+FKV +
Sbjct:  119 FLYTRFKDSSGILQRFVEPKGTNNAVIRAIWSPKICLLERRQNVRQLHDGRFGLYERCITYEGPDHHSRAAPLRGSVLPSQIQRICENVVSHVAEVSYQTFRISRMVLNFKVDA 232          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A7R9U2G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2G1_9STRA)

HSP 1 Score: 156 bits (394), Expect = 4.590e-42
Identity = 73/114 (64.04%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    4 FLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            FL++R K+ +GILQRFVEPKGT NA+V A+WSPK+CLLERRVN RQLHD RFGL E+ +T++GP   S + PLRGSVLPS++QR+CE V +H AEVSYQ  ++  MVL+FKV +
Sbjct:   40 FLYSRPKEAHGILQRFVEPKGTLNAVVRAIWSPKICLLERRVNKRQLHDPRFGLYEKCITYEGPAHHSVAAPLRGSVLPSQLQRICENVVSHFAEVSYQAFRVCRMVLNFKVDA 153          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A836CLN6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN6_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.990e-41
Identity = 67/113 (59.29%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKV 339
            +FLF+R KQHNGILQ FVEP G+ NA+V A+W+PK+CL ERRVN R+L D R+GL ERAVT+DGPD +S + PLRG+VLP+ ++ +C+A+AAHVAE++  +Q+I  M L+ K+
Sbjct:  131 EFLFHRSKQHNGILQAFVEPSGSSNAVVRAIWTPKLCLTERRVNCRKLRDKRYGLFERAVTYDGPDIYSVARPLRGTVLPTAVRHLCDAIAAHVAEITIHQQRISCMSLNLKI 243          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A6G0WWE7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWE7_9STRA)

HSP 1 Score: 149 bits (375), Expect = 3.640e-40
Identity = 68/115 (59.13%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            DFL++R K HNGILQRF+ PKG+ N+++ A+W+PK+CLLER+ N R+LHD R+GL ERAVTFDG DA+S   P+RGSVLP +IQ +CE V  HV EVS+ K +I  MVL  K  +
Sbjct:  109 DFLYSRQKIHNGILQRFIVPKGSANSMIRAIWTPKMCLLERKTNIRRLHDLRYGLYERAVTFDGADAYSNPDPVRGSVLPGDIQYLCEQVVDHVMEVSFHKYRISRMVLHIKTDA 223          
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Match: A0A067CLV4_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CLV4_SAPPC)

HSP 1 Score: 148 bits (373), Expect = 2.130e-39
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 1
Query:    1 DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHDSRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQKQQIRSMVLSFKVGS 345
            DFL+NR K HNG+LQRFV  KG  N+++ AVW+PK+CLLER+ N R+LHD+R+G+ ERAVTFDG DA+S   P+RGS+LP +IQ +CE V  HV EVS+ K +I  MVL  K  +
Sbjct:  109 DFLYNRAKVHNGVLQRFVVSKGASNSMIRAVWTPKMCLLERKTNVRKLHDTRYGIYERAVTFDGADAYSNPDPVRGSILPGDIQYLCEQVVDHVMEVSFHKYRISRMVLHLKTDA 223          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17872.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2CLG5_9STRA4.070e-5367.83Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YMK7_AURAN7.380e-5066.96Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YIR0_AURAN5.050e-4866.09Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A3D4HJD4_9BACT2.320e-4764.35Uncharacterized protein (Fragment) n=1 Tax=Opituta... [more]
A0A6S8UJB5_9STRA2.430e-4664.35Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S1XZC3_9STRA6.720e-4667.54Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9U2G1_9STRA4.590e-4264.04Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A836CLN6_9STRA4.990e-4159.29Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6G0WWE7_9STRA3.640e-4059.13Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CLV4_SAPPC2.130e-3958.26Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17872contigP-wetherbeei_contig17872:373..1325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009041643.1
Model size354
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.21e-50
EggNOG OGs28Q4D@1|root,2QWT8@2759|Eukaryota
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186129.665768-CDS-P-wetherbeei_contig17872:372..4481683186129.665768-CDS-P-wetherbeei_contig17872:372..448Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17872 373..448 +
1683186129.6741266-CDS-P-wetherbeei_contig17872:809..9471683186129.6741266-CDS-P-wetherbeei_contig17872:809..947Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17872 810..947 +
1683186129.6815002-CDS-P-wetherbeei_contig17872:1185..13251683186129.6815002-CDS-P-wetherbeei_contig17872:1185..1325Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17872 1186..1325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17872.1.1prot_P-wetherbeei_contig17872.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17872 373..1325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17872.1.1

>prot_P-wetherbeei_contig17872.1.1 ID=prot_P-wetherbeei_contig17872.1.1|Name=mRNA_P-wetherbeei_contig17872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=118bp
DFLFNRWKQHNGILQRFVEPKGTRNALVHAVWSPKVCLLERRVNTRQLHD
SRFGLSERAVTFDGPDAFSRSCPLRGSVLPSEIQRVCEAVAAHVAEVSYQ
KQQIRSMVLSFKVGSPP*
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mRNA from alignment at P-wetherbeei_contig17872:373..1325+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17872.1.1 ID=mRNA_P-wetherbeei_contig17872.1.1|Name=mRNA_P-wetherbeei_contig17872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=953bp|location=Sequence derived from alignment at P-wetherbeei_contig17872:373..1325+ (Phaeothamnion wetherbeei SAG_119_79)
GACTTTTTATTCAACCGATGGAAGCAACACAATGGAATACTGCAACGCTT TGTGGAGCCAAAAGGAACCAGAAACGGTGAGGGTCGCCCGCCAACTCTCG CTGCGAACCGTATGATGTAGACTTTCTGCAAACGCCATCTGTCCATTTCT TGAATTTCCTGACGATAGCGGCAGCGGTGATAGTGCCTAGATTAGGGCAC CTCCTATTGATACCGAACCAGATGTGGCGGCCACTCTGAATTTCTATCCA TTCGTTTTCCGTTCTCAGTTCAGGTGCCTTTCCTTCCAACTCGCTGCCTT TTCCTGCCCGCTGCACCGGCCACTGCCCTGTCACCGACCAGCCGCGACTC GTTGTGCCGTCCCTCTTACCTTCGTTGCATTTTCTTCCTGCCCTGCTTCC TCGCCTCGCCACCGGAACGACGGGGACGCACGTGCAGCGCTGGTGCACGC CGTGTGGTCGCCAAAGGTGTGCCTGCTGGAGCGGCGCGTCAACACGCGGC AGCTCCACGACAGCCGCTTCGGCCTCAGCGAGAGAGCTGTCACGTTCGAC GGGCCTGACGCCTTTAGCCGTTCGTGTGAGTCCAGAGTGCTGCACGCACC GCTGCCGCCACTTTGCCACCGCCCGCGTTGTTTGGACAGCGGTGGATGGG TCTTTCTGTTTCTGGCTCTTCTTTGCCGTTGTTCGTTTGGCAGACATGCT TTTTGAAACTGCATGCGCAGCCACGGAGGCCGGTCCTTTGCACTCCCTCA CCGCCTTCATCTTCCGACTCGCCTTTTTTGCGGCCGTTCTCTATCCTCCT CTCCCGACTTCAGGCCCGCTGCGCGGGTCGGTGCTGCCCAGCGAGATTCA GCGGGTGTGCGAAGCAGTGGCGGCCCACGTGGCAGAAGTGTCCTACCAAA AGCAGCAGATCCGCAGCATGGTCCTCAGCTTCAAGGTAGGTTCGCCGCCC TAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17872:373..1325+

>mRNA_P-wetherbeei_contig17872.1.1 ID=mRNA_P-wetherbeei_contig17872.1.1|Name=mRNA_P-wetherbeei_contig17872.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=354bp|location=Sequence derived from alignment at P-wetherbeei_contig17872:373..1325+ (Phaeothamnion wetherbeei SAG_119_79)
GACTTTTTATTCAACCGATGGAAGCAACACAATGGAATACTGCAACGCTT
TGTGGAGCCAAAAGGAACCAGAAACGCGCTGGTGCACGCCGTGTGGTCGC
CAAAGGTGTGCCTGCTGGAGCGGCGCGTCAACACGCGGCAGCTCCACGAC
AGCCGCTTCGGCCTCAGCGAGAGAGCTGTCACGTTCGACGGGCCTGACGC
CTTTAGCCGTTCGTGCCCGCTGCGCGGGTCGGTGCTGCCCAGCGAGATTC
AGCGGGTGTGCGAAGCAGTGGCGGCCCACGTGGCAGAAGTGTCCTACCAA
AAGCAGCAGATCCGCAGCATGGTCCTCAGCTTCAAGGTAGGTTCGCCGCC
CTAG
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