mRNA_P-wetherbeei_contig17860.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17860.1.1
Unique NamemRNA_P-wetherbeei_contig17860.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17860.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17860contigP-wetherbeei_contig17860:147..1065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog157072.XP_008880662.1
PFAMsAnk_2,Ank_4
Model size628
Max annot lvl2759|Eukaryota
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.1e-05
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size627
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186129.3094165-CDS-P-wetherbeei_contig17860:146..5091683186129.3094165-CDS-P-wetherbeei_contig17860:146..509Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17860 147..509 -
1683186129.3207822-CDS-P-wetherbeei_contig17860:801..10651683186129.3207822-CDS-P-wetherbeei_contig17860:801..1065Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17860 802..1065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17860.1.1prot_P-wetherbeei_contig17860.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17860 147..1065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17860.1.1

>prot_P-wetherbeei_contig17860.1.1 ID=prot_P-wetherbeei_contig17860.1.1|Name=mRNA_P-wetherbeei_contig17860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=209bp
NLFSGIITSYQEGCPAKDFTDGDLAAELCHLGLLRFMGADAIFSVKAMDR
AANISILKWLQAHREEGCSGAAVLNAAKNGRVEEVVWLLENRREGSAWAA
LDAAAAAGHVSVLAAILDLLPPDPADLAGLSCSRRIDAAARNGHVAVIRY
LRARRGALETCTAAAVDSAAANGHLDVLELLHQYSWPAAPTTTAVAAAGP
AAAAAGPAA
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mRNA from alignment at P-wetherbeei_contig17860:147..1065-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17860.1.1 ID=mRNA_P-wetherbeei_contig17860.1.1|Name=mRNA_P-wetherbeei_contig17860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=919bp|location=Sequence derived from alignment at P-wetherbeei_contig17860:147..1065- (Phaeothamnion wetherbeei SAG_119_79)
AACCTTTTCTCTGGGATTATCACTTCGTATCAGGAGGGATGCCCTGCCAA
AGACTTCACCGACGGCGATCTCGCAGCAGAGCTGTGCCATCTCGGGCTTC
TCCGGTTCATGGGCGCGGACGCCATCTTCTCCGTTAAGGCCATGGACAGG
GCCGCGAACATCTCCATCCTCAAATGGCTCCAGGCGCACAGAGAAGAGGG
ATGCAGCGGCGCCGCGGTTTTGAATGCCGCGAAAAATGGACGCGTTGAAG
AGGTCGTCTGGCTGGTGAGCTCACCGCGGCTGTGAAGTGTTTTGTCGGTG
TCATCTGTCCTCATCGTCGTCTTTTGCGTCTTTCAGCTGTCTTCGCTTGT
CGAGGATGAGGAAGAGGGAATTGTGGACGTTGGCGCGTGTATGGTTGCCA
TTCGGTGTTGATCTGGTGCGACTATCAGTTTCACGCCTCATCGCACCTTC
GATCCCGTTGGCGCGCCGTAACCACTTGTATCTGTGCCACCACGTCTGTC
CCTCGGCTGCCATCCTGACTGTCGGGCCACCCGCCGCTCCTACTGCACGC
AAAAAGCTGGAGAACCGCCGGGAGGGGAGTGCATGGGCGGCGCTGGACGC
CGCGGCGGCCGCCGGGCACGTTTCGGTCCTCGCCGCGATCCTCGACCTGC
TGCCGCCAGACCCGGCCGACCTGGCGGGGCTCTCCTGCAGCAGGCGGATA
GACGCCGCCGCCCGCAACGGCCACGTCGCCGTCATCCGTTACCTGCGGGC
GCGGCGCGGCGCGCTGGAGACTTGCACCGCTGCCGCCGTCGACAGCGCCG
CCGCGAACGGCCACCTCGACGTCTTGGAGCTCCTCCACCAGTACTCGTGG
CCAGCGGCGCCGACGACGACGGCGGTGGCGGCGGCTGGGCCGGCGGCGGC
GGCGGCGGGACCGGCAGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17860:147..1065-

>mRNA_P-wetherbeei_contig17860.1.1 ID=mRNA_P-wetherbeei_contig17860.1.1|Name=mRNA_P-wetherbeei_contig17860.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=627bp|location=Sequence derived from alignment at P-wetherbeei_contig17860:147..1065- (Phaeothamnion wetherbeei SAG_119_79)
AACCTTTTCTCTGGGATTATCACTTCGTATCAGGAGGGATGCCCTGCCAA
AGACTTCACCGACGGCGATCTCGCAGCAGAGCTGTGCCATCTCGGGCTTC
TCCGGTTCATGGGCGCGGACGCCATCTTCTCCGTTAAGGCCATGGACAGG
GCCGCGAACATCTCCATCCTCAAATGGCTCCAGGCGCACAGAGAAGAGGG
ATGCAGCGGCGCCGCGGTTTTGAATGCCGCGAAAAATGGACGCGTTGAAG
AGGTCGTCTGGCTGCTGGAGAACCGCCGGGAGGGGAGTGCATGGGCGGCG
CTGGACGCCGCGGCGGCCGCCGGGCACGTTTCGGTCCTCGCCGCGATCCT
CGACCTGCTGCCGCCAGACCCGGCCGACCTGGCGGGGCTCTCCTGCAGCA
GGCGGATAGACGCCGCCGCCCGCAACGGCCACGTCGCCGTCATCCGTTAC
CTGCGGGCGCGGCGCGGCGCGCTGGAGACTTGCACCGCTGCCGCCGTCGA
CAGCGCCGCCGCGAACGGCCACCTCGACGTCTTGGAGCTCCTCCACCAGT
ACTCGTGGCCAGCGGCGCCGACGACGACGGCGGTGGCGGCGGCTGGGCCG
GCGGCGGCGGCGGCGGGACCGGCAGCG
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