mRNA_P-wetherbeei_contig17850.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17850.1.1
Unique NamemRNA_P-wetherbeei_contig17850.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17850.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17850contigP-wetherbeei_contig17850:5..1220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size649
Hectar predicted targeting categorysignal peptide
Exons2
Cds size504
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.97755-UTR-P-wetherbeei_contig17850:4..1491683186128.97755-UTR-P-wetherbeei_contig17850:4..149Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17850 5..149 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.9877129-CDS-P-wetherbeei_contig17850:149..2061683186128.9877129-CDS-P-wetherbeei_contig17850:149..206Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17850 150..206 +
1683186128.9992626-CDS-P-wetherbeei_contig17850:773..12201683186128.9992626-CDS-P-wetherbeei_contig17850:773..1220Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17850 774..1220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17850.1.1prot_P-wetherbeei_contig17850.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17850 150..1220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17850.1.1

>prot_P-wetherbeei_contig17850.1.1 ID=prot_P-wetherbeei_contig17850.1.1|Name=mRNA_P-wetherbeei_contig17850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MPFLKALVFGLSALLLCRHGVWAVSCASGPDQWPNVVAAWNTIGPYDVKV
WPDDGFRGTPCLYSCTPAEAGVTLTCEVKNDNDRLCKAEGLNGVSSFMMG
TQIREVRLYAYQEGTRFMGTMVRANQGFYFPLGTSTMSGGCYDFKFGLST
YPGNDRLASMLIHPFPA*
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mRNA from alignment at P-wetherbeei_contig17850:5..1220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17850.1.1 ID=mRNA_P-wetherbeei_contig17850.1.1|Name=mRNA_P-wetherbeei_contig17850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-wetherbeei_contig17850:5..1220+ (Phaeothamnion wetherbeei SAG_119_79)
AACGCGAAATACCAACTGGCCGTCAGGCGCGCCGCACGGCAACATGTTCC
ATCATCTTCAAATTTTGCCGTGACTGCAGACACGGCTGAAATCAAGAAGG
CAGGCGGCCATCAGTCCAAGCACAATCTCATCTCCCGAATAGACGATGCC
CTTCTTGAAGGCACTCGTGTTCGGTCTCTCTGCTCTTCTGCTCTGTCGGC
ATGTGCGTCACACATGGCAGGGGCGTGGGGAAGCTAATGCTAAGGCCGAA
TTTGTTTCTATTGCGCGTTTTTGCCATCCGCCATTCGTTTCGAGTGAGGC
TCTCCCTACTCCTGGATTGCTTCGCACCTGCATCCCATATTGAATCTGAG
TCCACAAAGCCGCAACTCCACCAATCAAGTCGATGTCTCCTACGTTGCGC
TTCCTGGTGTTCGGCTCCTTGCTTTGCTCTAGTGCTCCGTCAAAATGTTC
GTTAAACCGTTTGTGCGGAGGGGCGGCCGGCCGACTGCCTACGTAGCCGA
CATTAAGCGATCCGCGTTTCTGCTTCCTCAACCACAATTGCTGTATCTAG
GCATGCGTCATGGCTCCATCAACTGCGAAGGTGTTTGCGGTTTCTAACCT
CGCGACACATGAATGGCCTCTTGGCATTTTTATCGCTCGCGTTAATCGTG
CAGCCATCCTCGCGACTCGGCAGCGCACATCATCGATCTATAAAGAGCAC
TAACGCCGCTTGCCCCGTCCCGCCTGGCGGCCGTGCGCAACCTGCCCGTC
CCTCGCTCCTCCTTCACAGGGTGTCTGGGCAGTGTCCTGCGCTTCTGGTC
CCGATCAATGGCCGAATGTAGTGGCAGCATGGAACACAATAGGCCCGTAT
GACGTGAAAGTTTGGCCGGATGACGGCTTCCGAGGGACGCCCTGTCTATA
CAGTTGCACGCCCGCGGAGGCCGGGGTTACTCTGACATGCGAAGTAAAAA
ACGACAACGACCGCCTGTGTAAAGCAGAGGGACTTAATGGCGTGAGCAGC
TTCATGATGGGAACCCAAATCCGGGAGGTGAGGCTCTATGCATACCAGGA
GGGGACCAGATTTATGGGAACGATGGTACGTGCCAACCAGGGCTTCTACT
TCCCTCTCGGCACTTCGACCATGAGCGGCGGCTGCTACGACTTCAAGTTC
GGTCTTTCTACCTACCCAGGGAACGATAGATTGGCGAGCATGCTCATTCA
CCCGTTTCCTGCGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17850:5..1220+

>mRNA_P-wetherbeei_contig17850.1.1 ID=mRNA_P-wetherbeei_contig17850.1.1|Name=mRNA_P-wetherbeei_contig17850.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig17850:5..1220+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCCTTCTTGAAGGCACTCGTGTTCGGTCTCTCTGCTCTTCTGCTCTG
TCGGCATGGTGTCTGGGCAGTGTCCTGCGCTTCTGGTCCCGATCAATGGC
CGAATGTAGTGGCAGCATGGAACACAATAGGCCCGTATGACGTGAAAGTT
TGGCCGGATGACGGCTTCCGAGGGACGCCCTGTCTATACAGTTGCACGCC
CGCGGAGGCCGGGGTTACTCTGACATGCGAAGTAAAAAACGACAACGACC
GCCTGTGTAAAGCAGAGGGACTTAATGGCGTGAGCAGCTTCATGATGGGA
ACCCAAATCCGGGAGGTGAGGCTCTATGCATACCAGGAGGGGACCAGATT
TATGGGAACGATGGTACGTGCCAACCAGGGCTTCTACTTCCCTCTCGGCA
CTTCGACCATGAGCGGCGGCTGCTACGACTTCAAGTTCGGTCTTTCTACC
TACCCAGGGAACGATAGATTGGCGAGCATGCTCATTCACCCGTTTCCTGC
GTAA
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