mRNA_P-wetherbeei_contig17837.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A3C2B6D5_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6D5_9ACTN) HSP 1 Score: 127 bits (318), Expect = 8.470e-36 Identity = 61/106 (57.55%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
M + C +GG PVL V G++D++++ T DHL + + H GAE+ VDLDGV +LDDT LG+LLGAAGRARE GG++VVVCT P LL+RFA T LDRA++VR+R+
Sbjct: 1 MDVRCTHSTVGGRPVLHVSGEIDLSSLPTLHDHLSRMVLEHPGAEVTVDLDGVYALDDTGLGMLLGAAGRAREHGGDVVVVCTAPHLLQRFALTGLDRALEVRARV 106
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A6N2DN81_9ACTN (Anti-sigma factor antagonist n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A6N2DN81_9ACTN) HSP 1 Score: 115 bits (288), Expect = 2.680e-31 Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
M + +L ++ PVL V G +D+AT+ T HL +AI AH G L VDLD VT++DD LGVLLGAAGRAR+ GG+LVVV ++ RL RF T LDRA+DVR RL
Sbjct: 1 MDLHARLDLVASRPVLSVDGVIDLATIPTLHSHLARAIVAHPGVTLTVDLDAVTAVDDCGLGVLLGAAGRARDAGGDLVVVASSERLRGRFRLTGLDRAVDVRERL 106
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A539DXQ5_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DXQ5_9ACTN) HSP 1 Score: 112 bits (281), Expect = 3.300e-30 Identity = 58/107 (54.21%), Postives = 76/107 (71.03%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
M + C+ VI+G PVL V G+LD+A++ + D +++ H G + +DLDGV+ LDD LGVLLGAAGRARE G++V+VCT RLLERF + L RAIDVR RLA
Sbjct: 1 MDLLCRSVIVGELPVLVVSGELDLASIPLFSDAVVRLTNEHIGVTVAIDLDGVSVLDDAGLGVLLGAAGRAREHDGDVVLVCTGKRLLERFERSGLMRAIDVRQRLA 107
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A6I3F6W6_9ACTN (Anti-sigma factor antagonist n=2 Tax=root TaxID=1 RepID=A0A6I3F6W6_9ACTN) HSP 1 Score: 111 bits (277), Expect = 3.460e-29 Identity = 58/107 (54.21%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
M + L +G +PVL + G++D++TV DHL +A++ H G L VDLDGV +LDDT LGVLLGAAGR RE GELV+VCT RL+ RF T LDRAI V +R++
Sbjct: 29 MELIGHLTSLGTSPVLHLDGEIDLSTVPQLHDHLARAMSLHIGHTLFVDLDGVAALDDTGLGVLLGAAGRCREQHGELVLVCTAERLVARFKLTGLDRAIQVVARVS 135
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A3C1LAZ5_9ACTN (Anti-sigma factor antagonist (Fragment) n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A3C1LAZ5_9ACTN) HSP 1 Score: 108 bits (271), Expect = 1.300e-28 Identity = 54/93 (58.06%), Postives = 74/93 (79.57%), Query Frame = 1
Query: 43 VLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
VLQ G++D+AT+ + D L +AI+ H GAE+ VDLDGVT+LDDT +G+LLGAAGRARE GG+L++VC + RL RF+ T LDRA+ V++R+A
Sbjct: 1 VLQASGEIDLATLPYFHDQLNRAISLHVGAEVFVDLDGVTALDDTGIGMLLGAAGRAREHGGDLLLVCNSDRLRSRFSLTGLDRAMVVQARVA 93
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7W1LS82_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1LS82_9ACTN) HSP 1 Score: 105 bits (263), Expect = 5.550e-26 Identity = 55/104 (52.88%), Postives = 73/104 (70.19%), Query Frame = 1
Query: 4 SMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSR 315
S+ C + + G V+ V G +D+ATVAT RDH+L+ I+ H GA +++DLD V SLDD LGVLLG AGRARE GG+L +V + R+ +R A T DRA+DV SR
Sbjct: 3 SLRCTVRDVEGTWVVDVSGSVDLATVATLRDHVLEVISTHAGATIVIDLDEVVSLDDVGLGVLLGLAGRAREMGGDLRLVSSPGRVRDRLAITGADRAVDVSSR 106
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: UPI000E353DC8 (STAS domain-containing protein n=1 Tax=Desertimonas flava TaxID=2064846 RepID=UPI000E353DC8) HSP 1 Score: 99.8 bits (247), Expect = 5.720e-25 Identity = 50/98 (51.02%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 28 IGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
+ G V+++ G LD++T+ T ++ L++AI ++ GA + VDLDG+ LDD LGVL+GAAGRAR GG++VV+CT LL RF+ TRLDRAI + LA
Sbjct: 9 VAGTAVVELAGRLDLSTLPTLQNALVRAIGSNIGATVAVDLDGLEGLDDVGLGVLVGAAGRARGSGGDIVVICTRDALLRRFSITRLDRAITILPNLA 106
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A4P5RXF1_9ACTN (Anti-sigma factor antagonist n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A4P5RXF1_9ACTN) HSP 1 Score: 98.6 bits (244), Expect = 1.420e-24 Identity = 50/107 (46.73%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
M +S + +G VL V GD+D+AT+ + D + + ++ G+ ++VDLDG S DD ALG+LLGAAG+AR GG++VVVCT PRL ER T D+A+ VR +A
Sbjct: 1 MELSLRRSAVGAQQVLSVSGDIDVATLPRFADSITRLLSDAIGSIVVVDLDGAQSFDDAALGLLLGAAGKARTAGGDVVVVCTEPRLRERLMITGFDKAVIVRHSIA 107
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7K1B7S0_9ACTN (Anti-sigma factor antagonist n=2 Tax=root TaxID=1 RepID=A0A7K1B7S0_9ACTN) HSP 1 Score: 97.1 bits (240), Expect = 5.430e-24 Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRL 318
M + C+ + +GG L ++GDLD+A+V + L + + RG + VDLDG+ LDD LGVLLG AGRARE GG+LV+VCT R RF + L RAI+VR RL
Sbjct: 1 MDLRCRTLQLGGTTALVLEGDLDLASVPALHNALGRLLNDARGDVVAVDLDGLDVLDDAGLGVLLGFAGRAREAGGDLVLVCTNERHRARFELSGLARAIEVRDRL 106
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Match: A0A7W1UVT2_9ACTN (Anti-sigma factor antagonist n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1UVT2_9ACTN) HSP 1 Score: 93.6 bits (231), Expect = 1.370e-22 Identity = 47/107 (43.93%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLDGVTSLDDTALGVLLGAAGRAREGGGELVVVCTTPRLLERFATTRLDRAIDVRSRLA 321
MS+ C ++ ++ + G +D++TVA RDHLL+ ++ G +++DLD V ++DD LG+LLG AGRARE GG+L +VC RL +R A T DRA+ V S A
Sbjct: 1 MSLKCSDELLDDCVIVTLAGVVDLSTVAALRDHLLRVVSERPGGTVVIDLDEVMAVDDAGLGILLGLAGRAREHGGDLRLVCAPGRLRDRLALTGADRAVAVSSNWA 107 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17837.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig17837.2.1 >prot_P-wetherbeei_contig17837.2.1 ID=prot_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp MSMSCKLVIIGGAPVLQVQGDLDMATVATWRDHLLKAITAHRGAELLVDLback to top mRNA from alignment at P-wetherbeei_contig17837:420..743+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig17837.2.1 ID=mRNA_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:420..743+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig17837:420..743+ >mRNA_P-wetherbeei_contig17837.2.1 ID=mRNA_P-wetherbeei_contig17837.2.1|Name=mRNA_P-wetherbeei_contig17837.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig17837:420..743+ (Phaeothamnion wetherbeei SAG_119_79)back to top |