mRNA_P-wetherbeei_contig17820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17820.1.1
Unique NamemRNA_P-wetherbeei_contig17820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17820contigP-wetherbeei_contig17820:53..977 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size925
Hectar predicted targeting categorysignal peptide
Exons1
Cds size480
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.2537308-UTR-P-wetherbeei_contig17820:52..531683186128.2537308-UTR-P-wetherbeei_contig17820:52..53Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17820 53..53 +
1683186128.285207-UTR-P-wetherbeei_contig17820:533..9771683186128.285207-UTR-P-wetherbeei_contig17820:533..977Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17820 534..977 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186128.2768693-CDS-P-wetherbeei_contig17820:53..5331683186128.2768693-CDS-P-wetherbeei_contig17820:53..533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17820 54..533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17820.1.1prot_P-wetherbeei_contig17820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17820 54..533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17820.1.1

>prot_P-wetherbeei_contig17820.1.1 ID=prot_P-wetherbeei_contig17820.1.1|Name=mRNA_P-wetherbeei_contig17820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=160bp
MLHASFWLILSVPPRCSCCPSQKKAKGAKLSSIWRAEKDDTSCALISDSA
WTAGIVYATRSSLLSMTCTASTLNKQRCEQWFLQRNAHAALLRKMLGTDL
LLRGWRHLPETWAASCISRSAVFGAARSKRSPESCARSRTPAGSQAAPSC
VALANGPLP*
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mRNA from alignment at P-wetherbeei_contig17820:53..977+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17820.1.1 ID=mRNA_P-wetherbeei_contig17820.1.1|Name=mRNA_P-wetherbeei_contig17820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=925bp|location=Sequence derived from alignment at P-wetherbeei_contig17820:53..977+ (Phaeothamnion wetherbeei SAG_119_79)
CATGCTCCATGCCAGTTTCTGGCTGATCCTTTCAGTGCCCCCTCGATGCT
CATGTTGCCCCAGCCAAAAAAAGGCAAAAGGAGCCAAACTAAGCAGCATA
TGGAGAGCTGAGAAGGACGACACGAGCTGCGCTCTCATTTCTGATTCAGC
ATGGACTGCCGGAATCGTTTACGCGACAAGGTCGTCCCTTCTGTCGATGA
CGTGCACAGCAAGCACATTAAACAAACAGCGGTGTGAGCAATGGTTCCTG
CAACGAAACGCTCATGCTGCACTGCTACGAAAAATGCTTGGCACCGACCT
TCTGCTACGCGGATGGCGCCATCTGCCTGAGACATGGGCAGCATCCTGTA
TCTCCCGTTCAGCAGTCTTTGGCGCCGCTCGGAGCAAGCGCAGCCCAGAA
TCTTGTGCCCGTTCACGGACACCGGCGGGCTCGCAAGCGGCGCCGTCGTG
TGTCGCACTTGCAAACGGGCCCCTCCCCTAGCCGGCGAGCGCTGCCCAGG
CCTCCTCCTGCCGCTGGAGCCGCGACGACGTGCAGGTGAGTTGGGGCCTC
GAACAGAATCGCTGCCTCATCCGCTTTGAACGGTTCAGGCGCCGCGACCA
CGGGGTCAACTGTGTCTGCCTGTCGACACGAACTGTTTCACGGAGTTTTT
ATCTTTTTACGATAGGGAAATGCCGAAAATTGTTGGGCGTCAATTTGCTC
TTGCTGGGTTGACAGGGCTCGAATAGAACGTTTCCTTTTTGAACGTCAGT
TACAAAGCACCAGAGATGGGCCGGCACCGCCTGCACGGTGGGATGTGAAC
GGCGAGCCCCACAATTCTTATCTTGGCCAAAGTGACACAACGTGGACTGC
TTATAGGATCTTCGACTTTTTGGGAAGACTGCTGGAAGCCCAGCGAGCAT
GGAAAGAAAAGAAGCAACCGCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17820:53..977+

>mRNA_P-wetherbeei_contig17820.1.1 ID=mRNA_P-wetherbeei_contig17820.1.1|Name=mRNA_P-wetherbeei_contig17820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=480bp|location=Sequence derived from alignment at P-wetherbeei_contig17820:53..977+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCCATGCCAGTTTCTGGCTGATCCTTTCAGTGCCCCCTCGATGCTC
ATGTTGCCCCAGCCAAAAAAAGGCAAAAGGAGCCAAACTAAGCAGCATAT
GGAGAGCTGAGAAGGACGACACGAGCTGCGCTCTCATTTCTGATTCAGCA
TGGACTGCCGGAATCGTTTACGCGACAAGGTCGTCCCTTCTGTCGATGAC
GTGCACAGCAAGCACATTAAACAAACAGCGGTGTGAGCAATGGTTCCTGC
AACGAAACGCTCATGCTGCACTGCTACGAAAAATGCTTGGCACCGACCTT
CTGCTACGCGGATGGCGCCATCTGCCTGAGACATGGGCAGCATCCTGTAT
CTCCCGTTCAGCAGTCTTTGGCGCCGCTCGGAGCAAGCGCAGCCCAGAAT
CTTGTGCCCGTTCACGGACACCGGCGGGCTCGCAAGCGGCGCCGTCGTGT
GTCGCACTTGCAAACGGGCCCCTCCCCTAG
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