mRNA_P-wetherbeei_contig17814.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17814.1.1
Unique NamemRNA_P-wetherbeei_contig17814.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: D8LKB4_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKB4_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.630e-42
Identity = 79/105 (75.24%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 QACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKKASKSS--AAGGSAAKR 309
            QACVQR+IK+VLP+ VQIGKDAKAAF+R+AGIFIMYLTACANDFCR+AKRQTISA DV+QA++ELEF ELEEPL+EYL+ +RR+A+AKK SK++  AAG +AAK+
Sbjct:   13 QACVQRVIKSVLPDNVQIGKDAKAAFSRSAGIFIMYLTACANDFCREAKRQTISAQDVMQAIKELEFGELEEPLKEYLDQYRREASAKKQSKAAMGAAGPAAAKK 117
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A6V1RK43_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RK43_HETAK)

HSP 1 Score: 124 bits (310), Expect = 7.040e-34
Identity = 59/79 (74.68%), Postives = 72/79 (91.14%), Query Frame = 1 
Query:    1 QACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLE 237
            QAC+QRI+KAVLP+ +QIGKDAKAAFARAAGIFIMYLTACANDFCR++KRQTI+  DV+ A+ ELEF +L EPL+++LE
Sbjct:   40 QACIQRIVKAVLPDNIQIGKDAKAAFARAAGIFIMYLTACANDFCRESKRQTITGPDVMMAISELEFHDLVEPLKDFLE 118
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A7S2DWQ9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DWQ9_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.260e-29
Identity = 57/88 (64.77%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKK 267
            ACVQRIIK VLP+  QI K++K AF++AAGIFI+YLT CANDFC++ KR TIS+ADVL A++ELEF +L  PL E+L  +R+D NAKK
Sbjct:   29 ACVQRIIKGVLPDSCQITKESKTAFSKAAGIFIIYLTTCANDFCKEGKRSTISSADVLAALRELEFHDLIGPLEEFLAHYRQDTNAKK 116
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A7S2SN07_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN07_9STRA)

HSP 1 Score: 112 bits (281), Expect = 7.380e-29
Identity = 56/89 (62.92%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 QACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKK 267
            QACVQRIIK+ LP+  QI K++KAAF++AAGIFI+YLT CANDFC++ KR TIS+ADV+ A++ELEF +L  PL E+L  +R+DA+ KK
Sbjct:   75 QACVQRIIKSALPDNCQITKESKAAFSKAAGIFIIYLTTCANDFCKENKRSTISSADVMSAMRELEFHDLMGPLEEFLTNYRKDASTKK 163
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: F0YMP8_AURAN (CBFD_NFYB_HMF domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMP8_AURAN)

HSP 1 Score: 103 bits (257), Expect = 8.340e-27
Identity = 50/88 (56.82%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKK 267
            AC+ RI+KA LP+  Q+ ++AK AFA+AAGIFI+YLT CAND C+D KRQT+SAADVLQA  ELE  E+++ L+++L  FR+    K+
Sbjct:    7 ACINRIVKAALPDSTQVTREAKTAFAKAAGIFIIYLTTCANDVCKDKKRQTVSAADVLQAFAELELEEMKDTLQDFLAHFRQAEGTKR 94
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A7S3HH50_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH50_9STRA)

HSP 1 Score: 103 bits (256), Expect = 4.230e-26
Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKK 267
            ACV R++KA LPE + + KDA+AAF RAAGIFI YLT C+NDFCR++KR TI   DV+ A++EL F + E+PL E+LE +++D+  +K
Sbjct:   21 ACVSRVMKAALPENILLTKDARAAFVRAAGIFIFYLTHCSNDFCRESKRATIFPQDVMAALRELGFEDFEKPLEEFLEAYKKDSEQRK 108
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A1E7FAU9_9STRA (CBFD_NFYB_HMF domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAU9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.090e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKK 267
            ACV+RI+K  LP    +GKDA AAFARA+GIFI+YLTACANDF R+ +RQTI+A DVL A++ELEF E    L  +LE +R     KK
Sbjct:    3 ACVRRILKKTLPSSSNVGKDAVAAFARASGIFIIYLTACANDFARENRRQTITANDVLAAIKELEFDEFSPELTSFLEGYREAEKNKK 90
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A7S1UF20_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UF20_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 7.570e-24
Identity = 52/94 (55.32%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKKASKSSA 285
            A V++I+K  LP+ V++G D   AFA+AAGIFI YLT CANDFCR+ KR TI+A D++ A++ELEF E+ EPL+++LEL R   + KKA K+ A
Sbjct:   49 ASVRKIVKGALPDGVKMGADTTQAFAKAAGIFIHYLTTCANDFCRENKRATITANDIVAALKELEFEEMVEPLQKFLELHRAAESEKKAEKAKA 142
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: B7FT95_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FT95_PHATC)

HSP 1 Score: 99.0 bits (245), Expect = 1.750e-23
Identity = 53/95 (55.79%), Postives = 68/95 (71.58%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKKASKSSAA 288
            ACV+RI+K  LP    +GKDA AAFARA+GIFI+YLTACANDF R  KRQTI+A DVL A++EL+F +    +  +LE +R     KK +K+ AA
Sbjct:   24 ACVRRILKHTLPSSTNVGKDASAAFARASGIFIIYLTACANDFARTHKRQTITANDVLAAIKELDFDDFSTDMMSFLESYRVSEKHKKDAKAKAA 118
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BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Match: A0A7S2YQQ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQQ1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.770e-23
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    4 ACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKRQTISAADVLQAVQELEFSELEEPLREYLELFR 246
            ACV+RI+K  LP    +GKDA AAFARA GIFI+Y+TACANDF R+ KRQTI+AADVL AV+EL+F E    +  +LE  R
Sbjct:   57 ACVRRILKHALPSSTSVGKDASAAFARACGIFIIYITACANDFAREHKRQTITAADVLAAVRELDFEEFTPDMTRFLEHHR 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKB4_ECTSI1.630e-4275.24CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
A0A6V1RK43_HETAK7.040e-3474.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DWQ9_9STRA5.260e-2964.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SN07_9STRA7.380e-2962.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YMP8_AURAN8.340e-2756.82CBFD_NFYB_HMF domain-containing protein (Fragment)... [more]
A0A7S3HH50_9STRA4.230e-2655.68Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A1E7FAU9_9STRA1.090e-2459.09CBFD_NFYB_HMF domain-containing protein (Fragment)... [more]
A0A7S1UF20_9STRA7.570e-2455.32Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B7FT95_PHATC1.750e-2355.79Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2YQQ1_9STRA1.770e-2361.73Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17814contigP-wetherbeei_contig17814:467..1174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LKB4
Preferred namePOLE3
PFAMsCBFD_NFYB_HMF
Model size309
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02326
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000123,GO:0000228,GO:0000278,GO:0000731,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003824,GO:0003887,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005671,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006271,GO:0006272,GO:0006281,GO:0006301,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006342,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0008622,GO:0008623,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010212,GO:0010332,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019985,GO:0022402,GO:0022607,GO:0022616,GO:0031010,GO:0031055,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032502,GO:0032991,GO:0033260,GO:0033554,GO:0034061,GO:0034080,GO:0034401,GO:0034508,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034724,GO:0034728,GO:0036211,GO:0040029,GO:0042276,GO:0042575,GO:0042766,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043596,GO:0043933,GO:0043966,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0044877,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0061641,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070603,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090399,GO:0097159,GO:0097549,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902292,GO:1902315,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902969,GO:1902975,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue2.67e-43
EggNOG OGsKOG0870@1|root,KOG0870@2759|Eukaryota
Ec32 ortholog descriptionDPB4 class protein with histone-like transcription factor (NF-YB subunit) domain
Ec32 orthologEc-01_009630.1
EC2.7.7.7
DescriptionDNA-directed DNA polymerase activity
Cds size309
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186127.9953964-CDS-P-wetherbeei_contig17814:466..5271683186127.9953964-CDS-P-wetherbeei_contig17814:466..527Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17814 467..527 -
1683186128.0088882-CDS-P-wetherbeei_contig17814:926..11741683186128.0088882-CDS-P-wetherbeei_contig17814:926..1174Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17814 927..1174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17814.1.1prot_P-wetherbeei_contig17814.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17814 467..1174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17814.1.1

>prot_P-wetherbeei_contig17814.1.1 ID=prot_P-wetherbeei_contig17814.1.1|Name=mRNA_P-wetherbeei_contig17814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=103bp
QACVQRIIKAVLPEQVQIGKDAKAAFARAAGIFIMYLTACANDFCRDAKR
QTISAADVLQAVQELEFSELEEPLREYLELFRRDANAKKASKSSAAGGSA
AKR
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mRNA from alignment at P-wetherbeei_contig17814:467..1174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17814.1.1 ID=mRNA_P-wetherbeei_contig17814.1.1|Name=mRNA_P-wetherbeei_contig17814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig17814:467..1174- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCATGTGTGCAGCGCATCATCAAGGCGGTGTTGCCGGAGCAGGTCCA
GATCGGCAAGGACGCCAAGGCGGCCTTCGCGCGCGCCGCGGGCATCTTCA
TCATGTATCTGACGGCGTGCGCCAACGATTTCTGCCGCGACGCGAAGCGG
CAGACCATTTCGGCGGCCGACGTGCTGCAGGCGGTGCAGGAGCTTGAGTT
CTCCGAGCTCGAGGAGCCACTGCGCGAGTACCTCGAACTCTTCCGCAGGT
TCGTAACGCTAAGAAAGGTCAAACGTAACCGAATATGTGAAGATGGAAAC
TGGACCGAGATCGGCGGTCTTGGACCGGAGCAGTTGGGGGGCGGGCACGA
TTTTATTGAAAACGGTGAAAACTTTCTGTTTTGTATCGGAACCGCTGCCA
TCATCGGACGTGTTCTCCGCGGCCTTCCGACGCTTTCTCCTTCACTATCG
CGGCGCGTTGACCGATTGACCGAGCAGTTCGATTGAGAGATAGATCGCAG
CCTTTCCCTTTTTCTGTTGATTCATTCCTTGCCCTCTCCGTGTCTCGTCT
CTGTCCGCTCGTTCGATTTGGTCCCGTTCTGTTTTGTCCCCTTTCCGCCT
CGGTCTTGCCACGACGCGACGCGTACGGTCTCGACCCGACACGACAGGGA
CGCCAACGCCAAGAAAGCGAGCAAGAGCAGCGCGGCTGGCGGCTCGGCAG
CGAAGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17814:467..1174-

>mRNA_P-wetherbeei_contig17814.1.1 ID=mRNA_P-wetherbeei_contig17814.1.1|Name=mRNA_P-wetherbeei_contig17814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=309bp|location=Sequence derived from alignment at P-wetherbeei_contig17814:467..1174- (Phaeothamnion wetherbeei SAG_119_79)
CAGGCATGTGTGCAGCGCATCATCAAGGCGGTGTTGCCGGAGCAGGTCCA
GATCGGCAAGGACGCCAAGGCGGCCTTCGCGCGCGCCGCGGGCATCTTCA
TCATGTATCTGACGGCGTGCGCCAACGATTTCTGCCGCGACGCGAAGCGG
CAGACCATTTCGGCGGCCGACGTGCTGCAGGCGGTGCAGGAGCTTGAGTT
CTCCGAGCTCGAGGAGCCACTGCGCGAGTACCTCGAACTCTTCCGCAGGG
ACGCCAACGCCAAGAAAGCGAGCAAGAGCAGCGCGGCTGGCGGCTCGGCA
GCGAAGCGC
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