mRNA_P-wetherbeei_contig1779.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1779.2.1
Unique NamemRNA_P-wetherbeei_contig1779.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1779.2.1 vs. uniprot
Match: A0A7S0VET8_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VET8_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 1.820e-6
Identity = 35/102 (34.31%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:   10 PSSSFRFAWETLSTLFICYTAFVLPYRIAFVIDDTDADDGAPAAGRSGVETALVALEWVIEGFFFMDIVLRYNL-FP--SSDSSG----AIITDPLEIRQRY 294
            P S+ R AW+    + + YTAF++PY +AF       + G        ++ A +AL W ++  F +DIVL++N   P  S++  G    A ITD  EI +RY
Sbjct:  141 PYSAPRLAWDMFMAMLLLYTAFMVPYALAF-------ESGICQVNT--IDVAALALLWAVDVLFLIDIVLQFNTALPARSTEIKGQTEEAFITDRREIARRY 233
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BLAST of mRNA_P-wetherbeei_contig1779.2.1 vs. uniprot
Match: A0A078A493_STYLE (Cation channel family protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078A493_STYLE)

HSP 1 Score: 54.7 bits (130), Expect = 1.820e-6
Identity = 28/84 (33.33%), Postives = 47/84 (55.95%), Query Frame = 1 
Query:    4 LLPSSSFRFAWETLSTLFICYTAFVLPYRIAFVIDDTDADDGAPAAGRSGVETALVALEWVIEGFFFMDIVLRY-NLFPSSDSS 252
            L+P    +  W  ++ L + YTA  +PY++AF+ DD+D+       G SG       L+WV++  FF DI++ + + F +SD S
Sbjct:  493 LMPGDRSKQIWNMITILMLLYTALFMPYKVAFLDDDSDS-------GLSGT------LDWVVDSLFFTDIIITFFSAFEASDGS 563
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BLAST of mRNA_P-wetherbeei_contig1779.2.1 vs. uniprot
Match: A0A1V9ZR32_9STRA (Voltage-gated Ion Channel (VIC) Superfamily n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZR32_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.020e-5
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1 
Query:   10 PSSSFRFAWETLSTLFICYTAFVLPYRIAFVIDDTDADDGAPAAGRSGVETALVALEWVIEGFFFMDIVLRYNLFPSSDSSGAIITDPLEIRQRY 294
            P S FR  W+    L   Y AF LP+R  FV++             S V     ALE+ ++ F  +D+VLR+N F    +    +T  L +RQRY
Sbjct: 1732 PHSRFRELWDLFCLLITLYFAFALPFRAVFVLE------------WSPVVLIWFALEYCLDAFCLVDMVLRFNYFYEFKAGELQVTRAL-VRQRY 1813
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BLAST of mRNA_P-wetherbeei_contig1779.2.1 vs. uniprot
Match: A0A7S2BFI5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2BFI5_9EUKA)

HSP 1 Score: 49.7 bits (117), Expect = 7.050e-5
Identity = 34/105 (32.38%), Postives = 52/105 (49.52%), Query Frame = 1 
Query:    4 LLPSSSFRFAWETLSTLFICYTAFVLPYRIAFVIDDTDADDGAPAAGRSGVETA--------LVALEWVIEGFFFMDIVLRYNLFPSSDSSGAIITDPLEIRQRY 294
            LLP+ +FR AW+ +S + + Y A  LPYRIAF+         + +AG +G  T             +++++ FF  D+VL  N F +    G IIT   +I   Y
Sbjct:   10 LLPTDTFRTAWDLMSIILVLYIAAALPYRIAFM---------SVSAGTAGDITLSRVNHLDFFSLSDFLMDLFFLTDLVL--NFFTAYIIDGEIITSRRQIASHY 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1779.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S0VET8_9CRYP1.820e-634.31Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A078A493_STYLE1.820e-633.33Cation channel family protein n=1 Tax=Stylonychia ... [more]
A0A1V9ZR32_9STRA3.020e-533.68Voltage-gated Ion Channel (VIC) Superfamily n=1 Ta... [more]
A0A7S2BFI5_9EUKA7.050e-532.38Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1779contigP-wetherbeei_contig1779:5996..6295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog296587.XP_002503423.1
PFAMsIon_trans
Model size300
Max annot lvl2759|Eukaryota
KEGG koko:K21867
KEGG TC1.A.1.4
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.87e-06
EggNOG OGsCOG2202@1|root,KOG0501@2759|Eukaryota
Descriptionphosphorelay sensor kinase activity
Cds size300
COG categoryT
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.8481207-CDS-P-wetherbeei_contig1779:5995..62951683186126.8481207-CDS-P-wetherbeei_contig1779:5995..6295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1779 5996..6295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1779.2.1prot_P-wetherbeei_contig1779.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1779 5996..6295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1779.2.1

>prot_P-wetherbeei_contig1779.2.1 ID=prot_P-wetherbeei_contig1779.2.1|Name=mRNA_P-wetherbeei_contig1779.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=100bp
FLLPSSSFRFAWETLSTLFICYTAFVLPYRIAFVIDDTDADDGAPAAGRS
GVETALVALEWVIEGFFFMDIVLRYNLFPSSDSSGAIITDPLEIRQRYR*
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mRNA from alignment at P-wetherbeei_contig1779:5996..6295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1779.2.1 ID=mRNA_P-wetherbeei_contig1779.2.1|Name=mRNA_P-wetherbeei_contig1779.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig1779:5996..6295- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGCTGCCGAGCTCGTCCTTCCGCTTTGCATGGGAGACGCTAAGCAC
GCTCTTCATTTGCTACACCGCCTTCGTGCTCCCCTACCGCATCGCCTTTG
TGATCGACGACACTGACGCCGACGACGGCGCCCCTGCCGCCGGCCGCAGC
GGCGTCGAGACGGCCCTGGTCGCCCTGGAGTGGGTTATCGAGGGCTTCTT
CTTCATGGACATTGTGCTTAGGTACAACCTCTTTCCAAGCAGCGACTCAT
CCGGCGCCATCATCACCGACCCCCTCGAGATCCGGCAGCGCTACAGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1779:5996..6295-

>mRNA_P-wetherbeei_contig1779.2.1 ID=mRNA_P-wetherbeei_contig1779.2.1|Name=mRNA_P-wetherbeei_contig1779.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=300bp|location=Sequence derived from alignment at P-wetherbeei_contig1779:5996..6295- (Phaeothamnion wetherbeei SAG_119_79)
TTCCTGCTGCCGAGCTCGTCCTTCCGCTTTGCATGGGAGACGCTAAGCAC
GCTCTTCATTTGCTACACCGCCTTCGTGCTCCCCTACCGCATCGCCTTTG
TGATCGACGACACTGACGCCGACGACGGCGCCCCTGCCGCCGGCCGCAGC
GGCGTCGAGACGGCCCTGGTCGCCCTGGAGTGGGTTATCGAGGGCTTCTT
CTTCATGGACATTGTGCTTAGGTACAACCTCTTTCCAAGCAGCGACTCAT
CCGGCGCCATCATCACCGACCCCCTCGAGATCCGGCAGCGCTACAGGTAG
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