mRNA_P-wetherbeei_contig1778.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1778.1.1
Unique NamemRNA_P-wetherbeei_contig1778.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: D7G5Y2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y2_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 4.860e-51
Identity = 86/128 (67.19%), Postives = 104/128 (81.25%), Query Frame = 1 
Query:    1 QTVILLDLIQEDASLLVTIPSAVGVAIQAWKLVRSATLVGLGMYAAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFGT 384
            QTVILL LI+EDASLLVT+P+ VGV IQA+            +Y  GF +MTPQL+INYKL+SVAH+PWRF+CYR LNT IDDLFAFVI+MPT+HRLSCFRDDVVF ++LYQRWIYPVD++R  + G+
Sbjct:  304 QTVILLSLIEEDASLLVTVPAGVGVLIQAF------------VYTFGFVLMTPQLYINYKLKSVAHLPWRFLCYRSLNTVIDDLFAFVIRMPTMHRLSCFRDDVVFVVYLYQRWIYPVDESRPQDRGS 419
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A7S4FEL9_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FEL9_9EUGL)

HSP 1 Score: 153 bits (387), Expect = 2.140e-45
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:  109 TLVGLGMYAAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFG 381
            TLVG  +Y  GF MMTPQL+INYKL+SVAH+PWR   Y+ LNTFIDDLFAF+IKMPT+HRLSCFRDD++F ++LYQRWIYPVD TRVNEFG
Sbjct:   35 TLVG-AIYTFGFIMMTPQLFINYKLKSVAHLPWRTFVYKALNTFIDDLFAFIIKMPTLHRLSCFRDDLIFLVYLYQRWIYPVDTTRVNEFG 124
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: V5GGE7_IXORI (Putative conserved plasma membrane protein n=1 Tax=Ixodes ricinus TaxID=34613 RepID=V5GGE7_IXORI)

HSP 1 Score: 150 bits (378), Expect = 1.320e-44
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  139 GFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFGT 384
            GF MMTPQL+INYKL+SVAH+PWR + Y+FLNTFIDD+FAFVIKMPT++RL CFRDD+VF IFLYQRWIY VD TRVNEFGT
Sbjct:   24 GFIMMTPQLFINYKLKSVAHLPWRMLTYKFLNTFIDDIFAFVIKMPTMYRLGCFRDDIVFLIFLYQRWIYRVDPTRVNEFGT 105
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A7S0W2U2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W2U2_9CRYP)

HSP 1 Score: 149 bits (377), Expect = 1.990e-44
Identity = 65/85 (76.47%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:  127 MYAAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFG 381
            +Y  GF MMTPQL+INYKL+SVAH+PWR M Y+FLNT IDDLFAFVIKMPT+HRLSCFRDDV+F I++YQRW Y VD+TRVNE+G
Sbjct:   16 VYTFGFIMMTPQLFINYKLKSVAHLPWRAMVYKFLNTIIDDLFAFVIKMPTLHRLSCFRDDVIFLIYIYQRWAYSVDRTRVNEYG 100
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: UPI00077A2BF8 (cleft lip and palate transmembrane protein 1 homolog n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A2BF8)

HSP 1 Score: 154 bits (390), Expect = 2.900e-44
Identity = 74/105 (70.48%), Postives = 86/105 (81.90%), Query Frame = 1 
Query:   85 AWKLVRSAT--LVGLGMY---AAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFGT 384
            AW+LVRS    L+ +  Y   + GF MMTPQL+INYKL+SVAH+PWR M Y+ LNTFIDDLFAFVIKMPT++RL CFRDD+VFFI LYQRWIYP+D  RVNEFGT
Sbjct:  138 AWRLVRSLVHCLIFIPFYFCFSIGFIMMTPQLFINYKLKSVAHLPWRMMTYKALNTFIDDLFAFVIKMPTLYRLGCFRDDIVFFIALYQRWIYPIDPKRVNEFGT 242
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A6M2E3L3_9ACAR (Putative conserved plasma membrane protein n=1 Tax=Amblyomma tuberculatum TaxID=48802 RepID=A0A6M2E3L3_9ACAR)

HSP 1 Score: 150 bits (378), Expect = 3.660e-44
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  139 GFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFGT 384
            GF MMTPQL+INYKL+SVAH+PWR + Y+FLNTFIDD+FAFVIKMPT++RL CFRDD+VF IFLYQRWIY VD TRVNEFGT
Sbjct:   24 GFIMMTPQLFINYKLKSVAHLPWRMLTYKFLNTFIDDIFAFVIKMPTMYRLGCFRDDIVFLIFLYQRWIYRVDPTRVNEFGT 105
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A023FGA4_AMBCJ (Putative conserved plasma membrane protein n=1 Tax=Amblyomma cajennense TaxID=34607 RepID=A0A023FGA4_AMBCJ)

HSP 1 Score: 150 bits (378), Expect = 1.230e-43
Identity = 66/82 (80.49%), Postives = 75/82 (91.46%), Query Frame = 1 
Query:  139 GFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFGT 384
            GF MMTPQL+INYKL+SVAH+PWR + Y+FLNTFIDD+FAFVIKMPT++RL CFRDD+VF IFLYQRWIY VD TRVNEFGT
Sbjct:   63 GFIMMTPQLFINYKLKSVAHLPWRMLTYKFLNTFIDDIFAFVIKMPTMYRLGCFRDDIVFLIFLYQRWIYRVDPTRVNEFGT 144
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A7S0J5X7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J5X7_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 1.530e-43
Identity = 65/91 (71.43%), Postives = 81/91 (89.01%), Query Frame = 1 
Query:  109 TLVGLGMYAAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFG 381
            +LV L +Y  GF +MTPQL+INY+L+SVAH+PW+F  Y+ LNTFIDDLFAF+IKMPT+HR+SCFRDD+VF +FLYQRWIY VD++RVNEFG
Sbjct:   26 SLVAL-VYGCGFIVMTPQLFINYRLKSVAHLPWKFFMYKALNTFIDDLFAFIIKMPTLHRMSCFRDDIVFAVFLYQRWIYKVDRSRVNEFG 115
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A6V7LMJ1_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7LMJ1_9HYME)

HSP 1 Score: 151 bits (382), Expect = 2.390e-43
Identity = 66/81 (81.48%), Postives = 75/81 (92.59%), Query Frame = 1 
Query:  139 GFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFG 381
            GF MMTPQL+INYKL+SVAH+PWR M Y+FLNTFIDD+FAFVIKMPT++RL CFRDD+VFFIFLYQRWIY +D TRVNEFG
Sbjct:  142 GFIMMTPQLFINYKLKSVAHLPWRMMSYKFLNTFIDDIFAFVIKMPTLYRLGCFRDDIVFFIFLYQRWIYKIDHTRVNEFG 222
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BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Match: A0A6H5KCZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ3_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 5.140e-43
Identity = 65/91 (71.43%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:  109 TLVGLGMYAAGFAMMTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCFRDDVVFFIFLYQRWIYPVDKTRVNEFG 381
            +LVG  +Y  GF MMTPQL+INYKL+SVAHMPWR M Y+F+NTFIDDLFAF++ MP +HRL+CFRDD++FFIFLYQR++YPVDK R NE+G
Sbjct:   76 SLVGF-VYMFGFVMMTPQLFINYKLKSVAHMPWRVMSYKFINTFIDDLFAFIVPMPIMHRLACFRDDIIFFIFLYQRYLYPVDKARRNEYG 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1778.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5Y2_ECTSI4.860e-5167.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4FEL9_9EUGL2.140e-4575.82Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
V5GGE7_IXORI1.320e-4480.49Putative conserved plasma membrane protein n=1 Tax... [more]
A0A7S0W2U2_9CRYP1.990e-4476.47Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
UPI00077A2BF82.900e-4470.48cleft lip and palate transmembrane protein 1 homol... [more]
A0A6M2E3L3_9ACAR3.660e-4480.49Putative conserved plasma membrane protein n=1 Tax... [more]
A0A023FGA4_AMBCJ1.230e-4380.49Putative conserved plasma membrane protein n=1 Tax... [more]
A0A7S0J5X7_9EUKA1.530e-4371.43Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6V7LMJ1_9HYME2.390e-4381.48Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A6H5KCZ3_9PHAE5.140e-4371.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1778contigP-wetherbeei_contig1778:131..2834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G5Y2
Preferred nameCLPTM1L
PFAMsCLPTM1
Model size384
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0016020,GO:0016021,GO:0031224,GO:0044425
Exons3
Evalue7.96e-52
EggNOG OGsKOG2489@1|root,KOG2489@2759|Eukaryota
Descriptionapoptotic process
Cds size384
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.6104674-CDS-P-wetherbeei_contig1778:130..2581683186126.6104674-CDS-P-wetherbeei_contig1778:130..258Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1778 131..258 +
1683186126.6224415-CDS-P-wetherbeei_contig1778:2243..23941683186126.6224415-CDS-P-wetherbeei_contig1778:2243..2394Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1778 2244..2394 +
1683186126.6325045-CDS-P-wetherbeei_contig1778:2729..28341683186126.6325045-CDS-P-wetherbeei_contig1778:2729..2834Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1778 2730..2834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1778.1.1prot_P-wetherbeei_contig1778.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1778 131..2834 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1778.1.1

>prot_P-wetherbeei_contig1778.1.1 ID=prot_P-wetherbeei_contig1778.1.1|Name=mRNA_P-wetherbeei_contig1778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=128bp
QTVILLDLIQEDASLLVTIPSAVGVAIQAWKLVRSATLVGLGMYAAGFAM
MTPQLWINYKLRSVAHMPWRFMCYRFLNTFIDDLFAFVIKMPTVHRLSCF
RDDVVFFIFLYQRWIYPVDKTRVNEFGT
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mRNA from alignment at P-wetherbeei_contig1778:131..2834+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1778.1.1 ID=mRNA_P-wetherbeei_contig1778.1.1|Name=mRNA_P-wetherbeei_contig1778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2704bp|location=Sequence derived from alignment at P-wetherbeei_contig1778:131..2834+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGTGATTCTTCTCGACCTGATCCAGGAAGACGCGAGCCTGCTCGT
TACTATCCCTTCCGCCGTCGGCGTCGCCATTCAGGCCTGGAAGCTGGTGC
GTTCTGCCACCCTTGTGGGATTGGGGATGTTTTCCTCTTGTATCTGAACC
TCCTGCGGTTCCGTTCCTTAACTTTTTGTGCGCGCTTTGCTCACACGATG
ACGTTGTATCGTCAGAGCGGCGGCCAATGTCATTAAAGCGTTGAATGATT
GCGACCGTCGACAGGCTGCCGAACCTTTTCACGCATCGTAAAGAATCTTC
TCATTGCAAACTCATAGATCGTGTGTGGCATGGGTCTGGAAAACCTCTGG
ATCTATTTCCAGCCGGCGGTGGGAGCGAGGGCGTGTGATGCATCGGATTG
CACGCTGTTGTTAGAACGCCCACAACCTACTCGTTCTCTACTAGTGTACT
CCGGTCTCGCGTTGTTTTCTCGGAATGAGGGCTAGGAGATTGTGAACCGC
GAGGAGCGACCGAGACAGTGGCATGATGGGTTGGAATGTGAAGAACCGCA
AACAATGAATGATGGGTTGAAATGTGAAGAAACGGAAACAAAGCATCCAT
TACATACCGAGCGATGTCGCGGCTGGGGAAACGACCATGGGAAAAGGAAC
CCTTTTCAGATCGCTGTGTAGTGTCGAGACGTGGAACGGGAAGCCATCGC
CAGCTTTTGGGTGTGCGCCGGCGCATGCAGCAGCAGCCCGTGCGAGGCTT
GTGCCCGAAACATCGTCGACGATTTTCTCCGTTCCACGTCTGAACGGTGC
CTGCAGCGCTCCTGTCGGATTCTTTTCAGCGGCCACGGTCGTCTTACCCG
CGCCACAAATGCTGCTCTAGTTGACGCGGAATGTTTAACGGTTCATCTTC
GAGAAAGTTTCGAATTTTGTTCACCGCATTTTGGTCGCTTTAGCTGCCAT
TGGCTATATCGCGACTTCAAGGTCATTCCTTCACCTTAAATGCAGCGCAC
AGGGCGTGTACTGCAAACCGCTAAGCACCCTTAGGACAAATATTCCGGCA
AGCGTCGAGTCCTTTGCCATTAATTGCACCAGTCTCCTCTTCTGCCGTCG
CCTCCGCCGCTGCCTCCTTTCTCTGACTCTTCCTGCTCACCGCTGCTGCT
TCTGCTCACACCCCACTCTTGTCGTTTCTTCGCTGCTGCACATCCGCCCG
CCCGCCGCAGCGCCGCGCTCTGTCAATGATGCGGGGCGTAAGGCTCGCCA
AAGCAACGGCGGCCAGCGGCGACAGCGCCAAGACAGTCGCCAAGAACAGA
GTCTCGGTTTCGCCTCACGGGGCCGCCGCAAGCGCCAATGTTGCTGCCGC
GTGGAGCGCGTCTCCAACGACGGGCAAGGTGCAGAAGCGCAAGAACGCCG
CCGCAAAGGCGGCGGCAGCGGCGGCGGCGGCAGAGAACGGGAACGCGGCT
GGCGCCGCGCCGCCGGCAGACAACGGGTCGGCTGCCGCGCCGGCATCTGT
CTGCCCGTTCGCGTTGCGTCTGCCGGCGGACAAGCTGGTGGGATTAGTCT
CCCCGCACGGCGCATCCGCGGGCGCGGCGGCGGCGGCGACGACCGCTGCA
GCGGAAGTGAAGGGGGCGGGAGGGATAGCCCCTGAGGCGGCAGCGGCGGC
GGCGGATGAGAGCCTGAGTGTGGAGGCGGACCGCACGGCGGTGCTGCACC
TGGGGGCCGTGCTGCTGCCGGCGGTGGTGGGCTACTCGGCGAAGCTGCTC
CTGCTCGGCCGCCACGCCAGCTGGTACGGCTGGGCCGTCTCATCAGCGAC
GGGCTTCGTGTAAGTAGCTTTGGGTTCTCGCTTTCATTACCCTTTTCCGG
CGGCGGATGGCGTTCGGTCAGCTTCCGTTTGCGTTAATTTCCTGGCGGCG
GCGTACTTTAAACCGCTTGCGACACGAGTCATGCTGTCGAAGCAGGACAC
GACCGCATTGAGAAATAAACCGACCCCTACGATTGTTTCGAGCGAACGCG
GTGTCCAATCGGTTTCACAAAATGGTACTAAACCATCTTTAAACTCTTCC
CTGGCGCAAACCAACGGCCGGCCGCGCAACCAAACGAAAACCCAACCCCT
CACTGCGAAACAGGTACGCGGCGGGGTTTGCGATGATGACGCCGCAGTTG
TGGATCAACTACAAGCTGCGGAGCGTGGCGCACATGCCGTGGCGTTTCAT
GTGCTACCGCTTTCTCAACACGTTCATTGACGACCTCTTCGCCTTTGTGA
TCAAGATGCCCACGGTGAGTCTGGGACGAGGAGAGTGAGACAGCTTGCAG
TGGGCGGGACATCCGGCAGTGGCAGCGACTGGTGACATACTTTTGTGTGA
CGGCGGGACAGGACCGAGAGCGAGCAGCGGCGATTGCTACCCCTGGCGAG
TGCACTGGGAGGCGTTGTGTTGTTGAGCCCTGTGTCCTCCAAGGTTTGAA
TCCTTCCCGGTTAGCGGGTCCGTTGCCTACTGCCGGCGCCGGCAAGTTAG
CCTCCTTAAATATCCGCCTCGCCCTCTTTTCTCTCCCTCTTTCCGCCCGT
CTCCGCGCTGGCTTTGCTATCCTCGTTCCTCCGCCACCGCTGCTCTCAGG
TCCACCGGCTGTCATGCTTTCGGGATGACGTGGTCTTCTTCATTTTTCTC
TACCAGCGGTGGATCTACCCCGTTGACAAGACGCGCGTCAATGAGTTCGG
GACC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1778:131..2834+

>mRNA_P-wetherbeei_contig1778.1.1 ID=mRNA_P-wetherbeei_contig1778.1.1|Name=mRNA_P-wetherbeei_contig1778.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=384bp|location=Sequence derived from alignment at P-wetherbeei_contig1778:131..2834+ (Phaeothamnion wetherbeei SAG_119_79)
CAGACGGTGATTCTTCTCGACCTGATCCAGGAAGACGCGAGCCTGCTCGT
TACTATCCCTTCCGCCGTCGGCGTCGCCATTCAGGCCTGGAAGCTGGTGC
GTTCTGCCACCCTTGTGGGATTGGGGATGTACGCGGCGGGGTTTGCGATG
ATGACGCCGCAGTTGTGGATCAACTACAAGCTGCGGAGCGTGGCGCACAT
GCCGTGGCGTTTCATGTGCTACCGCTTTCTCAACACGTTCATTGACGACC
TCTTCGCCTTTGTGATCAAGATGCCCACGGTCCACCGGCTGTCATGCTTT
CGGGATGACGTGGTCTTCTTCATTTTTCTCTACCAGCGGTGGATCTACCC
CGTTGACAAGACGCGCGTCAATGAGTTCGGGACC
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