mRNA_P-wetherbeei_contig17775.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17775.1.1
Unique NamemRNA_P-wetherbeei_contig17775.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: D7G9E2_ECTSI (Possible vitamin K epoxide reductase, plastid protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E2_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 7.900e-22
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 SASMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAVPQRS 333
            S     VL+G Y  V GVPL+    + Y A A LA+ P   +  S A  D++TRS +L VTTAM  FS+YL+SLL  +IG  CPWC TSA LS +MC VAW K+AVP+++
Sbjct:   60 SGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEES-ASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCVVAWMKRAVPEKT 168          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A6H5K243_9PHAE (VKc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K243_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.110e-21
Identity = 55/110 (50.00%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 SASMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAVPQRS 333
            S     VL+G Y  V GVPL+    + Y A A LA+ P   +  S A  D++TRS +L VTTAM  FS+YL+SLL  +IG  CPWC TSA LS +MC VAW K+AVP+++
Sbjct:  149 SGGCLDVLNGPYSNVLGVPLSAFGTLGYLAAAGLAVVPLFAKEES-ASVDKTTRSLLLVVTTAMGVFSLYLLSLLKFKIGYPCPWCLTSAGLSLSMCIVAWTKRAVPEKT 257          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A4D9D107_9STRA (VKc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D107_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 7.430e-21
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   22 VLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALG--QGSSD-AETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAVPQRSVNLVF 348
            VL+  Y    GVPLT+P  +AY  VA LALWP L   +GS + AE D ++R+ +L VTT MATFS YLM +LA ++   CP+C  SA LS++M  + W KQ  P  + +LV+
Sbjct:    6 VLNSEYASFLGVPLTLPGAVAYGTVAALALWPILAGKEGSRERAEADLNSRAPLLTVTTGMATFSAYLMWVLATQVRELCPYCLASASLSFSMAALTWVKQVEPNATKSLVY 117          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: W7TFV8_9STRA (Vitamin K epoxide reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFV8_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 7.360e-20
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:   10 SMR--QVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALG--QGSSD-AETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAVPQRSVNLVF 348
            SMR   VL+  Y    GVPLT+P  +AY  V  LALWP L   +GS + AE D ++R+ +L VTT MATFS YLM +LA ++   CP+C  SA LS++M  + W KQ  P  + +LV+
Sbjct:  137 SMRCGDVLNSEYASFLGVPLTLPGAVAYGTVTALALWPILAGNEGSRERAEADLNSRAPLLTVTTGMATFSAYLMWVLATQVRELCPYCLASASLSFSMAALTWVKQVEPNATKSLVY 254          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A7S2RXM7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RXM7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.540e-17
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   10 SMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAV 321
            S  +VL+G +  VFGVPLTVP + AY+  A+LAL P L     +  T  +T+  ++ VT+AMATFS YLM +L L++G+ CPWCF SA LS  + T  W +  V
Sbjct:  131 SCSEVLNGPWSSVFGVPLTVPGMAAYATAALLALAP-LVVSRGNMPTRIATQKGLIAVTSAMATFSTYLMLVLFLKLGSWCPWCFFSACLSTLLATFTWFRTGV 233          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A0G4EVC6_VITBC (VKc domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EVC6_VITBC)

HSP 1 Score: 82.4 bits (202), Expect = 5.100e-16
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 PSASMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAETDRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAKQAVP 324
            P+     VL G Y  VFG+PLT PA++AY  V  L+L P      S    ++ TR  +L +TTAMATFSVYLMS+L  ++   CP+C+ SA LS T+  ++W    VP
Sbjct:  124 PTGGCYTVLGGPYSTVFGIPLTAPAMLAYGLVTYLSLLPL-----SKPSAEQWTRPMLLALTTAMATFSVYLMSVLVFQLQEFCPYCYLSAGLSLTLFLMSWLWSIVP 226          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A7S2K3D4_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3D4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.280e-10
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:   22 VLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAET-----DRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAW 306
            VLS  Y  + G+PLT     AY+ VA+L++ P L +  +D+ +     D   R  +L ++T MATFS +LMSLL L +   CP+C  SA+LS  + TV W
Sbjct:  122 VLSSPYANIAGIPLTAFGFAAYTTVAILSILPLLNKEENDSSSTAGGDDSFNRLALLTISTGMATFSAFLMSLLLLVLKEMCPYCILSAVLSLGLGTVTW 221          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A6M0C4Z5_9CYAN (Vitamin K epoxide reductase family protein n=1 Tax=Okeania sp. SIO2H7 TaxID=2607802 RepID=A0A6M0C4Z5_9CYAN)

HSP 1 Score: 66.2 bits (160), Expect = 1.890e-10
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 PSASMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQ--GSSDAETDRSTRSWIL--GVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTM 291
            P+   ++VL   Y  VFGVPLT+   IAY++V V+A  P L Q   +    +    +SW+L   +TT M   S YLMS++A +I A CP+C  SA+LS ++
Sbjct:   46 PTQGCKEVLESPYAMVFGVPLTLFGFIAYTSVTVIAFTPILLQLKNNKSLRSQLEDKSWLLLLVITTTMVVSSGYLMSIMAWKIEAFCPYCIISAILSLSL 146          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: UPI001A057900 (Vitamin K epoxide reductase family protein n=1 Tax=Synechococcales cyanobacterium T60_A2020_003 TaxID=2774349 RepID=UPI001A057900)

HSP 1 Score: 65.5 bits (158), Expect = 3.470e-10
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 PSASMRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPAL--GQGSSDAETDRSTRSWILGV--TTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTM 291
            P+ S  QVLS  Y +VFG+PLT+   + Y+++ ++A+ P L   +   D      T +W+L     TAMATFS YLM +LA ++ A CP+C  SA  S +M
Sbjct:   46 PTKSCDQVLSSPYAEVFGLPLTLFGFLGYASMGIMAIAPLLINPETQKDLRYKVETWTWLLLFLGATAMATFSGYLMYVLAFKLQAACPYCIASATFSLSM 146          
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Match: A0A836CDR7_9STRA (VKc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDR7_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 9.670e-10
Identity = 41/80 (51.25%), Postives = 48/80 (60.00%), Query Frame = 1
Query:   82 AYSAVAVLALWPAL------GQGSSDAET---------DRSTRSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSAL 276
            AY AVA LAL P L       +  +DA+          D  TRSW+L +TTAMATFS YLM +LA RIGA CP+CF S L
Sbjct:    3 AYGAVAALALVPLLLSSRAAREAGADAQALAMQRAAGVDGWTRSWLLVITTAMATFSAYLMGVLAFRIGAFCPYCFLSLL 82          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17775.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G9E2_ECTSI7.900e-2250.00Possible vitamin K epoxide reductase, plastid prot... [more]
A0A6H5K243_9PHAE2.110e-2150.00VKc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9D107_9STRA7.430e-2147.32VKc domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TFV8_9STRA7.360e-2046.61Vitamin K epoxide reductase n=1 Tax=Nannochloropsi... [more]
A0A7S2RXM7_9STRA1.540e-1747.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EVC6_VITBC5.100e-1644.44VKc domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A7S2K3D4_9STRA1.280e-1041.00Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A6M0C4Z5_9CYAN1.890e-1040.59Vitamin K epoxide reductase family protein n=1 Tax... [more]
UPI001A0579003.470e-1040.59Vitamin K epoxide reductase family protein n=1 Tax... [more]
A0A836CDR7_9STRA9.670e-1051.25VKc domain-containing protein n=1 Tax=Tribonema mi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17775contigP-wetherbeei_contig17775:648..1375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G9E2
PFAMsVKOR
Model size348
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0003955,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010207,GO:0015979,GO:0016043,GO:0016491,GO:0016651,GO:0016655,GO:0019684,GO:0022607,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0065003,GO:0071840
Exons2
Evalue3.05e-22
EggNOG OGsCOG4243@1|root,2QRER@2759|Eukaryota
DescriptionVitamin K epoxide reductase family
Cds size336
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.502926-CDS-P-wetherbeei_contig17775:647..8181683186126.502926-CDS-P-wetherbeei_contig17775:647..818Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17775 648..818 -
1683186126.5122828-CDS-P-wetherbeei_contig17775:1198..13631683186126.5122828-CDS-P-wetherbeei_contig17775:1198..1363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17775 1199..1363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186126.5204864-UTR-P-wetherbeei_contig17775:1363..13751683186126.5204864-UTR-P-wetherbeei_contig17775:1363..1375Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17775 1364..1375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17775.1.1prot_P-wetherbeei_contig17775.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17775 648..1363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17775.1.1

>prot_P-wetherbeei_contig17775.1.1 ID=prot_P-wetherbeei_contig17775.1.1|Name=mRNA_P-wetherbeei_contig17775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
MRQVLSGLYLQVFGVPLTVPAVIAYSAVAVLALWPALGQGSSDAETDRST
RSWILGVTTAMATFSVYLMSLLALRIGAGCPWCFTSALLSWTMCTVAWAK
QAVPQRSVNLVF
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mRNA from alignment at P-wetherbeei_contig17775:648..1375-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17775.1.1 ID=mRNA_P-wetherbeei_contig17775.1.1|Name=mRNA_P-wetherbeei_contig17775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=728bp|location=Sequence derived from alignment at P-wetherbeei_contig17775:648..1375- (Phaeothamnion wetherbeei SAG_119_79)
CCATCCGCTTCGATGCGGCAGGTTTTGTCGGGATTGTATTTGCAAGTCTT CGGCGTCCCATTGACCGTGCCGGCAGTGATTGCTTACTCGGCCGTGGCGG TTTTGGCGCTCTGGCCGGCGCTCGGGCAGGGCTCTTCAGACGCTGAAACG GACCGTTCCACGCGCTCGTGGATTCTGGTGCGCTCAGCCGTGCAAAATGT TTTCTATCGGTTTTGGTGTCAGGCGGCATTCTGGCGTATCTTGTATTGTG CCAGCGTGGTGAACATTCTTTAGTCTTAATTGCGCTTTATGTTTGAATAT CTCTTTTTCTCGCTTTCTTTGGTCATGCCGACTCAGTCTTCCCACTGCGC GTGGTTTTGGGCATTTGACCACTGAACGCACTCAACTCGTGCAGCGTTAT CAATGCGAACCCGCAATGCGGGTTTTCAAGCCGCGTGCTTCAAATCCCGC CACTGCGCGTACTTTCCGTAGGATTGCCATTGACCTGTGTTTCTTCCTCT CCGATCTTCCTCTTCGGTGCCACTGTGCTGCCGACTCCGACTGGTGGACT GGCACAGGGTGTGACGACGGCGATGGCGACCTTTTCCGTGTACTTGATGA GCTTGCTGGCGCTGCGGATCGGTGCCGGCTGCCCGTGGTGCTTTACATCG GCGCTTCTGTCATGGACCATGTGCACCGTCGCCTGGGCCAAGCAGGCCGT GCCCCAAAGGTCAGTCAACTTGGTCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17775:648..1375-

>mRNA_P-wetherbeei_contig17775.1.1 ID=mRNA_P-wetherbeei_contig17775.1.1|Name=mRNA_P-wetherbeei_contig17775.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig17775:648..1375- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGCAGGTTTTGTCGGGATTGTATTTGCAAGTCTTCGGCGTCCCATT
GACCGTGCCGGCAGTGATTGCTTACTCGGCCGTGGCGGTTTTGGCGCTCT
GGCCGGCGCTCGGGCAGGGCTCTTCAGACGCTGAAACGGACCGTTCCACG
CGCTCGTGGATTCTGGGTGTGACGACGGCGATGGCGACCTTTTCCGTGTA
CTTGATGAGCTTGCTGGCGCTGCGGATCGGTGCCGGCTGCCCGTGGTGCT
TTACATCGGCGCTTCTGTCATGGACCATGTGCACCGTCGCCTGGGCCAAG
CAGGCCGTGCCCCAAAGGTCAGTCAACTTGGTCTTT
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