mRNA_P-wetherbeei_contig17753.2.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17753.2.4
Unique NamemRNA_P-wetherbeei_contig17753.2.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A835YMP4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP4_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.500e-20
Identity = 46/72 (63.89%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  229 QVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIG-DAGLEFIAELLRELN 441
            +VK RRNVLLLGDSLGDL MA+GL++  +L++GFLND+  ER+  YLA YDVVIIG DAGL++  +L+REL 
Sbjct:  200 EVKLRRNVLLLGDSLGDLQMASGLEADEVLSVGFLNDQAEERIGSYLAGYDVVIIGPDAGLQYALDLVRELK 271          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.030e-17
Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  229 QVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLREL 438
            +++ R NVLLLGDSLGDL+MA GL +   LT+GFLND+V ER + YL  YDVVI+GD   +F+ ELL ++
Sbjct:  228 EMRCRSNVLLLGDSLGDLNMAKGLRAEETLTVGFLNDKVEERADAYLKAYDVVILGDGSFDFVLELLEQV 297          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A7Y7QKD1_9BACT (5'-nucleotidase n=1 Tax=Candidatus Gracilibacteria bacterium TaxID=2044595 RepID=A0A7Y7QKD1_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 2.190e-15
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 1
Query:  229 QVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELL 429
            ++K R+NV+LLGDSLGD  M AG D   LL IGFLND + E L +Y   YDVVI+GD   EFI E+L
Sbjct:  212 EIKSRKNVILLGDSLGDPGMIAGFDYDNLLKIGFLNDNIDELLEEYKKNYDVVIVGDGDFEFINEIL 278          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A2D6U111_9ARCH (5'-nucleotidase n=1 Tax=Candidatus Pacearchaeota archaeon TaxID=2026773 RepID=A0A2D6U111_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 6.580e-15
Identity = 36/72 (50.00%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  226 WQVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLRELN 441
            W++  +RNVLLLGD++GD+ M  G +   L+ +GFLN+ V E L +Y   YDVVIIGD   EF+  LL E+N
Sbjct:  213 WELVDKRNVLLLGDNVGDVKMVEGFEYDNLIKVGFLNENVEENLEEYKKNYDVVIIGDGDFEFVNGLLGEMN 284          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A0G0R1X4_9BACT (5'-nucleotidase n=1 Tax=Candidatus Moranbacteria bacterium GW2011_GWC2_40_12 TaxID=1618699 RepID=A0A0G0R1X4_9BACT)

HSP 1 Score: 77.8 bits (190), Expect = 2.450e-14
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  229 QVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLREL 438
            ++K+R+NVLLLGD  GD  M+ G D+  +L IGFLN++  E L  Y  +YDVV++ D   ++I ELL+E+
Sbjct:  217 EIKKRKNVLLLGDGTGDAGMSDGFDAENVLKIGFLNEKAEENLKHYTKLYDVVLLNDPPFDYIVELLKEI 286          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A3R7A1J4_9STRA (5'-nucleotidase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A1J4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.810e-14
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:  241 RRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLREL 438
            RRNV+LLGDS+GD++M  GLD + +L IGFLN  + ER+ +YL +YDVVI+ D  L F A L+ +L
Sbjct:   60 RRNVVLLGDSVGDVNMTQGLDGKEVLRIGFLNAHIEERMAEYLTLYDVVIVNDGTLHF-AHLVVDL 124          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A0D2U9Z3_CAPO3 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Z3_CAPO3)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  232 VKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELL 429
            +  R NV+LLGDSLGDL M+ G+D   +LTIGFLND+V ERL  Y   +DVVI+GD  ++ +  L+
Sbjct:  314 IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLI 379          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: UPI0001FE3700 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3700)

HSP 1 Score: 77.0 bits (188), Expect = 1.130e-13
Identity = 35/66 (53.03%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  232 VKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELL 429
            +  R NV+LLGDSLGDL M+ G+D   +LTIGFLND+V ERL  Y   +DVVI+GD  ++ +  L+
Sbjct:  351 IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLI 416          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A3R6YYY0_9STRA (5'-nucleotidase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YYY0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.550e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1
Query:  241 RRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEF 414
            RRNV+LLGDS+GD++M  GLD + +L IGFLN  + ER+ +YL++YDVVI+ D  L F
Sbjct:  124 RRNVVLLGDSIGDVNMTEGLDGKEVLRIGFLNTHIEERMAEYLSLYDVVIVNDGTLHF 181          
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Match: A0A2G9M4Z1_9ARCH (5'-nucleotidase n=1 Tax=Candidatus Woesearchaeota archaeon CG10_big_fil_rev_8_21_14_0_10_45_16 TaxID=1974465 RepID=A0A2G9M4Z1_9ARCH)

HSP 1 Score: 75.5 bits (184), Expect = 1.630e-13
Identity = 34/70 (48.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  229 QVKRRRNVLLLGDSLGDLSMAAGLDSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLREL 438
            QVK RR+V+LLGDSLGDL M+ GL+   ++ IGFLN+   + L +YL ++DVVI  D+G+E++ ++L ++
Sbjct:  209 QVKDRRHVILLGDSLGDLGMSEGLEHDVIIKIGFLNENKEKFLKKYLNMFDVVITDDSGMEYVDDILTQV 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17753.2.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YMP4_9STRA4.500e-2063.895'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A6H5JI70_9PHAE2.030e-1757.145'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A7Y7QKD1_9BACT2.190e-1558.215'-nucleotidase n=1 Tax=Candidatus Gracilibacteria... [more]
A0A2D6U111_9ARCH6.580e-1550.005'-nucleotidase n=1 Tax=Candidatus Pacearchaeota a... [more]
A0A0G0R1X4_9BACT2.450e-1447.145'-nucleotidase n=1 Tax=Candidatus Moranbacteria b... [more]
A0A3R7A1J4_9STRA6.810e-1454.555'-nucleotidase n=1 Tax=Aphanomyces astaci TaxID=1... [more]
A0A0D2U9Z3_CAPO31.020e-1353.035'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
UPI0001FE37001.130e-1353.035'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
A0A3R6YYY0_9STRA1.550e-1356.905'-nucleotidase n=1 Tax=Aphanomyces invadans TaxID... [more]
A0A2G9M4Z1_9ARCH1.630e-1348.575'-nucleotidase n=1 Tax=Candidatus Woesearchaeota ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17753contigP-wetherbeei_contig17753:500..1346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LDF4
PFAMsUMPH-1
Model size445
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
Hectar predicted targeting categorymitochondrion
Exons3
Evalue1.96e-19
EggNOG OGsKOG3128@1|root,KOG3128@2759|Eukaryota
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.2
EC3.1.3.5
DescriptionBelongs to the pyrimidine 5'-nucleotidase family
Cds size444
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.927739-CDS-P-wetherbeei_contig17753:499..7581683186125.927739-CDS-P-wetherbeei_contig17753:499..758Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17753 500..758 -
1683186125.9399576-CDS-P-wetherbeei_contig17753:991..10361683186125.9399576-CDS-P-wetherbeei_contig17753:991..1036Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17753 992..1036 -
1683186125.9500513-CDS-P-wetherbeei_contig17753:1206..13461683186125.9500513-CDS-P-wetherbeei_contig17753:1206..1346Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17753 1207..1346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17753.2.4prot_P-wetherbeei_contig17753.2.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17753 500..1346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17753.2.4

>prot_P-wetherbeei_contig17753.2.4 ID=prot_P-wetherbeei_contig17753.2.4|Name=mRNA_P-wetherbeei_contig17753.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
TCWRRCSGSAARRRRRIRRTSSPTAWPSGPTAFSRASPASSSTSSTRTRR
RSRRSPTFAARSRPKTSPPTSGDRLWQVKRRRNVLLLGDSLGDLSMAAGL
DSRTLLTIGFLNDRVPERLNQYLAVYDVVIIGDAGLEFIAELLRELN*
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mRNA from alignment at P-wetherbeei_contig17753:500..1346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17753.2.4 ID=mRNA_P-wetherbeei_contig17753.2.4|Name=mRNA_P-wetherbeei_contig17753.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=847bp|location=Sequence derived from alignment at P-wetherbeei_contig17753:500..1346- (Phaeothamnion wetherbeei SAG_119_79)
ACGTGCTGGAGGAGGTGCTCCGGCAGCGCAGCGAGGCGCCGCCGCCGGAT ACGACGCACGTCATCTCCAACCGCATGGCCTTCGGGCCCGACGGCTTTCT CTCGGGCTTCTCCGGCCAGCTCTTCCACGTCTTCAACAAGGTGAAACCGT CGGGCGGTTTCTTGCCATTTTGGGGGCCGTCAAGGGTTCTTTCGTTTTTG TAAGGGCAGTATCGAGTTTTGCTGTCTTTAGCTTTTCCTTTGTAAGCGGC TTCGATCGAACCAAGTAAATTGTTGCACACCCGGTCTCGTTGTGCATCTA ATGCGTGCAGAACGCGGCGTCGGTCCAGGAGGAGCCCTACTTTCGCAGCG AGGAGGTGAGAAAGTGGGCAGGCGGGCCGGCAGCATTCTGCTGACGCCTT CTCCCGCCTGGCTACACCAACACTGCACTTGTGTTTGAAGATATAGTCCT CCCCCAACAAGAAGAGCATTTGGAAAGTTGGGGCGGTACGCCCTTTGCTC CCGCGCGTTTACTTGTCAGCCACAGCATTCTGGTCAATTATCTTAGAGCT CCTGTCTCCTCCGGCTCCCGGTCTCATATTTTCTGCAGTCGTCCCAAAAC CAGCCCACCAACCAGCGGCGACCGGCTTTGGCAGGTGAAGCGGCGGCGCA ACGTGCTGCTGCTGGGGGACAGCCTCGGCGACCTCAGCATGGCGGCGGGC CTCGACTCCCGCACCCTCCTCACGATCGGCTTTCTCAACGATCGCGTGCC CGAGCGGCTAAACCAGTATTTGGCTGTGTACGACGTTGTGATTATCGGGG ACGCCGGGCTCGAGTTCATCGCGGAGCTGCTCCGGGAGTTGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17753:500..1346-

>mRNA_P-wetherbeei_contig17753.2.4 ID=mRNA_P-wetherbeei_contig17753.2.4|Name=mRNA_P-wetherbeei_contig17753.2.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig17753:500..1346- (Phaeothamnion wetherbeei SAG_119_79)
ACGTGCTGGAGGAGGTGCTCCGGCAGCGCAGCGAGGCGCCGCCGCCGGAT
ACGACGCACGTCATCTCCAACCGCATGGCCTTCGGGCCCGACGGCTTTCT
CTCGGGCTTCTCCGGCCAGCTCTTCCACGTCTTCAACAAGAACGCGGCGT
CGGTCCAGGAGGAGCCCTACTTTCGCAGCGAGGAGTCGTCCCAAAACCAG
CCCACCAACCAGCGGCGACCGGCTTTGGCAGGTGAAGCGGCGGCGCAACG
TGCTGCTGCTGGGGGACAGCCTCGGCGACCTCAGCATGGCGGCGGGCCTC
GACTCCCGCACCCTCCTCACGATCGGCTTTCTCAACGATCGCGTGCCCGA
GCGGCTAAACCAGTATTTGGCTGTGTACGACGTTGTGATTATCGGGGACG
CCGGGCTCGAGTTCATCGCGGAGCTGCTCCGGGAGTTGAACTGA
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