mRNA_P-wetherbeei_contig17751.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17751.1.1
Unique NamemRNA_P-wetherbeei_contig17751.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17751.1.1 vs. uniprot
Match: A0A2P8FRI7_9BACT (Uncharacterized protein n=1 Tax=Dyadobacter jiangsuensis TaxID=1591085 RepID=A0A2P8FRI7_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 6.530e-10
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 FPMESLEKTIQTWIVYIFRDTTCYVNRGDSCENLLL 114
            F   SLEK I+TWIVYIFRDT CYVNRGD  + LL+
Sbjct:   10 FQRGSLEKLIRTWIVYIFRDTICYVNRGDKYKKLLI 45
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17751.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2P8FRI7_9BACT6.530e-1069.44Uncharacterized protein n=1 Tax=Dyadobacter jiangs... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17751contigP-wetherbeei_contig17751:121..237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size117
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.8413942-CDS-P-wetherbeei_contig17751:120..2371683186125.8413942-CDS-P-wetherbeei_contig17751:120..237Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17751 121..237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17751.1.1prot_P-wetherbeei_contig17751.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17751 121..237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17751.1.1

>prot_P-wetherbeei_contig17751.1.1 ID=prot_P-wetherbeei_contig17751.1.1|Name=mRNA_P-wetherbeei_contig17751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
MDFPMESLEKTIQTWIVYIFRDTTCYVNRGDSCENLLL*
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mRNA from alignment at P-wetherbeei_contig17751:121..237-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17751.1.1 ID=mRNA_P-wetherbeei_contig17751.1.1|Name=mRNA_P-wetherbeei_contig17751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig17751:121..237- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTTCCAATGGAATCCTTGGAAAAGACAATACAGACTTGGATTGT
CTACATTTTCCGAGACACCACCTGCTATGTAAACCGTGGCGACAGCTGTG
AGAATTTATTGCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17751:121..237-

>mRNA_P-wetherbeei_contig17751.1.1 ID=mRNA_P-wetherbeei_contig17751.1.1|Name=mRNA_P-wetherbeei_contig17751.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig17751:121..237- (Phaeothamnion wetherbeei SAG_119_79)
ATGGATTTTCCAATGGAATCCTTGGAAAAGACAATACAGACTTGGATTGT
CTACATTTTCCGAGACACCACCTGCTATGTAAACCGTGGCGACAGCTGTG
AGAATTTATTGCTGTGA
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