mRNA_P-wetherbeei_contig1775.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1775.2.1
Unique NamemRNA_P-wetherbeei_contig1775.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1775.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1775contigP-wetherbeei_contig1775:569..2812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2244
Hectar predicted targeting categoryother localisation
Exons1
Cds size1731
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.7393386-UTR-P-wetherbeei_contig1775:568..9851683186125.7393386-UTR-P-wetherbeei_contig1775:568..985Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1775 569..985 -
1683186125.7582743-UTR-P-wetherbeei_contig1775:2716..28121683186125.7582743-UTR-P-wetherbeei_contig1775:2716..2812Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1775 2717..2812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.7498984-CDS-P-wetherbeei_contig1775:985..27161683186125.7498984-CDS-P-wetherbeei_contig1775:985..2716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1775 986..2716 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1775.2.1prot_P-wetherbeei_contig1775.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1775 986..2716 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1775.2.1

>prot_P-wetherbeei_contig1775.2.1 ID=prot_P-wetherbeei_contig1775.2.1|Name=mRNA_P-wetherbeei_contig1775.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=577bp
MPAAPPPAAAAASGSGGGSSGAAAADGGSGGQRSAPMCVSEEDDDDVFSK
LPMAACLPNSSRTRIANSDGGDGSGAIAACGAKRHRVVDSDDDDEAFGGN
GNSASTGGGAGVAVPILDLADQAEAGGLRAAAAENSEAADIPAETAAETA
EVAAVATAAAAAAIVADTLAAPAVEPPQLADVPVITDVPLPRPRLDEAAA
ARQRQLAALLATISAHADAFSAADEVNGGGRVGLIADGGDHFFTTPAPAA
PRWDVQVDPAALELLPGTTFGWTAGAHAEEAVRRLGTLVFQRALAARLEE
WAPFLPQQEPLAGEEGAAGGGGGGSGGSGGGTSAVAICDGDKASLGVAVD
LTTFGEGGAGGASTGSGDGMNSDSSVGRRQAAAGQSFRTVVVMSDSEEDL
SYSADEATVPSAAASAAVIAACATADGTGSGSGGGNGSSSSNGGSSSGSG
GGGGTAGWAAVAGNVLSRQVACLRGHCLSYCQADRLDYVISAARRLNFSR
GRGADFKGTHRADPRDVAELMPLLVRLCAGETACAAAEPSWRRRRGGLTR
HLVQVGAVDRAEDVAAIAGAYHHGAW*
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mRNA from alignment at P-wetherbeei_contig1775:569..2812-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1775.2.1 ID=mRNA_P-wetherbeei_contig1775.2.1|Name=mRNA_P-wetherbeei_contig1775.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2244bp|location=Sequence derived from alignment at P-wetherbeei_contig1775:569..2812- (Phaeothamnion wetherbeei SAG_119_79)
CGCGAAGGCAACAGTCGCCGCGGCGGCGCCGACCGCACCGGCAGCGCGGG
CGGCGGCAGCACGGCGGCGGTGACAAGCGAGGAGGAAGACAGCAGCATGC
CAGCAGCGCCGCCGCCGGCCGCCGCCGCCGCTTCTGGCAGTGGCGGCGGC
AGCAGCGGAGCGGCCGCTGCCGATGGCGGCTCTGGCGGCCAGCGCAGTGC
GCCGATGTGCGTGAGCGAGGAGGACGATGACGATGTCTTCTCGAAGCTCC
CCATGGCCGCATGCCTCCCCAACAGCAGCCGGACCAGGATCGCCAACAGC
GACGGCGGGGACGGCAGCGGCGCTATCGCCGCTTGCGGTGCCAAGCGGCA
TCGCGTCGTCGATTCCGACGACGACGATGAGGCATTTGGCGGTAACGGCA
ACAGCGCCAGCACTGGCGGCGGCGCCGGTGTCGCTGTTCCCATTCTGGAT
CTGGCTGACCAGGCCGAAGCCGGGGGTTTGAGGGCGGCGGCAGCAGAGAA
TAGTGAAGCGGCCGACATACCGGCGGAGACGGCGGCTGAGACGGCGGAAG
TGGCAGCAGTGGCGACGGCGGCGGCAGCGGCTGCCATAGTGGCCGACACT
CTGGCGGCGCCAGCCGTGGAACCGCCGCAGCTGGCGGACGTGCCGGTGAT
AACAGACGTTCCGCTTCCGCGGCCGCGGCTGGATGAGGCGGCGGCGGCGC
GGCAGCGGCAGCTGGCGGCGCTGTTGGCGACCATCAGCGCCCACGCAGAC
GCCTTTTCGGCGGCGGACGAGGTGAATGGCGGCGGACGCGTCGGGCTCAT
TGCGGACGGCGGCGATCACTTCTTCACGACACCGGCGCCGGCGGCGCCGC
GTTGGGATGTGCAGGTGGACCCGGCGGCGCTTGAACTGCTTCCTGGGACA
ACTTTCGGCTGGACGGCGGGGGCGCACGCGGAGGAGGCGGTGCGGCGCCT
CGGAACACTCGTCTTCCAGCGCGCGCTGGCGGCCCGCCTGGAGGAGTGGG
CGCCATTCTTGCCACAGCAGGAGCCCCTTGCTGGGGAGGAAGGTGCTGCA
GGTGGTGGCGGCGGCGGCAGCGGCGGCAGCGGCGGCGGTACATCTGCTGT
CGCTATTTGCGACGGCGACAAGGCCAGCCTTGGAGTTGCCGTAGACCTGA
CAACCTTTGGCGAAGGCGGGGCTGGCGGTGCTTCCACCGGGAGCGGTGAC
GGCATGAACAGCGACAGCAGCGTCGGCCGCCGGCAGGCTGCCGCCGGGCA
GAGCTTTAGAACCGTCGTGGTAATGTCGGACAGCGAGGAAGATCTGAGCT
ATAGCGCCGACGAGGCGACTGTACCTTCTGCTGCAGCCTCGGCCGCCGTC
ATCGCCGCATGCGCCACCGCTGATGGCACCGGCAGCGGAAGCGGCGGTGG
CAATGGCAGCAGCAGTAGCAATGGCGGCAGCAGCAGCGGCAGCGGCGGCG
GCGGCGGCACCGCCGGCTGGGCAGCAGTCGCCGGCAATGTGCTGTCACGG
CAGGTGGCATGCCTGCGCGGGCACTGCCTGAGTTACTGCCAGGCAGACCG
CCTAGACTATGTCATATCAGCGGCGCGGCGGCTCAACTTCTCGCGCGGCC
GCGGCGCTGACTTCAAGGGCACCCACCGTGCCGACCCGCGCGATGTGGCG
GAGCTGATGCCACTGCTGGTGCGGTTGTGCGCCGGCGAGACCGCTTGCGC
TGCGGCCGAGCCGTCGTGGCGGCGGCGGCGAGGCGGACTGACGCGCCACC
TGGTGCAAGTCGGAGCGGTGGACCGGGCGGAAGACGTGGCTGCGATCGCT
GGTGCCTACCACCACGGCGCCTGGTGAGCAATTGGGATCCCAGAGCCAGC
CTATAGTGGATGCAGTCTCCGGCGCCGTTGGTTCGATGTTTGGGGGCGGG
TAGGCAGCTAAGTCGGGTCGAGAACGAGAGCGCGGCGTCGACGTGGACGA
GTTCAGGTGCTGGGATGAGGCAGCGACGGGGAACACACAAGCGACAGCCC
CGGCTGCGGCAGTGGCATCCGGCTGCGAAAGCTACGAAGCATGCTCAGAG
GCGGCGTGCGATGTACACCTGGCTGCCACTTGTCCGGCGTATATCCGCTG
CGCTTAGGGCATGTGTGAGAAAGACGGATGGCTACATTTTCATTTGGGTA
TCGTAGTAAGTTTTGGTGGGCCCACGCTGCGTCCCGTCCTCAAGCCCCTA
AACATAGAGCGAGTGCAATGAGAATGGGATGAGTACTATTATAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1775:569..2812-

>mRNA_P-wetherbeei_contig1775.2.1 ID=mRNA_P-wetherbeei_contig1775.2.1|Name=mRNA_P-wetherbeei_contig1775.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1731bp|location=Sequence derived from alignment at P-wetherbeei_contig1775:569..2812- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCAGCAGCGCCGCCGCCGGCCGCCGCCGCCGCTTCTGGCAGTGGCGG
CGGCAGCAGCGGAGCGGCCGCTGCCGATGGCGGCTCTGGCGGCCAGCGCA
GTGCGCCGATGTGCGTGAGCGAGGAGGACGATGACGATGTCTTCTCGAAG
CTCCCCATGGCCGCATGCCTCCCCAACAGCAGCCGGACCAGGATCGCCAA
CAGCGACGGCGGGGACGGCAGCGGCGCTATCGCCGCTTGCGGTGCCAAGC
GGCATCGCGTCGTCGATTCCGACGACGACGATGAGGCATTTGGCGGTAAC
GGCAACAGCGCCAGCACTGGCGGCGGCGCCGGTGTCGCTGTTCCCATTCT
GGATCTGGCTGACCAGGCCGAAGCCGGGGGTTTGAGGGCGGCGGCAGCAG
AGAATAGTGAAGCGGCCGACATACCGGCGGAGACGGCGGCTGAGACGGCG
GAAGTGGCAGCAGTGGCGACGGCGGCGGCAGCGGCTGCCATAGTGGCCGA
CACTCTGGCGGCGCCAGCCGTGGAACCGCCGCAGCTGGCGGACGTGCCGG
TGATAACAGACGTTCCGCTTCCGCGGCCGCGGCTGGATGAGGCGGCGGCG
GCGCGGCAGCGGCAGCTGGCGGCGCTGTTGGCGACCATCAGCGCCCACGC
AGACGCCTTTTCGGCGGCGGACGAGGTGAATGGCGGCGGACGCGTCGGGC
TCATTGCGGACGGCGGCGATCACTTCTTCACGACACCGGCGCCGGCGGCG
CCGCGTTGGGATGTGCAGGTGGACCCGGCGGCGCTTGAACTGCTTCCTGG
GACAACTTTCGGCTGGACGGCGGGGGCGCACGCGGAGGAGGCGGTGCGGC
GCCTCGGAACACTCGTCTTCCAGCGCGCGCTGGCGGCCCGCCTGGAGGAG
TGGGCGCCATTCTTGCCACAGCAGGAGCCCCTTGCTGGGGAGGAAGGTGC
TGCAGGTGGTGGCGGCGGCGGCAGCGGCGGCAGCGGCGGCGGTACATCTG
CTGTCGCTATTTGCGACGGCGACAAGGCCAGCCTTGGAGTTGCCGTAGAC
CTGACAACCTTTGGCGAAGGCGGGGCTGGCGGTGCTTCCACCGGGAGCGG
TGACGGCATGAACAGCGACAGCAGCGTCGGCCGCCGGCAGGCTGCCGCCG
GGCAGAGCTTTAGAACCGTCGTGGTAATGTCGGACAGCGAGGAAGATCTG
AGCTATAGCGCCGACGAGGCGACTGTACCTTCTGCTGCAGCCTCGGCCGC
CGTCATCGCCGCATGCGCCACCGCTGATGGCACCGGCAGCGGAAGCGGCG
GTGGCAATGGCAGCAGCAGTAGCAATGGCGGCAGCAGCAGCGGCAGCGGC
GGCGGCGGCGGCACCGCCGGCTGGGCAGCAGTCGCCGGCAATGTGCTGTC
ACGGCAGGTGGCATGCCTGCGCGGGCACTGCCTGAGTTACTGCCAGGCAG
ACCGCCTAGACTATGTCATATCAGCGGCGCGGCGGCTCAACTTCTCGCGC
GGCCGCGGCGCTGACTTCAAGGGCACCCACCGTGCCGACCCGCGCGATGT
GGCGGAGCTGATGCCACTGCTGGTGCGGTTGTGCGCCGGCGAGACCGCTT
GCGCTGCGGCCGAGCCGTCGTGGCGGCGGCGGCGAGGCGGACTGACGCGC
CACCTGGTGCAAGTCGGAGCGGTGGACCGGGCGGAAGACGTGGCTGCGAT
CGCTGGTGCCTACCACCACGGCGCCTGGTGA
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