mRNA_P-wetherbeei_contig17743.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-wetherbeei_contig17743.1.1
Unique Name	mRNA_P-wetherbeei_contig17743.1.1
Type	mRNA
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)

Homology

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A5D6XNB2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XNB2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.170e-29
Identity = 67/111 (60.36%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+A  AELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NKFELLRE+KND+++  EDKL+ +EE+H    QE E  +Q R+M EVERY
Sbjct:  756 EEILVTKSDLEEKNALMAELKNKVDELMLHNEYQLRLKDMTYNESLKDLTEKFTHEIELEKNKFELLREDKNDLEMAFEDKLKALEERHLQRLQEAEAAFQHRIMTEVERY 866

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A6A3SQT7_9STRA (Cilia-and flagella-associated protein 57 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3SQT7_9STRA)

HSP 1 Score: 119 bits (299), Expect = 2.590e-29
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ++M EVERY
Sbjct:    6 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEAAYQQKIMKEVERY 116

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A3F2RUX9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUX9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.980e-29
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ++M EVERY
Sbjct:  983 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEASYQQKIMKEVERY 1093

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A6G0QJM9_9STRA (Cilia-and flagella-associated protein 57 n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QJM9_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.940e-29
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ++M EVERY
Sbjct:  262 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEAAYQQKIMKEVERY 372

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: G5AB45_PHYSP (Uncharacterized protein n=23 Tax=Phytophthora TaxID=4783 RepID=G5AB45_PHYSP)

HSP 1 Score: 119 bits (299), Expect = 4.040e-29
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ++M EVERY
Sbjct:  731 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEATYQQKIMKEVERY 841

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: H3GPP5_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GPP5_PHYRM)

HSP 1 Score: 119 bits (299), Expect = 4.050e-29
Identity = 64/111 (57.66%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ++M EVERY
Sbjct:  782 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEAAYQQKIMKEVERY 892

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A6A3I5X4_9STRA (Cilia-and flagella-associated protein 57 n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3I5X4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.590e-28
Identity = 64/111 (57.66%), Postives = 88/111 (79.28%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  YQQ+ M EVERY
Sbjct:  566 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEAAYQQKNMKEVERY 676

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: D0N9R4_PHYIT (WD domain-containing protein, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N9R4_PHYIT)

HSP 1 Score: 116 bits (291), Expect = 4.850e-28
Identity = 62/111 (55.86%), Postives = 89/111 (80.18%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQHQHLQQEREREYQQRVMAEVERY 334
            EE+LVT++DL+EK+    ELKNK DEL LHNEYQLRLKDM Y+E +K+++EK T ++E  +NK+ELLRE+KND+++E E+K++++EE H    QE E  +QQ++M EVE+Y
Sbjct:  707 EEILVTKSDLEEKNTLMLELKNKVDELMLHNEYQLRLKDMTYNENLKDLTEKFTHEIELEKNKYELLREDKNDIEMEYEEKIKQLEEHHLQQMQETEAAFQQKIMKEVEQY 817

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A2R5GZ13_9STRA (Cilia-and flagella-associated protein 57 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ13_9STRA)

HSP 1 Score: 116 bits (291), Expect = 4.860e-28
Identity = 59/89 (66.29%), Postives = 80/89 (89.89%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQH 268
            EE+LVT+ DL+EK+A  AELK+K DEL LHNEYQLRLKDMNY+EKIKE++EK TQ+LEQ +N++ELLREEKND+++E  DK++++++QH
Sbjct:  767 EEILVTKTDLEEKNALMAELKSKVDELTLHNEYQLRLKDMNYNEKIKEVTEKFTQELEQDKNRYELLREEKNDLEMEYADKIKQVQDQH 855

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BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Match: A0A8K1FFZ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FFZ7_PYTOL)

HSP 1 Score: 109 bits (272), Expect = 1.810e-25
Identity = 55/89 (61.80%), Postives = 77/89 (86.52%), Query Frame = 2

Query:    2 EELLVTRADLDEKSAYAAELKNKADELALHNEYQLRLKDMNYSEKIKEISEKATQDLEQGRNKFELLREEKNDVQLECEDKLRRMEEQH 268
            EE+LVT++DL+EK+A   ELKNK DEL LHNEYQLRLKDM Y+E +KE++EK T ++E  +NK+ELLRE+KND+++E E+K+++MEE+H
Sbjct: 2011 EEILVTKSDLEEKNALMLELKNKVDELMLHNEYQLRLKDMTYNENLKELTEKFTHEIEGEKNKYELLREDKNDIEMEYEEKIKQMEEKH 2099

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig17743.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A5D6XNB2_9STRA	2.170e-29	60.36	Uncharacterized protein n=1 Tax=Pythium brassicum ...	[more]
A0A6A3SQT7_9STRA	2.590e-29	57.66	Cilia-and flagella-associated protein 57 n=3 Tax=P...	[more]
A0A3F2RUX9_9STRA	2.980e-29	57.66	Uncharacterized protein n=4 Tax=Phytophthora kerno...	[more]
A0A6G0QJM9_9STRA	3.940e-29	57.66	Cilia-and flagella-associated protein 57 n=1 Tax=P...	[more]
G5AB45_PHYSP	4.040e-29	57.66	Uncharacterized protein n=23 Tax=Phytophthora TaxI...	[more]
H3GPP5_PHYRM	4.050e-29	57.66	Uncharacterized protein n=1 Tax=Phytophthora ramor...	[more]
A0A6A3I5X4_9STRA	2.590e-28	57.66	Cilia-and flagella-associated protein 57 n=2 Tax=P...	[more]
D0N9R4_PHYIT	4.850e-28	55.86	WD domain-containing protein, putative n=1 Tax=Phy...	[more]
A0A2R5GZ13_9STRA	4.860e-28	66.29	Cilia-and flagella-associated protein 57 n=1 Tax=H...	[more]
A0A8K1FFZ7_PYTOL	1.810e-25	61.80	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig17743	contig	P-wetherbeei_contig17743:78..766 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	338
Hectar predicted targeting category	other localisation
Exons	2
Cds size	336

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1683186125.6436749-CDS-P-wetherbeei_contig17743:79..345	1683186125.6436749-CDS-P-wetherbeei_contig17743:79..345	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig17743 80..345 -
1683186125.6535034-CDS-P-wetherbeei_contig17743:696..766	1683186125.6535034-CDS-P-wetherbeei_contig17743:696..766	Phaeothamnion wetherbeei SAG_119_79	CDS	P-wetherbeei_contig17743 697..766 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig17743.1.1	prot_P-wetherbeei_contig17743.1.1	Phaeothamnion wetherbeei SAG_119_79	polypeptide	P-wetherbeei_contig17743 80..766 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-wetherbeei_contig17743:78..766-
coding sequence from alignment at P-wetherbeei_contig17743:78..766-

protein sequence of mRNA_P-wetherbeei_contig17743.1.1

>prot_P-wetherbeei_contig17743.1.1 ID=prot_P-wetherbeei_contig17743.1.1|Name=mRNA_P-wetherbeei_contig17743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=112bp
GGAAGDAGGPRREERLRRRAQKQGGRASAPQRVPAAPQGHELLREDQGNF
REGDAGPGAGAQQVRIAPGREERCAAGVRGQAAPHGGAAPAPAAGARARV
PAAGHGRGGALP

mRNA from alignment at P-wetherbeei_contig17743:78..766-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-wetherbeei_contig17743.1.1 ID=mRNA_P-wetherbeei_contig17743.1.1|Name=mRNA_P-wetherbeei_contig17743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=689bp|location=Sequence derived from alignment at P-wetherbeei_contig17743:78..766- (Phaeothamnion wetherbeei SAG_119_79)
GGAGGAGCTGCTGGTGACGCGGGCGGACCTCGACGAGAAGAGCGCCTACG
CCGCCGAGCTCAAAAACAAGGTACGGGCAGCTTTTTTGCTTCGGGGCATG
TTATTTCTTGCCCCTTCTCTTCTATTACAGTCGCTTCTTCCGCTGCCAGC
GCGGAGCTTGCCACTGAGACCTGAGGGCGTGGCAAGGGCCGTATGAGCAG
CATTTCTGTTGCGGGTGGAGGCTTATGCCGCTGCTGCTGCCTCCGCCGCA
ATGCGCAAGCGCCTGCGGTTCTTGTCGCCCCGCTATCCCCGCGTTGCGTG
CGCTGTTCGCACTTCTAAGTTTTCTCATTCCCACCGATCTCCTTTCCCTC
AACAATAACGATACGCTCTGCTTGACATCTGCCCGCCGTTCGTTCCCCGT
TCCGTCTCCCTCTGCCGGCAGGCGGACGAGCTAGCGCTCCACAACGAGTA
CCAGCTGCGCCTCAAGGACATGAACTACTCCGAGAAGATCAAGGAAATTT
CCGAGAAGGCGACGCAGGACCTGGAGCAGGGGCGCAACAAGTTCGAATTG
CTCCGGGAAGAGAAGAACGATGTGCAGCTGGAGTGCGAGGACAAGCTGCG
CCGCATGGAGGAGCAGCACCAGCACCTGCAGCAGGAGCGCGAGCGCGAGT
ACCAGCAGCGGGTCATGGCCGAGGTGGAGCGCTACCAGG

Coding sequence (CDS) from alignment at P-wetherbeei_contig17743:78..766-

>mRNA_P-wetherbeei_contig17743.1.1 ID=mRNA_P-wetherbeei_contig17743.1.1|Name=mRNA_P-wetherbeei_contig17743.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=336bp|location=Sequence derived from alignment at P-wetherbeei_contig17743:78..766- (Phaeothamnion wetherbeei SAG_119_79)
GGAGGAGCTGCTGGTGACGCGGGCGGACCTCGACGAGAAGAGCGCCTACG
CCGCCGAGCTCAAAAACAAGGCGGACGAGCTAGCGCTCCACAACGAGTAC
CAGCTGCGCCTCAAGGACATGAACTACTCCGAGAAGATCAAGGAAATTTC
CGAGAAGGCGACGCAGGACCTGGAGCAGGGGCGCAACAAGTTCGAATTGC
TCCGGGAAGAGAAGAACGATGTGCAGCTGGAGTGCGAGGACAAGCTGCGC
CGCATGGAGGAGCAGCACCAGCACCTGCAGCAGGAGCGCGAGCGCGAGTA
CCAGCAGCGGGTCATGGCCGAGGTGGAGCGCTACCA