mRNA_P-wetherbeei_contig17731.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17731.2.1
Unique NamemRNA_P-wetherbeei_contig17731.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig17731.2.1 vs. uniprot
Match: A0A7S0TF31_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TF31_9STRA)

HSP 1 Score: 113 bits (282), Expect = 4.750e-27
Identity = 64/155 (41.29%), Postives = 84/155 (54.19%), Query Frame = 1 
Query:    1 YPATVALGALLRSWNPNESDVPG-FDEGLRVFDGADRAALELAALYRDCEVPFKVRGAPEVAAAAAKWTDTYLLAALGDPVNRVVGGTTHRSESNHFMYWKKKKGESA--RNYTPPTLVVKRCGFDRFLPLAEMADRQRLPPASPHLYLAVGAPP 456
            YPAT ALG ++R WNP+   VP  F E L VF+ +D     LA  YRD E+PFK+   P V     KWTD YL+    D +   V     +S +NHFMYW+ K G S+  +++  PT +V    F  +L  A  AD +   P  PH YL +G PP
Sbjct:   10 YPATEALGEIVRRWNPDNVTVPTPFVETLAVFNFSDPEERALAEEYRDAELPFKIFAVPNVETVRRKWTDPYLV----DSMTGHVQFKVEQSRNNHFMYWQHKAGASSLYKDWQAPTKIVTGVSFSEWLNWAHAADAEETGPEVPHHYLMLGTPP 160
[Close]
BLAST of mRNA_P-wetherbeei_contig17731.2.1 vs. uniprot
Match: A0A482SW15_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW15_9ARCH)

HSP 1 Score: 92.0 bits (227), Expect = 6.170e-19
Identity = 52/145 (35.86%), Postives = 76/145 (52.41%), Query Frame = 1 
Query:   19 LGALLRSWNPNESDVP-GFDEGLRVFDGADRAALELAALYRDCEVPFKVRGAPEVAAAAAKWTDTYLLAALGDPVNRVVGGTTHRSESNHFMYWKKKKGESARNYTPPTLVVKRCGFDRFLPLAEMADRQRLPPASPHLYLAVGA 450
            L  +L  WNP+  ++P  F E L+ F+  D    E+AA YR+ E+PFK+         + KWTD YL   L     R       RS++NHFM+W  K  +S R +TPPT ++    F  +L +A+ AD+ +L   + H Y   GA
Sbjct:  114 LYTILERWNPDNPEIPESFREVLQHFNYGDPVEREMAAKYREAEMPFKLYNVSGFQETSNKWTDVYLNEKLEGSSRR---SHVERSKNNHFMFWSGKP-QSLREFTPPTQIISDMRFTEWLHIAKEADQNKLSNITEHFYFMSGA 254
[Close]
BLAST of mRNA_P-wetherbeei_contig17731.2.1 vs. uniprot
Match: A0A7S0T9C5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T9C5_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 5.420e-14
Identity = 57/149 (38.26%), Postives = 72/149 (48.32%), Query Frame = 1 
Query:   28 LLRSWNPNESDVPGFD---EGLRVFDGADRAALELAALYRDCEVPFKVRGAPEVAAAAAKW-TDTYLLAALGDPVNRVVGGTTHRSESNHFMYW------KKKKGESARNYTPPTLVVKRCGFDRFLPLAEMADRQRLPPASPHLYLAV 444
            +LR W  ++ ++P      +GL VFD      LE A  YR+ EVPF VRG P++A    +W T  YL A +GD         T  S S  F YW      KKK  E    Y PPT V +   F  +L LA + D + L P SPH Y  V
Sbjct:  115 VLRQWPADDPELPASGILYQGLCVFDVRKNGNLEKALNYRNAEVPFVVRGDPQIAQTVERWNTPDYLQALIGDTPQG-----TELSASGSFTYWTDSGVDKKKYPE----YKPPTQVSEMT-FSEWLELANVTDSKLLTPESPHYYFKV 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17731.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0TF31_9STRA4.750e-2741.29Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A482SW15_9ARCH6.170e-1935.86JmjC domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S0T9C5_9STRA5.420e-1438.26Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17731contigP-wetherbeei_contig17731:335..802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps1797
PFAMsCupin_8
Model size468
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.77e-12
EggNOG OGs2CV5Y@1|root,2RRCZ@2759|Eukaryota,2XBQX@2836|Bacillariophyta
DescriptionCupin-like domain
Cds size468
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186125.206593-CDS-P-wetherbeei_contig17731:334..8021683186125.206593-CDS-P-wetherbeei_contig17731:334..802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17731 335..802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17731.2.1prot_P-wetherbeei_contig17731.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17731 335..802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17731.2.1

>prot_P-wetherbeei_contig17731.2.1 ID=prot_P-wetherbeei_contig17731.2.1|Name=mRNA_P-wetherbeei_contig17731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
YPATVALGALLRSWNPNESDVPGFDEGLRVFDGADRAALELAALYRDCEV
PFKVRGAPEVAAAAAKWTDTYLLAALGDPVNRVVGGTTHRSESNHFMYWK
KKKGESARNYTPPTLVVKRCGFDRFLPLAEMADRQRLPPASPHLYLAVGA
PPTVGT
back to top

mRNA from alignment at P-wetherbeei_contig17731:335..802-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17731.2.1 ID=mRNA_P-wetherbeei_contig17731.2.1|Name=mRNA_P-wetherbeei_contig17731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig17731:335..802- (Phaeothamnion wetherbeei SAG_119_79)
TACCCCGCGACGGTCGCCCTGGGCGCGCTGCTCCGGTCGTGGAACCCGAA
TGAGTCGGACGTTCCGGGCTTTGACGAGGGTCTCCGCGTGTTCGACGGCG
CCGACCGCGCCGCGCTCGAGCTGGCCGCCCTCTACCGCGACTGCGAGGTG
CCCTTCAAGGTCCGTGGCGCTCCGGAGGTGGCGGCGGCGGCCGCCAAGTG
GACGGACACCTACCTGCTGGCGGCTCTGGGCGACCCGGTGAACCGCGTTG
TGGGCGGGACGACGCACCGCTCCGAGAGCAACCACTTCATGTACTGGAAG
AAGAAGAAAGGGGAGAGTGCCCGCAACTACACGCCGCCGACGCTTGTCGT
GAAGCGCTGCGGCTTCGACCGCTTCCTGCCGCTGGCGGAGATGGCAGACC
GGCAGCGGCTGCCGCCGGCGTCGCCGCACCTTTATCTCGCCGTGGGGGCG
CCCCCGACCGTGGGAACG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17731:335..802-

>mRNA_P-wetherbeei_contig17731.2.1 ID=mRNA_P-wetherbeei_contig17731.2.1|Name=mRNA_P-wetherbeei_contig17731.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig17731:335..802- (Phaeothamnion wetherbeei SAG_119_79)
TACCCCGCGACGGTCGCCCTGGGCGCGCTGCTCCGGTCGTGGAACCCGAA
TGAGTCGGACGTTCCGGGCTTTGACGAGGGTCTCCGCGTGTTCGACGGCG
CCGACCGCGCCGCGCTCGAGCTGGCCGCCCTCTACCGCGACTGCGAGGTG
CCCTTCAAGGTCCGTGGCGCTCCGGAGGTGGCGGCGGCGGCCGCCAAGTG
GACGGACACCTACCTGCTGGCGGCTCTGGGCGACCCGGTGAACCGCGTTG
TGGGCGGGACGACGCACCGCTCCGAGAGCAACCACTTCATGTACTGGAAG
AAGAAGAAAGGGGAGAGTGCCCGCAACTACACGCCGCCGACGCTTGTCGT
GAAGCGCTGCGGCTTCGACCGCTTCCTGCCGCTGGCGGAGATGGCAGACC
GGCAGCGGCTGCCGCCGGCGTCGCCGCACCTTTATCTCGCCGTGGGGGCG
CCCCCGACCGTGGGAACG
back to top