mRNA_P-wetherbeei_contig17726.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17726.1.1
Unique NamemRNA_P-wetherbeei_contig17726.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A6H5K0C3_9PHAE (AMP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0C3_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 4.080e-74
Identity = 114/156 (73.08%), Postives = 132/156 (84.62%), Query Frame = 1
Query:    1 WDSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEGEQA 468
            W+S L+ +YTSGTTGLPKASKI+HLRF+S A +FS +A LR  DR+YCALPLYHS+GGMLGVGGCWRAG TLVVR RFSVR F+ DCV ++CSVVQYIGE+ARYLVNS  + LD QC IRVAFGNG+ PDVWRRFQQR+ V ++ EFYASTEG  A
Sbjct:  232 WNSPLIYIYTSGTTGLPKASKISHLRFFSSAVMFSVTARLRSDDRVYCALPLYHSSGGMLGVGGCWRAGCTLVVRRRFSVRHFSSDCVAHRCSVVQYIGEVARYLVNSSETDLDQQCSIRVAFGNGLSPDVWRRFQQRYHVQRICEFYASTEGNVA 387          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7S4NQP8_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NQP8_9EUKA)

HSP 1 Score: 189 bits (481), Expect = 4.040e-54
Identity = 90/152 (59.21%), Postives = 110/152 (72.37%), Query Frame = 1
Query:   13 LLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEGEQA 468
            LL +YTSGTTGLPKA+ +T +R+ S A  F  +  +   DRIYC LPLYHSA GMLGVG  W +G T+VVR +FS R++  DC LY C+VVQYIGEL RYL  SP SP D Q R+R+A GNG+RPDVW +F +RFGV  + EFY +TEG  A
Sbjct:  235 LLYIYTSGTTGLPKAAAVTSVRYTSAAKAFHMAFNITEEDRIYCCLPLYHSAAGMLGVGMSWASGATMVVRRKFSTRNYWRDCALYDCTVVQYIGELCRYLTLSPESPHDRQHRVRLAVGNGLRPDVWGKFVERFGVETIGEFYGATEGNTA 386          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7S3MDT4_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDT4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.360e-53
Identity = 88/148 (59.46%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   16 LLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            L ++TSGTTGLPKA KI+H RF+ GA   S    L+PG R+Y  LPLYHSA GMLGVGG  R G T+VVR +FSVR+F+ D V Y C+ VQYIGEL RYLVN+P    D + ++  A GNGMRPD+W +FQ+R+ V +V+EFYA+TEG
Sbjct:  238 LYIFTSGTTGLPKAGKISHTRFFLGALPVSIFCYLQPGQRLYTCLPLYHSAAGMLGVGGVLRTGATMVVRRKFSVRAFSADLVKYNCTTVQYIGELCRYLVNAPLCEADAKVKLDFAIGNGMRPDIWDKFQRRYNVGRVIEFYAATEG 385          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A058ZAT4_FONAL (Uncharacterized protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZAT4_FONAL)

HSP 1 Score: 182 bits (463), Expect = 1.580e-51
Identity = 89/147 (60.54%), Postives = 109/147 (74.15%), Query Frame = 1
Query:   19 LVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            LVYTSGTTGLPKA+ I H RF + A+ F  +   R  D +Y  LPLYHSAGGM+GVG   R G T+V R RFS  +F+ D V YKC+VVQYIGEL RYL+ + P+P D Q R+R+AFGNG+RPDVW +FQ RFG+ ++ EFYASTEG
Sbjct:  226 LVYTSGTTGLPKAAVIRHARFLAAASAFGRTFCFRETDILYMVLPLYHSAGGMIGVGMVLRDGATIVQRSRFSAAAFSRDLVQYKCTVVQYIGELCRYLLAAAPAPEDRQHRVRLAFGNGLRPDVWPQFQARFGIPEIGEFYASTEG 372          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7S1XS44_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XS44_9STRA)

HSP 1 Score: 177 bits (449), Expect = 6.720e-51
Identity = 87/153 (56.86%), Postives = 110/153 (71.90%), Query Frame = 1
Query:    4 DSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTS-AGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            DS L L++TSGTTGLPKASKIT+LR  +   +   +   L P D IYC LPL H++GGMLG+G   R     +VR +FS+RSFA DCV +  +VVQYIGELARYL + P  P +    IRVA GNG+RPDVW +FQ+RFGV +++EFYAS+EG
Sbjct:   26 DSKLFLIFTSGTTGLPKASKITNLRMLAAGHMLDMAWQRLTPSDGIYCPLPLSHASGGMLGIGAAIRWRCRFIVRSKFSLRSFATDCVTHNVTVVQYIGELARYLASKPEDPREKDLGIRVAMGNGLRPDVWEKFQKRFGVEQIIEFYASSEG 178          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A448Z3C2_9STRA (AMP-binding domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3C2_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.010e-50
Identity = 84/153 (54.90%), Postives = 107/153 (69.93%), Query Frame = 1
Query:    1 WDSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            WD T L +YTSGTTG PKASK+ H+R W           LR GDR+YC LPL+HS+G  LG+G C ++G T VVR +FSVR F+ D   ++C+ VQYIGE+ARYLV++PPSP D   R+R A GNGM  ++W  FQ+R+ +  V EFYASTEG
Sbjct:  253 WDGTCLYIYTSGTTGFPKASKMNHMRIWMMGCAGKKLCRLRSGDRLYCPLPLHHSSGLGLGLGACLQSGCTTVVRPKFSVRQFSRDIATHRCTGVQYIGEMARYLVSAPPSPFDSDVRLRFALGNGMPQEIWLPFQKRYNIDLVNEFYASTEG 405          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7R9UFC9_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UFC9_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.080e-49
Identity = 83/153 (54.25%), Postives = 104/153 (67.97%), Query Frame = 1
Query:    1 WDSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            W ST LL++TSGTTGLPKASKI HLR +    + +T  GLRP D +Y  LPL HS GGM+GV G   AG   V R +FSVR F HDC  Y  +V+QYIGELARYL +S         ++R A GNG+RPDVW  F++++ +  +VEFYA+TEG
Sbjct:   45 WSSTALLMFTSGTTGLPKASKIHHLRLYLAGKVLATLTGLRPSDVVYSPLPLSHSGGGMMGVAGVLAAGSCFVTRTKFSVRKFNHDCRTYNVTVLQYIGELARYLTSSAAKDDGPPVQLRAAIGNGLRPDVWSVFKEKYRIGLIVEFYAATEG 197          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7S3FER4_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FER4_9VIRI)

HSP 1 Score: 176 bits (446), Expect = 5.490e-49
Identity = 86/150 (57.33%), Postives = 104/150 (69.33%), Query Frame = 1
Query:   10 TLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            TL  +YTSGTTGLPKA+KI+H+RF   A   +    +   D+ YCALPLYHSAGGML VGG W AG   V+R +FS  +F  DC    C+V QYIGEL RYL+N+P  P D   ++R+  GNGMRPDVW  F +RFGVA V EFYA+TEG
Sbjct:  256 TLFYIYTSGTTGLPKAAKISHMRFALAATAVTRIYDIGSTDKYYCALPLYHSAGGMLAVGGAWEAGIPCVLRPKFSASNFFKDCRDNDCTVAQYIGELCRYLLNTPERPGDRDHKVRMVVGNGMRPDVWTPFMERFGVAAVGEFYAATEG 405          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: UPI002003442F (long-chain fatty acid transport protein 4 isoform X3 n=1 Tax=Hyalella azteca TaxID=294128 RepID=UPI002003442F)

HSP 1 Score: 172 bits (435), Expect = 5.580e-49
Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 1
Query:   13 LLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            ++ +YTSGTTGLPKA+ ITH R+   A       G+ P D +Y  LPLYH+AGG +GVG     G T+ ++ +FSVR++  DC  Y C+V QYIGE+ RYL+NSPPSP D Q ++RV FGNG+RP +W++FQ RF + +V EFY STEG
Sbjct:  222 IVYIYTSGTTGLPKAAVITHSRYLFAAVGMLCMVGITPDDTLYEPLPLYHTAGGNIGVGMTISDGVTVAIKKKFSVRTYFPDCERYGCTVAQYIGEICRYLLNSPPSPADKQHKLRVVFGNGLRPQIWQQFQDRFAIPRVAEFYGSTEG 370          
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Match: A0A7S4EIB1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EIB1_9STRA)

HSP 1 Score: 176 bits (446), Expect = 7.710e-49
Identity = 79/153 (51.63%), Postives = 106/153 (69.28%), Query Frame = 1
Query:    1 WDSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCALPLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGELARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYASTEG 459
            W  T L +YTSGTTGLPKASK+ H+R W G  +      LR  DR+YC LPL+HS+G +LG+G C + G T+V+R +FSVR F+ D + ++C+ VQYIGE+ RYLV++P +PLD   R+R A GNGM   +W  FQ R+ +  + EFY STEG
Sbjct:  248 WKETCLYIYTSGTTGLPKASKMNHMRIWMGGCVGKKLCRLRSDDRLYCPLPLHHSSGLLLGLGSCLQRGCTMVIRPKFSVRHFSRDILTHRCTGVQYIGEMTRYLVSAPSNPLDSDIRLRFALGNGMPAKIWTSFQSRYNIDIINEFYGSTEG 400          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17726.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0C3_9PHAE4.080e-7473.08AMP-binding domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4NQP8_9EUKA4.040e-5459.21Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7S3MDT4_9STRA6.360e-5359.46Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A058ZAT4_FONAL1.580e-5160.54Uncharacterized protein n=1 Tax=Fonticula alba Tax... [more]
A0A7S1XS44_9STRA6.720e-5156.86Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A448Z3C2_9STRA1.010e-5054.90AMP-binding domain-containing protein n=1 Tax=Pseu... [more]
A0A7R9UFC9_9STRA4.080e-4954.25Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3FER4_9VIRI5.490e-4957.33Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
UPI002003442F5.580e-4953.02long-chain fatty acid transport protein 4 isoform ... [more]
A0A7S4EIB1_9STRA7.710e-4951.63Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17726contigP-wetherbeei_contig17726:295..1274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYL9
PFAMsAMP-binding,AMP-binding_C
Model size468
Max annot lvl2759|Eukaryota
KEGG koko:K08745
KEGG TC4.C.1.1.1,4.C.1.1.9
KEGG Pathwayko03320,ko04931,map03320,map04931
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.06e-73
EggNOG OGsKOG1179@1|root,KOG1179@2759|Eukaryota
Descriptionvery long-chain fatty acid-CoA ligase activity
Cds size468
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01004,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.9947433-CDS-P-wetherbeei_contig17726:294..3481683186124.9947433-CDS-P-wetherbeei_contig17726:294..348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17726 295..348 +
1683186125.0050297-CDS-P-wetherbeei_contig17726:532..7861683186125.0050297-CDS-P-wetherbeei_contig17726:532..786Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17726 533..786 +
1683186125.014302-CDS-P-wetherbeei_contig17726:1114..12741683186125.014302-CDS-P-wetherbeei_contig17726:1114..1274Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17726 1115..1274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17726.1.1prot_P-wetherbeei_contig17726.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17726 295..1274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17726.1.1

>prot_P-wetherbeei_contig17726.1.1 ID=prot_P-wetherbeei_contig17726.1.1|Name=mRNA_P-wetherbeei_contig17726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=156bp
WDSTLLLVYTSGTTGLPKASKITHLRFWSGAALFSTSAGLRPGDRIYCAL
PLYHSAGGMLGVGGCWRAGGTLVVRGRFSVRSFAHDCVLYKCSVVQYIGE
LARYLVNSPPSPLDGQCRIRVAFGNGMRPDVWRRFQQRFGVAKVVEFYAS
TEGEQA
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mRNA from alignment at P-wetherbeei_contig17726:295..1274+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17726.1.1 ID=mRNA_P-wetherbeei_contig17726.1.1|Name=mRNA_P-wetherbeei_contig17726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=980bp|location=Sequence derived from alignment at P-wetherbeei_contig17726:295..1274+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGACTCAACGCTGCTCTTAGTCTACACATCCGGCACCACGGGCCTGCC CAAGGTGAGTCCGCGCCGATGGCGGCGGCGGCGCGGTGGCGACCAAGGAG GATGCTGGAACGGGAGCGCGAGCTGGACAACATCGGTGCTATCCGGTGAC TTCTTTCACGGCGAAAGTTCTAACACTGAAAGGTGCGTTTCACCCGCCGC TTTCTACTTCCGTTGCACTTCCCAACAAACACAACCAGGCCTCCAAGATC ACCCACCTCCGATTCTGGAGTGGTGCTGCCCTCTTCTCCACATCGGCCGG CCTCCGCCCGGGCGACCGCATCTACTGTGCACTGCCGCTCTACCATTCGG CGGGCGGCATGCTGGGCGTTGGCGGCTGCTGGCGCGCCGGCGGCACGCTC GTGGTGCGGGGCAGGTTCAGCGTGCGGTCGTTCGCGCACGACTGCGTTCT GTACAAGTGCTCCGTGGTGCAGTACATTGGGGAGCTGGCCAGGTGAAGGG GCAGGGAGTGTTTCACTGAGTGGTTTCGTGTGGTCACTGAGCTCTCCGGC TGGGGTCCTCCTTCCTTCCTTCTCTTCCTTGGCTGTTCCGTTTCCGACCT GTACTTGCACAACGCCGGCAACGATGATAGCGCGTTTGGTCGCAGGTGTC GTACTTTGGGCTCAGATAGCTGTCATTTCGCTTGTTTACTTTGGCCGTCC TTCATTCTTTTAGGAGAGTCTTTGCCGGGTGCGGTCGCTGCACCTTTGGT TGACTGTAAACCGGCCGATTGCCAAAAGAAGCGTATCAAACGAGACGACA CGTCGCGCAAAATGCGGCAGGTACCTAGTCAACTCGCCGCCGTCGCCGCT GGATGGACAATGCCGCATCCGGGTGGCGTTCGGTAACGGCATGCGGCCCG ACGTGTGGCGGAGGTTCCAACAGCGCTTCGGCGTCGCCAAGGTCGTCGAG TTTTACGCATCCACGGAAGGTGAGCAAGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17726:295..1274+

>mRNA_P-wetherbeei_contig17726.1.1 ID=mRNA_P-wetherbeei_contig17726.1.1|Name=mRNA_P-wetherbeei_contig17726.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=468bp|location=Sequence derived from alignment at P-wetherbeei_contig17726:295..1274+ (Phaeothamnion wetherbeei SAG_119_79)
TGGGACTCAACGCTGCTCTTAGTCTACACATCCGGCACCACGGGCCTGCC
CAAGGCCTCCAAGATCACCCACCTCCGATTCTGGAGTGGTGCTGCCCTCT
TCTCCACATCGGCCGGCCTCCGCCCGGGCGACCGCATCTACTGTGCACTG
CCGCTCTACCATTCGGCGGGCGGCATGCTGGGCGTTGGCGGCTGCTGGCG
CGCCGGCGGCACGCTCGTGGTGCGGGGCAGGTTCAGCGTGCGGTCGTTCG
CGCACGACTGCGTTCTGTACAAGTGCTCCGTGGTGCAGTACATTGGGGAG
CTGGCCAGGTACCTAGTCAACTCGCCGCCGTCGCCGCTGGATGGACAATG
CCGCATCCGGGTGGCGTTCGGTAACGGCATGCGGCCCGACGTGTGGCGGA
GGTTCCAACAGCGCTTCGGCGTCGCCAAGGTCGTCGAGTTTTACGCATCC
ACGGAAGGTGAGCAAGCC
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