mRNA_P-wetherbeei_contig17722.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17722.1.1
Unique NamemRNA_P-wetherbeei_contig17722.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: W7UBX2_9STRA (Protein cbby n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBX2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-7
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  292 GKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            G LLE GGGKERMTAHWN+VGWP+GY S+A R
Sbjct:   93 GNLLEVGGGKERMTAHWNKVGWPSGYDSDAKR 124
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7S1UAE3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAE3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-7
Identity = 26/32 (81.25%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:  292 GKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            GKLLE GGGKERMTAHWN VGWPAGY  E  R
Sbjct:  132 GKLLEVGGGKERMTAHWNEVGWPAGYDDEEKR 163
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A8J2SJB9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJB9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.050e-7
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  292 GKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            G+LLETGGGKERMTAHWN VGWPAGY    S+
Sbjct:   93 GELLETGGGKERMTAHWNEVGWPAGYEDAESQ 124
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7S2V8N0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N0_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.620e-7
Identity = 40/106 (37.74%), Postives = 48/106 (45.28%), Query Frame = 1 
Query:   46 ALPEAVIFDCDGVLGAFLSVQGARSILSSIFFCPSTFSFERYSRCDGKKR*WTRGDLMTSR*SALVNSCQVSCVLARLMSRCGKLLETGGGKERMTAHWNRVGWPA 363
            A+PEA++FDCDGVL A     G R   +++F        ER    D     WT                             G+LLE GGGKERMTAHWN VGWP+
Sbjct:   46 AVPEAILFDCDGVL-ADTERDGHRPAFNAVFE-------ERRLDTD-----WTP-------------------------ELYGRLLEVGGGKERMTAHWNEVGWPS 113
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7S0BHV5_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHV5_9RHOD)

HSP 1 Score: 57.8 bits (138), Expect = 6.070e-7
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  283 SRCGKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            SR GKLLE GGGKERMTAH+N VGWP GY +E S+
Sbjct:   24 SRYGKLLEVGGGKERMTAHFNEVGWPEGYTTEESQ 58
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A835Z3K7_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3K7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.320e-6
Identity = 39/113 (34.51%), Postives = 48/113 (42.48%), Query Frame = 1 
Query:   49 LPEAVIFDCDGVLGAFLSVQGARSILSSIFFCPSTFSFERYSRCDGKKR*WTRGDLMTSR*SALVNSCQVSCVLARLMSRCGKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            LP+A+IFDCDGVL A     G R   +  F                                       + CV    +   GKLLE GGGKERMTAHW++VGWP G   +A +
Sbjct:   29 LPQALIFDCDGVL-ADTERDGHRPAFNEAFKAKG-----------------------------------IDCVWD--VDLYGKLLEVGGGKERMTAHWDKVGWPLGITEKADK 103
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7S2FPW0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FPW0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.920e-6
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  292 GKLLETGGGKERMTAHWNRVGWPAGYHSEASR 387
            G+LL  GGGKERMTAHWN+VGWPA Y S+ SR
Sbjct:   93 GELLSVGGGKERMTAHWNKVGWPAEYESDESR 124
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7R9WSC9_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSC9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.020e-6
Identity = 23/30 (76.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  280 MSRCGKLLETGGGKERMTAHWNRVGWPAGY 369
            + R GKLLE GGGKERMTAHWN VGWP G+
Sbjct:  120 VERYGKLLEVGGGKERMTAHWNEVGWPQGF 149
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: F0XWZ9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWZ9_AURAN)

HSP 1 Score: 55.5 bits (132), Expect = 8.440e-6
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:  280 MSRCGKLLETGGGKERMTAHWNRVGWPAGY 369
            + + G+LLETGGGKERMTAHW+  GWPAGY
Sbjct:   78 VDKYGQLLETGGGKERMTAHWDAAGWPAGY 107
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BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Match: A0A7S1ZBJ4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZBJ4_TRICV)

HSP 1 Score: 55.5 bits (132), Expect = 8.820e-6
Identity = 38/113 (33.63%), Postives = 44/113 (38.94%), Query Frame = 1 
Query:   34 TVLRALPEAVIFDCDGVLGAFLSVQGARSILSSIFF---CPSTFSFERYSRCDGKKR*WTRGDLMTSR*SALVNSCQVSCVLARLMSRCGKLLETGGGKERMTAHWNRVGWPA 363
            + L   PEA++FDCDGVL A     G R   +  F        +  ERY                                        G LLE GGGKERMTAHWN VGWP+
Sbjct:   39 SALSVAPEAILFDCDGVL-ADTERDGHRPAFNRAFAENQIDEEWGVERY----------------------------------------GVLLEVGGGKERMTAHWNEVGWPS 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17722.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
W7UBX2_9STRA1.190e-778.13Protein cbby n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A7S1UAE3_9STRA1.400e-781.25Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A8J2SJB9_9STRA4.050e-778.13Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S2V8N0_9STRA5.620e-737.74Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0BHV5_9RHOD6.070e-774.29Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A835Z3K7_9STRA1.320e-634.51HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2FPW0_9STRA1.920e-675.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9WSC9_9STRA4.020e-676.67Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
F0XWZ9_AURAN8.440e-673.33Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1ZBJ4_TRICV8.820e-633.63Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17722contigP-wetherbeei_contig17722:29..943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size592
Hectar predicted targeting categorysignal anchor
Exons2
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.8950834-UTR-P-wetherbeei_contig17722:28..841683186124.8950834-UTR-P-wetherbeei_contig17722:28..84Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17722 29..84 -
1683186124.9325023-UTR-P-wetherbeei_contig17722:746..9431683186124.9325023-UTR-P-wetherbeei_contig17722:746..943Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17722 747..943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.9060304-CDS-P-wetherbeei_contig17722:84..3291683186124.9060304-CDS-P-wetherbeei_contig17722:84..329Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17722 85..329 -
1683186124.9214654-CDS-P-wetherbeei_contig17722:652..7461683186124.9214654-CDS-P-wetherbeei_contig17722:652..746Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17722 653..746 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17722.1.1prot_P-wetherbeei_contig17722.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17722 85..746 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17722.1.1

>prot_P-wetherbeei_contig17722.1.1 ID=prot_P-wetherbeei_contig17722.1.1|Name=mRNA_P-wetherbeei_contig17722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=113bp
MDERRFNDESLECACQFLPSFVRPSPAYVPLRQASRDGRRQGADDRPLEP
CRMACRLPLRGKPLFFPFVFPTICWLIRFTFTTSLCFIKRKRTETLRKRN
WGTRRLRAIYSF*
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mRNA from alignment at P-wetherbeei_contig17722:29..943-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17722.1.1 ID=mRNA_P-wetherbeei_contig17722.1.1|Name=mRNA_P-wetherbeei_contig17722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=915bp|location=Sequence derived from alignment at P-wetherbeei_contig17722:29..943- (Phaeothamnion wetherbeei SAG_119_79)
ATTGACCTGCCGCAAGCTTGTTTGCGCCCGGGAACCGTCTTGCGTGCCTT
GCCAGAAGCTGTCATCTTTGACTGCGACGGCGTTTTAGGTGCGTTTTTGT
CTGTTCAGGGCGCCCGGTCCATTCTTTCGTCGATTTTCTTTTGTCCTTCG
ACCTTCTCTTTCGAAAGATATTCCCGATGTGATGGCAAGAAGCGGTAATG
GACGAGAGGAGATTTAATGACGAGTCGCTAGAGTGCGCTTGTCAATTCTT
GCCAAGTTTCGTGCGTCCTAGCCCGGCTTATGTCCCGCTGCCTCCGTCTC
TTTGCTTTTGTTGTAGCTGACACGGAAAGAGACGGTCATCGAGTCGCCTT
CAATGAAGCCTTTTCGCAAAAAGGCATAGGTGAGGATGCATAGGAAAGGC
ACGCTGAGGACAAAGGAATTCACGACTTTCGCCACACTGCCTCTTAAAAG
AACTGCAGCTTCTCGCTTCCTTGTTTTCCTCGTTTCACTGAGAGGCGCGA
GCCGCGCCGCTATTACTGCCAACCTTGGCGAGGATTTATGCATAATCCAC
TATCAACGATTGACCCATTCACTGTTCGTCTCCCTCAGACTGCGTGTGGG
ATGTGGAATTGTACGGCAAGCTTCTAGAGACGGGCGGCGGCAAGGAGCGG
ATGACCGCCCACTGGAACCGTGTCGGATGGCCTGCCGGCTACCACTCCGA
GGCAAGCCGCTCTTTTTCCCATTCGTCTTCCCCACGATCTGCTGGCTGAT
TCGTTTCACCTTCACCACGTCCCTCTGTTTCATAAAAAGAAAGAGGACTG
AAACGTTGCGAAAGCGTAACTGGGGAACACGGCGGCTACGCGCCATTTAC
TCGTTCTAGCTTTTTGTCAAGCCTGAGAAATACCCCTTTCCTCACACGAT
GCACGTATAGAATTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17722:29..943-

>mRNA_P-wetherbeei_contig17722.1.1 ID=mRNA_P-wetherbeei_contig17722.1.1|Name=mRNA_P-wetherbeei_contig17722.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=339bp|location=Sequence derived from alignment at P-wetherbeei_contig17722:29..943- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGAGAGGAGATTTAATGACGAGTCGCTAGAGTGCGCTTGTCAATT
CTTGCCAAGTTTCGTGCGTCCTAGCCCGGCTTATGTCCCGCTGCGGCAAG
CTTCTAGAGACGGGCGGCGGCAAGGAGCGGATGACCGCCCACTGGAACCG
TGTCGGATGGCCTGCCGGCTACCACTCCGAGGCAAGCCGCTCTTTTTCCC
ATTCGTCTTCCCCACGATCTGCTGGCTGATTCGTTTCACCTTCACCACGT
CCCTCTGTTTCATAAAAAGAAAGAGGACTGAAACGTTGCGAAAGCGTAAC
TGGGGAACACGGCGGCTACGCGCCATTTACTCGTTCTAG
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