mRNA_P-wetherbeei_contig1770.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1770.2.1
Unique NamemRNA_P-wetherbeei_contig1770.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA)

HSP 1 Score: 192 bits (487), Expect = 6.740e-59
Identity = 89/161 (55.28%), Postives = 119/161 (73.91%), Query Frame = 1
Query:    4 WLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIAD 486
            ++ + + G + G++E ELA+D+LPVTC NF  LCTG+      A  T+ GTP+H + KGV ++ GDVEG  G+ SHS LG RYF DE F IPH++ GLL+MAN G DTNGSQFYVT+ PAPH+DGRSVAFGRV+ G+D V+++  +FS++ +PVS V I D
Sbjct:   63 YVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAATGPDGAPLTYKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGLGKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITD 223          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA)

HSP 1 Score: 185 bits (469), Expect = 1.500e-55
Identity = 91/166 (54.82%), Postives = 118/166 (71.08%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAGIV 498
            V+L + VDG D GR+E+EL  +ILP+T +NF  LCTG    E     ++  TP+H ++K  A+VAGDVE   G+GSHSALG RYF DEA ++PH   G++SM N G DTNGSQFY+T AP+P LDG SVAFGRV SG+D V  I+ +FS+RG PVS V +  AG++
Sbjct:  104 VYLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTG----ENPDGLSYADTPIHHVVKDSAIVAGDVELKTGKGSHSALGTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAGVL 265          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A6U1PLG6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PLG6_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.580e-54
Identity = 86/164 (52.44%), Postives = 114/164 (69.51%), Query Frame = 1
Query:    4 WLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAGI 495
            + +L +DG D G ++ ELA DILP TCSNF +LCTG    E +   ++ G+P+H I+KGV V+ GDVE   G G+HS LG RYF DE F+IPHA  GLLSMA  G  T  SQFY+TL PAPH+DGR VAFGR++SGLD ++ +   +S RG+P + + I+  G+
Sbjct:   71 YFQLTIDGEDVGEIQFELADDILPETCSNFKALCTG----ESEQGLSYCGSPIHHIVKGVGVIGGDVEKHDGTGNHSGLGKRYFEDEGFVIPHAEGGLLSMATSGVHTCASQFYLTLYPAPHMDGRCVAFGRIISGLDVLEAVYKQYSTRGKPAASILISACGL 230          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.140e-48
Identity = 89/200 (44.50%), Postives = 115/200 (57.50%), Query Frame = 1
Query:    4 WLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFV------------------------------------GTPVHRIIKGVAVVAGDVEGLGGRGSHSAL-GARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAG 492
            +  + VDG+ AGR+E ELA+D+LPVT  NF  LC G          T +                                    G+ +HR++ G  ++ GDVEG GG+ SHSA  G R+FPDEAFLIPH  PGLL+MAN G  TNGSQFY+T   A HLDGRSVAFGRV  GL+ V+ +  M+S+RG+PVS++ I + G
Sbjct:   83 FFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECG 282          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A7S1UAR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UAR4_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.900e-46
Identity = 82/166 (49.40%), Postives = 108/166 (65.06%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAGIV 498
            V+  + VDG   GR+ VE   D+LPVT  NF  L     AP+  A  T+  + +HRI+K  A+VAGDVEG  GR SHSALG RYF  E F +PH+ PG++SM +  RD NGSQFY+T+ P PHLDGR  AFGRV+ G+D V+++   FS    PVSD+   + G++
Sbjct:   65 VFFDVNVDGESKGRIVVETLDDVLPVTSENFQKLAM---APK-DAWLTYKNSGIHRIMKTSALVAGDVEGGSGRASHSALGRRYFEHEGFYVPHSEPGIVSMVSNKRDENGSQFYITIEPCPHLDGRCTAFGRVVEGMDLVQELRGTFSRHEIPVSDISFGETGVI 226          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN)

HSP 1 Score: 154 bits (389), Expect = 6.730e-45
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = 1
Query:   19 VDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPV-HRIIKGVAVVAGDVEGLGGRGSHSAL-GARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKIS-TMFSMRGRPVSDVRIADAG 492
            VDG  AGR+E+EL  ++LP TC NF  LC G GAP     + + G  +  R++KGV ++ G V+  GG  SHSA  G R F DE F +PHA PGLLSMAN G DTNGSQFY+T A APH+DGR VAFGRV +GLD V+ ++ T+++ RG PV  V IA  G
Sbjct:    8 VDGEAAGRIELELLDELLPETCENFRLLC-GDGAPS---GFGYAGANLARRVVKGVGLLGGVVDAPGG--SHSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACG 162          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA)

HSP 1 Score: 151 bits (381), Expect = 2.150e-42
Identity = 76/185 (41.08%), Postives = 113/185 (61.08%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPER----KAAYTFVGTPVHRIIKGVAVVAGDV---------------EGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAGIV 498
            V+L + +D    GR+ +ELA DILP+   NF  LC G+G        K    + G+ +HR++KG  +V GD+               +  GG G+HS LG R+FPDE+F IPH  PGLLSM + G   NGS F+++    PHLDGRSV FGRV+ G++ ++ ++  +++RGRPV+ VR+ +AG++
Sbjct:   81 VFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVM 265          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.640e-41
Identity = 77/185 (41.62%), Postives = 113/185 (61.08%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPER----KAAYTFVGTPVHRIIKGVAVVAGDV---------------EGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAGIV 498
            V+L L +D    GR+ +ELA DILP+   NF  LC G+G        K    + G+ +HR++KG  +V GD+               +  GG G+HS LG R+FPDE+F IPH  PGLLSM + G   NGS F+++    PHLDGRSV FGRV+ G++ ++ ++  +++RGRPV+ VR+ +AG++
Sbjct:  196 VFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAGREGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVM 380          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: L1IT53_GUITC (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IT53_GUITC)

HSP 1 Score: 142 bits (359), Expect = 6.980e-40
Identity = 76/164 (46.34%), Postives = 96/164 (58.54%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAG 492
            V+    ++G  AGR+  EL AD  P TC NF  LCTG    E K    + G   HRII G  +  GD     G G  S  G+  FPDEAF   H++PGLLSMANRG DTNGSQF++T  P P LDGR V FG+V+ G+D VK +    +  G+P ++ +I D G
Sbjct:   40 VFFDCSINGAPAGRVVFELFADKTPKTCENFRQLCTG----EAKGLAGYKGCSFHRIIPGFMIQGGDFTNHNGTGGMSIYGST-FPDEAFAFAHSSPGLLSMANRGPDTNGSQFFITTVPTPWLDGRHVIFGKVIEGMDVVKSLEAKGTSSGQPSAECKIDDCG 198          
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Match: A0A453BL39_AEGTS (PPIase cyclophilin-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453BL39_AEGTS)

HSP 1 Score: 144 bits (363), Expect = 2.700e-39
Identity = 76/167 (45.51%), Postives = 100/167 (59.88%), Query Frame = 1
Query:    1 VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGS---GAPERKAAYTFVGTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLLSMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSMRGRPVSDVRIADAG 492
            V+L + +DG  A R+  EL AD++P T  NF +LCTG    G   +K  Y F GT +HRII G    AGD     GRG  S  G ++  DE F + H  PG+LSMAN G +TNGSQF++T    PHLDG+ V FG+VL+G   +KK+  + S  G+P   V+I D G
Sbjct:   12 VFLEISIDGRPAKRITFELFADVVPKTAENFRALCTGEKGLGESTKKPLY-FKGTHIHRIIPGFMAQAGDFSRGDGRGGESIYGGKFPADENFKLKHDQPGILSMANSGENTNGSQFFITFKAVPHLDGKHVVFGKVLNGKALLKKLEALGSESGKPTCPVKIVDCG 177          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1770.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8D9_9STRA6.740e-5955.28Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribon... [more]
A0A7S2BM91_9STRA1.500e-5554.82Peptidyl-prolyl cis-trans isomerase n=1 Tax=Floren... [more]
A0A6U1PLG6_9STRA7.580e-5452.44Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
D7G0W9_ECTSI1.140e-4844.50Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
A0A7S1UAR4_9STRA2.900e-4649.40Peptidyl-prolyl cis-trans isomerase n=2 Tax=Phaeom... [more]
F0Y6J0_AURAN6.730e-4554.04Peptidyl-prolyl cis-trans isomerase (Fragment) n=1... [more]
W7TUT6_9STRA2.150e-4241.08Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannoc... [more]
A0A4D9CP74_9STRA1.640e-4141.62PPIase cyclophilin-type domain-containing protein ... [more]
L1IT53_GUITC6.980e-4046.34Peptidyl-prolyl cis-trans isomerase n=1 Tax=Guilla... [more]
A0A453BL39_AEGTS2.700e-3945.51PPIase cyclophilin-type domain-containing protein ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1770contigP-wetherbeei_contig1770:115..729 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G0W9
PFAMsHSP70,Pro_isomerase,TPR_1,TPR_2,TPR_8
Model size504
Max annot lvl2759|Eukaryota
KEGG koko:K01802,ko:K05864,ko:K20097
KEGG Pathwayko04217,ko04218,map04217,map04218
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.86e-49
EggNOG OGsCOG0652@1|root,KOG0546@2759|Eukaryota
Ec32 ortholog descriptionCyclophilin-type peptidyl-prolyl cis-trans isomerase domain
Ec32 orthologEc-23_002000.1
EC5.2.1.8
Descriptionpeptidyl-prolyl cis-trans isomerase activity
Cds size504
COG categoryO
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186124.014751-CDS-P-wetherbeei_contig1770:114..4821683186124.014751-CDS-P-wetherbeei_contig1770:114..482Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1770 115..482 -
1683186124.024568-CDS-P-wetherbeei_contig1770:593..7291683186124.024568-CDS-P-wetherbeei_contig1770:593..729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1770 594..729 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1770.2.1prot_P-wetherbeei_contig1770.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1770 115..729 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1770.2.1

>prot_P-wetherbeei_contig1770.2.1 ID=prot_P-wetherbeei_contig1770.2.1|Name=mRNA_P-wetherbeei_contig1770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
VWLRLEVDGIDAGRLEVELAADILPVTCSNFASLCTGSGAPERKAAYTFV
GTPVHRIIKGVAVVAGDVEGLGGRGSHSALGARYFPDEAFLIPHATPGLL
SMANRGRDTNGSQFYVTLAPAPHLDGRSVAFGRVLSGLDAVKKISTMFSM
RGRPVSDVRIADAGIVA*
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mRNA from alignment at P-wetherbeei_contig1770:115..729-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1770.2.1 ID=mRNA_P-wetherbeei_contig1770.2.1|Name=mRNA_P-wetherbeei_contig1770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=615bp|location=Sequence derived from alignment at P-wetherbeei_contig1770:115..729- (Phaeothamnion wetherbeei SAG_119_79)
GTATGGCTTCGCCTCGAGGTGGACGGCATCGATGCCGGTCGTTTGGAAGT GGAGCTCGCGGCGGACATCCTGCCGGTGACGTGCAGCAACTTTGCGAGCC TCTGCACTGGAAGCGGCGCGCCGGAGAGGAAAGCTGGTGAAGCAGCAGCA GGAGCCTCCATTGCGGCTGCTGATAGCGCCAGCAGCGATAGCGGCGTCGT CAGCAGTGCCGCTGGTGCCGACGCCGAGGTCGACGCAAGCGCTCCAGCAT ACACCTTCGTCGGAACGCCGGTGCACCGCATTATCAAGGGTGTCGCCGTT GTGGCCGGCGACGTCGAGGGGCTCGGGGGCCGCGGCAGCCACTCGGCGCT CGGCGCGCGCTACTTCCCGGACGAGGCCTTCCTCATCCCGCATGCGACGC CAGGCCTCCTGAGCATGGCGAACCGCGGCCGTGACACCAACGGCTCGCAG TTCTATGTCACGCTGGCGCCAGCGCCGCACCTGGACGGCCGCAGCGTTGC CTTCGGCAGGGTACTGTCCGGGCTGGATGCGGTGAAGAAGATCTCGACCA TGTTCAGCATGCGCGGCAGGCCCGTATCGGACGTCCGCATTGCCGACGCC GGCATAGTCGCATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1770:115..729-

>mRNA_P-wetherbeei_contig1770.2.1 ID=mRNA_P-wetherbeei_contig1770.2.1|Name=mRNA_P-wetherbeei_contig1770.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig1770:115..729- (Phaeothamnion wetherbeei SAG_119_79)
GTATGGCTTCGCCTCGAGGTGGACGGCATCGATGCCGGTCGTTTGGAAGT
GGAGCTCGCGGCGGACATCCTGCCGGTGACGTGCAGCAACTTTGCGAGCC
TCTGCACTGGAAGCGGCGCGCCGGAGAGGAAAGCTGCATACACCTTCGTC
GGAACGCCGGTGCACCGCATTATCAAGGGTGTCGCCGTTGTGGCCGGCGA
CGTCGAGGGGCTCGGGGGCCGCGGCAGCCACTCGGCGCTCGGCGCGCGCT
ACTTCCCGGACGAGGCCTTCCTCATCCCGCATGCGACGCCAGGCCTCCTG
AGCATGGCGAACCGCGGCCGTGACACCAACGGCTCGCAGTTCTATGTCAC
GCTGGCGCCAGCGCCGCACCTGGACGGCCGCAGCGTTGCCTTCGGCAGGG
TACTGTCCGGGCTGGATGCGGTGAAGAAGATCTCGACCATGTTCAGCATG
CGCGGCAGGCCCGTATCGGACGTCCGCATTGCCGACGCCGGCATAGTCGC
ATAA
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