mRNA_P-wetherbeei_contig17695.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17695.1.1
Unique NamemRNA_P-wetherbeei_contig17695.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A1D1ZYC2_AUXPR (TFIIB-type domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZYC2_AUXPR)

HSP 1 Score: 98.2 bits (243), Expect = 7.470e-22
Identity = 48/126 (38.10%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
            +  RC EC   D + D ++GD++CR CG+V++  ++ +  EWR F + D    DP+RVGGP++ LL DGGL T   GG+  DK L S+L++  A +++  A + +L+A F  +  +  D+ L D V
Sbjct:   12 FEQRCPECGESDFVEDHSSGDLICRSCGMVVEAHVIDERSEWRTFAEKDKESADPTRVGGPINPLLKDGGLSTMITGGKGVDKGLTSSLQRMQARTDS-GAGDRSLVAAFREIGRLCSDMSLQDVV 136          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A2P6VAI3_9CHLO (Transcription initiation factor IIB-2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VAI3_9CHLO)

HSP 1 Score: 96.3 bits (238), Expect = 4.070e-21
Identity = 52/138 (37.68%), Postives = 79/138 (57.25%), Query Frame = 1
Query:    1 VGAMTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGK--DPSRVGGPLDNLLSDGGLGTF--TVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
            +G   +G+   Y  +C +C   D + D A+GD++CR CGVV++  ++ +  EWR F D  GG   DP+RVGGP+++LLSDGG+ T      G D  L   L++  A +   +  + ALIA F  +  I   +RL D+V
Sbjct:    1 MGDFDVGLRLKYEQQCPDCGLSDFVEDHASGDLICRNCGVVVEAHVIDERSEWRTFADKDGGAGADPNRVGGPVNHLLSDGGMSTMIGAAKGVDHGLVRNLQRMQARTEVTT--DRALIAAFREIGKICSAMRLLDTV 136          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A2P6TTX1_CHLSO (Transcription initiation factor IIB-2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTX1_CHLSO)

HSP 1 Score: 95.5 bits (236), Expect = 7.790e-21
Identity = 53/138 (38.41%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    1 VGAMTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGK--DPSRVGGPLDNLLSDGGLGTFTVG--GRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
            +G   I +   Y  +C +C   D + D A+GD++CR CGVV++  ++ +  EWR F D  GG   DP+RVGGP+++LLSDGG+ T   G  G D  L   L++  A +   +  + ALIA F+ +  I   +RL D+V
Sbjct:    1 MGDFNINLRLKYEQQCPDCGLSDFVEDHASGDLICRNCGVVVEAHVIDERSEWRTFGDKDGGSGVDPNRVGGPVNHLLSDGGMSTMIGGAKGVDHGLVRNLQRMQARTEVTT--DRALIAAFKEIGKICAAMRLLDTV 136          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: E1ZH39_CHLVA (TFIIB-type domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZH39_CHLVA)

HSP 1 Score: 94.4 bits (233), Expect = 1.840e-20
Identity = 53/129 (41.09%), Postives = 76/129 (58.91%), Query Frame = 1
Query:   34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDD--SGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANET--ALIACFERVKDIAHDLRLHDSV 402
            Y  +C +C   D + D A+GD+VCR CGVV++  ++ +  EWR F D   SGG DP+RVGGP+++LLSDGG+ T   GG+  D AL   +R+      A     T  A+IA F  +  I   ++L D+V
Sbjct:   12 YEQQCPDCGQSDFVEDHASGDLVCRNCGVVVEAHVIDERSEWRTFADKVHSGGSDPNRVGGPVNHLLSDGGMSTMIGGGKGVDHAL---VREAGGCWPAGDGVTTDRAVIAAFREIGKICAAMKLLDTV 137          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A7S0RRQ4_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RRQ4_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 5.500e-17
Identity = 46/123 (37.40%), Postives = 67/123 (54.47%), Query Frame = 1
Query:   25 VAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRL 390
            +A    +C +C+G   + D A GD+VC+GCG+V++  ++ +  EWR F D D    DP+RVGGP + LL  GGL T    GRD      L +    SN     + AL+A F+ + D+   L L
Sbjct:    1 MATQERKCPDCNGIHFVEDHANGDIVCKGCGLVVEAHIIDERSEWRTFSDKDKESADPNRVGGPTNQLLEGGGLSTVIGKGRDGDANYMLNRLHTRSNNP---DRALVAAFKTLGDMCERLSL 120          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A059LIB9_9CHLO (TFIIB-type domain-containing protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LIB9_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 7.760e-17
Identity = 46/126 (36.51%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   34 YHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGR--DKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
            Y  +C EC   +   D +AGD++C+ CG V +  ++ +  EWR F D D  G DPSRVGG ++ LLSDGGL T    G+  D+ L + L++  A       ++ AL+  F  +  I   ++L D V
Sbjct:   10 YEQQCAECGDSNFEEDHSAGDLICKSCGTVAESRLIDERSEWRSFADGDKDGADPSRVGGAVNPLLSDGGLSTVLGAGKGVDRGLAANLQRMQA--RGAGVSDRALLTAFREIGKICSVMQLPDVV 133          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A250XC86_9CHLO (TFIIB-type domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XC86_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 7.500e-16
Identity = 42/117 (35.90%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   43 RCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRL 390
            +C +C G   + D AAGD+VC+GCG+V++  ++ +  EWR F D D    DPSRVGGP + LL  GGL T     ++  L  +       +   +  E  LI  F+++ D+   L L
Sbjct:    6 KCPDCGGYQFVEDHAAGDIVCKGCGLVVESHIIDERSEWRTFSDKDKDTADPSRVGGPSNPLLEGGGLSTVIGKAQNDPLGLSYSLNRLHTRGGNNPERNLITAFKKISDMCDQLSL 122          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A0D2MAW9_9CHLO (Transcription initiation factor IIB n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MAW9_9CHLO)

HSP 1 Score: 79.0 bits (193), Expect = 8.110e-16
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   13 TIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVG 261
            T GV       C  C G+D++   + GD+VC+GCG+V++  ++ +  EWR F D D  G DPSRVGG  + LL DGGLGT T+G
Sbjct:    5 TEGVGPRLERSCPNCGGKDMVEVHSEGDIVCKGCGLVVEDHIIDERSEWRTFGDKDKEGDDPSRVGGATNLLLDDGGLGT-TIG 87          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A7R9VQN9_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VQN9_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 8.820e-16
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   43 RCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLD-DSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAIS----NAKSANETALIACFERVKDIAHDLRLHDSV 402
            +C +C G   + D A GDVVCRGCG+V+Q+ ++ +  EWR F D D  G DP+RVGGP + LL  GG G  TV G+ +        G++ S    +A+SA +  ++A F+ + ++   L + +++
Sbjct:   11 KCPDCGGTSFVEDHAQGDVVCRGCGLVVQEHIIDERSEWRTFSDKDKEGTDPNRVGGPSNPLL--GGAGLSTVIGKVQG-----DAGNSFSLSRLHARSAQDRNMMAAFKLIGNMCEQLTVVNTI 128          
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Match: A0A833VGQ4_9POAL (Transcription initiation factor IIB-2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VGQ4_9POAL)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-15
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 1
Query:   46 CTECHGEDIIT-DEAAGDVVCRGCGVVLQQSMMSDTPEWRVFLDDSGGKDPSRVGGPLDNLLSDGGLGTFTV---GGRDKALRSALRKGSAISNAKSANETALIACFERVKDIAHDLRLHDSV 402
            CT+C  E ++  D +AGD +C  CG+VL+   + +T EWR F ++S   DP RVGGP++ LLSDGGL T      G R     S L +   + N +S N+  LI  F ++  +A  L L +++
Sbjct:   10 CTDCKRETVVVFDHSAGDTICSECGLVLEARSIDETSEWRTFANESSDNDPVRVGGPINPLLSDGGLSTVIAKSSGTRSDQRYSQLGR---LQNRES-NDGRLIQAFGKISIMADRLGLVNTI 128          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17695.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D1ZYC2_AUXPR7.470e-2238.10TFIIB-type domain-containing protein n=1 Tax=Auxen... [more]
A0A2P6VAI3_9CHLO4.070e-2137.68Transcription initiation factor IIB-2 n=1 Tax=Micr... [more]
A0A2P6TTX1_CHLSO7.790e-2138.41Transcription initiation factor IIB-2 n=1 Tax=Chlo... [more]
E1ZH39_CHLVA1.840e-2041.09TFIIB-type domain-containing protein n=1 Tax=Chlor... [more]
A0A7S0RRQ4_9CHLO5.500e-1737.40Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A059LIB9_9CHLO7.760e-1736.51TFIIB-type domain-containing protein n=1 Tax=Helic... [more]
A0A250XC86_9CHLO7.500e-1635.90TFIIB-type domain-containing protein n=1 Tax=Chlam... [more]
A0A0D2MAW9_9CHLO8.110e-1646.43Transcription initiation factor IIB n=1 Tax=Monora... [more]
A0A7R9VQN9_9CHLO8.820e-1636.80Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A833VGQ4_9POAL1.240e-1538.21Transcription initiation factor IIB-2 n=1 Tax=Care... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17695contigP-wetherbeei_contig17695:4..405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog554065.XP_005846958.1
PFAMsTFIIB,TF_Zn_Ribbon
Model size402
Max annot lvl3041|Chlorophyta
KEGG koko:K03124
KEGG Pathwayko03022,ko05169,ko05203,map03022,map05169,map05203
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.71e-21
EggNOG OGsCOG1405@1|root,KOG1597@2759|Eukaryota,37NPF@33090|Viridiplantae,34I2P@3041|Chlorophyta
DescriptionTFIIB zinc-binding
Cds size393
COG categoryK
BRITEko00000,ko00001,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.5475905-CDS-P-wetherbeei_contig17695:3..3961683186123.5475905-CDS-P-wetherbeei_contig17695:3..396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17695 4..396 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.55898-UTR-P-wetherbeei_contig17695:396..4051683186123.55898-UTR-P-wetherbeei_contig17695:396..405Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17695 397..405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17695.1.1prot_P-wetherbeei_contig17695.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17695 4..396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17695.1.1

>prot_P-wetherbeei_contig17695.1.1 ID=prot_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=131bp
MTIGVVAPYHLRCTECHGEDIITDEAAGDVVCRGCGVVLQQSMMSDTPEW
RVFLDDSGGKDPSRVGGPLDNLLSDGGLGTFTVGGRDKALRSALRKGSAI
SNAKSANETALIACFERVKDIAHDLRLHDSV
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mRNA from alignment at P-wetherbeei_contig17695:4..405-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17695.1.1 ID=mRNA_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig17695:4..405- (Phaeothamnion wetherbeei SAG_119_79)
GTCGGAGCCATGACGATTGGCGTCGTCGCACCGTATCACCTGCGATGCAC CGAATGCCACGGTGAGGACATCATCACGGACGAGGCGGCCGGCGACGTCG TCTGCCGAGGTTGCGGGGTGGTGCTGCAGCAGTCCATGATGTCCGACACG CCGGAGTGGCGGGTGTTCCTCGACGACAGCGGAGGGAAGGATCCCTCACG AGTAGGCGGTCCTCTTGACAACCTTCTGAGCGACGGCGGCCTCGGCACCT TCACGGTTGGCGGCCGAGACAAGGCCCTCAGGAGCGCTTTGCGCAAGGGC TCCGCCATCTCTAACGCCAAGTCCGCGAACGAGACCGCCCTGATTGCGTG CTTCGAGCGCGTGAAGGACATCGCGCACGACCTCCGGCTGCACGACAGCG TC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17695:4..405-

>mRNA_P-wetherbeei_contig17695.1.1 ID=mRNA_P-wetherbeei_contig17695.1.1|Name=mRNA_P-wetherbeei_contig17695.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=393bp|location=Sequence derived from alignment at P-wetherbeei_contig17695:4..405- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGATTGGCGTCGTCGCACCGTATCACCTGCGATGCACCGAATGCCA
CGGTGAGGACATCATCACGGACGAGGCGGCCGGCGACGTCGTCTGCCGAG
GTTGCGGGGTGGTGCTGCAGCAGTCCATGATGTCCGACACGCCGGAGTGG
CGGGTGTTCCTCGACGACAGCGGAGGGAAGGATCCCTCACGAGTAGGCGG
TCCTCTTGACAACCTTCTGAGCGACGGCGGCCTCGGCACCTTCACGGTTG
GCGGCCGAGACAAGGCCCTCAGGAGCGCTTTGCGCAAGGGCTCCGCCATC
TCTAACGCCAAGTCCGCGAACGAGACCGCCCTGATTGCGTGCTTCGAGCG
CGTGAAGGACATCGCGCACGACCTCCGGCTGCACGACAGCGTC
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