mRNA_P-wetherbeei_contig17676.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17676.1.1
Unique NamemRNA_P-wetherbeei_contig17676.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A1F4FFR9_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FFR9_9PROT)

HSP 1 Score: 256 bits (653), Expect = 6.230e-79
Identity = 133/272 (48.90%), Postives = 181/272 (66.54%), Query Frame = 3
Query:  576 RMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            R +   + L AL GC+  ++ Y+NAD  ++W+A  YF F GEQ  EL+ R+  FLAWHR   LP+Y+ LA   + R+ RGV + DL WGYD+ Q  +R++L A A EAA LLD+L A Q+  F +RL +ENR  AK+  +     +R+ +R +RN+ERLE+WFG+LS+AQ +RVR YSARAP   +LR+RDRKR Q EL AM RAR+A+Q+L  WA AWD  R+ AY    +  L EYF +L+DLDR L+ EQRE A  RL+ +A    +L 
Sbjct:    4 RAVFVFLLLAALQGCSVTRIAYDNADVFLRWQANSYFDFRGEQSEELDHRLAAFLAWHRAKALPQYAQLAEDASARMLRGVKREDLEWGYDAVQAQIREALGAAAAEAAGLLDLLGADQITHFEQRLAEENRKFAKEQ-VQGTVEQRQQRRVKRNVERLEEWFGSLSDAQLERVRRYSARAPFSADLRERDRKRRQAELLAMLRAREAKQRLARWAGAWDSGRERAYAEAARATLAEYFDLLLDLDRMLTLEQREHAAMRLKRYASLSESLA 274          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A1F4F5F6_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F5F6_9PROT)

HSP 1 Score: 256 bits (653), Expect = 8.590e-79
Identity = 134/272 (49.26%), Postives = 181/272 (66.54%), Query Frame = 3
Query:  576 RMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            R+ +A  A +  SGC+ LQ+ Y NAD L++WR   Y   +G +  +LE  +  FLAWHR   LP+Y+ +A+   +R+ARG+S+ DLVWGYD F    R+SL A A   A LLD L+  QV R   R  ++NR+ A+++ LA  P ERR +R +R +ERLE W G+LSEAQA+RVR YS RAPL DELRDR R+R Q    +M RAR+ +++L  WA  WD +R+PAY A  + +L EYF ML++LDR LS EQR +AV R R FA DF++L 
Sbjct:    6 RLALAAAAAWLASGCSTLQITYENADLLLRWRLTSYLELQGAEAEQLEGGIASFLAWHRADALPQYARVADEAGERVARGISRDDLVWGYDIFLAQARESLRAAADRIAPLLDRLTPEQVARVERRFAEDNREFAQEF-LAGTPGERRKRRLQRTVERLEGWVGSLSEAQAERVRRYSERAPLVDELRDRYRRRRQAGFVSMLRAREVQRRLTDWAARWDSDREPAYAAASRAHLEEYFSMLLELDRMLSAEQRAKAVARFRSFAEDFTSLA 276          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A522VTD5_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A522VTD5_9PROT)

HSP 1 Score: 243 bits (620), Expect = 5.230e-74
Identity = 128/274 (46.72%), Postives = 174/274 (63.50%), Query Frame = 3
Query:  570 VRRMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            +RR+ + L AL  L+GC+A +  Y +AD  ++W+ G+Y    G Q  EL+ R+  FLAWHR   LP+Y+  A     R ARG+S+ADLVWGYDSFQ+ +R ++ A A E+A LLD L   Q+    +R  ++NR  A++    D   ERR +RT RNLERLE W G LS+AQ +RVR YS RAPL   +RDR+R+R+Q E   + RAR+A Q+L  WA  WD+ R+ A+ A  + NL E F ML+DL+RTL+  QRE A  R   +A DF  L 
Sbjct:    1 MRRLALVLAALALLAGCSATRFAYEHADVFLRWQTGRYLDVHGAQSEELDARIAAFLAWHRAKALPQYAQFAREAEQRFARGISRADLVWGYDSFQSNIRAAMRAAAEESAPLLDRLGPEQIEHLRQRFAEDNRKFAREQLEGDE-GERRKRRTGRNLERLEGWLGGLSDAQVERVRRYSERAPLVGAMRDRERRRLQAEFLDLLRAREAVQRLPDWAQRWDRGREAAFVAAHRANLDELFAMLLDLERTLTLAQRESARARFLDYAADFERLA 273          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A521YPW4_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YPW4_9PROT)

HSP 1 Score: 236 bits (603), Expect = 2.560e-71
Identity = 130/274 (47.45%), Postives = 170/274 (62.04%), Query Frame = 3
Query:  570 VRRMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            V ++ +AL A   L  CTAL++ Y NADT + WR+G Y   + ++  EL  R+  F  WHR  ELP+Y+ +A+  A RL  G+S+ DLVWGYDS     RQSL   AG  A LLD L+  QV    +   ++NR  A++  L     ERR +R ++  ERLEDW G L+ AQ +RVR YS RAPL DELRDRDRKR+Q E+  M R R A+Q+L   A  WD+ RDPAY A  +   +EYF +L+DLDRTL+ EQR RA+  L  +A DF  L 
Sbjct:    4 VPKVTLALAAACMLVACTALRVAYENADTYLHWRSGSYLDLDRKESQELAERIDAFFTWHRAQELPQYARIADEAAQRLDDGLSREDLVWGYDSLVAHARQSLRVAAGRIAPLLDGLTPQQVAHLEKGFAEDNRKFAREN-LRGSEKERRKRRAKKVEERLEDWVGNLTHAQVERVRQYSERAPLYDELRDRDRKRLQAEVLEMVRQRAAQQRLADLAAHWDRGRDPAYAAASEKARQEYFALLLDLDRTLTREQRVRAIANLERYAEDFKVLA 276          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A1F4E5E7_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 TaxID=1797503 RepID=A0A1F4E5E7_9PROT)

HSP 1 Score: 236 bits (602), Expect = 2.640e-71
Identity = 129/272 (47.43%), Postives = 174/272 (63.97%), Query Frame = 3
Query:  576 RMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            R+  +L+AL  L+GC+A +L Y++AD L++WRA +Y    G Q  EL+ RV  FLAWHR   LP Y+  A     RLAR +S+ADLVW YDS  T +R ++ A A E+A LLD L   Q+    +R   +NR  AK+    D   ERR +R +RN+ERLE+W G LS+AQ +RVR YS RAPL   +RDR+R+R+Q E  AM RAR+A ++L  WA  W+++R+ A+ A  + N    F +L+DLDR L+P QRE A  RLR FA DF  L 
Sbjct:    3 RLWRSLLALALLAGCSATRLAYDHADLLLRWRAERYLDVHGAQSEELDARVAAFLAWHRAHALPLYARFAREAESRLARELSRADLVWSYDSLHTHIRAAMRAAAEESAPLLDRLGPEQIEHVQQRFADDNRKFAKEQLEGDD-GERRKRRVKRNVERLEEWLGGLSDAQVERVRQYSERAPLVGAMRDRERRRLQAEFLAMLRAREAGKRLADWAEHWERHREAAFVAAHRANRDALFDLLLDLDRMLTPAQRESAQARLREFAVDFERLA 273          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A0S8BCT3_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8BCT3_9PROT)

HSP 1 Score: 233 bits (593), Expect = 7.460e-70
Identity = 126/276 (45.65%), Postives = 173/276 (62.68%), Query Frame = 3
Query:  576 RMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALVAAAG 1403
            R ++A +AL AL+GC+A Q+ Y+N  TL++WRA  Y    G Q   L++R+++FLAWHR   LP+Y+ALA   A R+ RG+++ADL WGYD+F+  L + L A A E A +LD L+  Q+    +R+E++N   A +    D  A RR +R  RN+ RLE+WFGAL+  Q D VR Y+  APL   LR +DR+R Q EL  + R R A+++LV WA  WD+ R PAY    + +L  YF ML+ +DRTLS EQR     R R FA DF  L  A G
Sbjct:    5 RDVLAGLALLALAGCSATQVVYDNGATLLRWRATSYLDVHGAQSKALDQRIEKFLAWHRSAALPKYAALAESCARRVERGLTRADLEWGYDAFRAELDEGLRAAARELAPILDGLTPEQIAHLAQRIEEDNETFAHEQLDGDE-AGRRRRRMERNVTRLEEWFGALTATQRDAVRRYTESAPLVGALRAQDRRRRQAELLTILRTRSAQRRLVDWAAGWDRGRAPAYAKASRVHLEAYFDMLLAIDRTLSAEQRAATATRFRRFAQDFEQLARADG 279          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A1F4EH04_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4EH04_9PROT)

HSP 1 Score: 232 bits (591), Expect = 1.580e-69
Identity = 128/277 (46.21%), Postives = 176/277 (63.54%), Query Frame = 3
Query:  570 VRRMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALVAAA 1400
            V ++ +ALVA + L+GCTAL++ Y NADT + WR+G Y   + ++  EL  R+  F AWHR   LP+Y+ +A+  A RL  G+S+ DLVWGYDS     RQSL   A   A LLD L+  Q+    +   ++NR  A++  L     ERR +R +R  ERLEDW G L++AQ +RV+ YS RAPL DELR+RDRKR+Q E+  M R R+A ++L   A  W++ RDPAY A  +   +EYF +L+DLDRTL+ EQR RA+  L  +A DF  L + A
Sbjct:    4 VLKVTLALVAAWMLAGCTALRVAYENADTYLYWRSGAYLDLDRKESQELAERIDAFFAWHRVQALPQYARVADEAAKRLDDGLSREDLVWGYDSLVAHARQSLRVAAERIAPLLDRLTPQQMAHLEKGFAEDNRKFAREN-LRGGEKERRRRRAKRVEERLEDWVGNLTQAQVERVKQYSERAPLYDELRERDRKRLQAEVLQMVRLREAHKRLPELAARWERGRDPAYAAAAEAARQEYFALLLDLDRTLTHEQRVRAIAHLERYAEDFKILASRA 279          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A537AM72_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537AM72_9PROT)

HSP 1 Score: 231 bits (589), Expect = 1.840e-69
Identity = 123/261 (47.13%), Postives = 170/261 (65.13%), Query Frame = 3
Query:  609 LSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            LSGC+ ++L Y+NA+T ++WRA  Y  FEG    EL+ R+  F+AWHR   LP+Y+ +A+    R  R +  ADLVWGYDS     R+SL A A + A LLD L+  Q+     RL ++NR   ++  L     ERR +RT RN+ERLEDW G LS+AQ +RV+ YS RAPL D+LRDRD KR+Q E  A+ RA++A+++L  WA  +D+ R+PAY A  + + +EYF M ++LDR+LS +QR RA   LR +A DF  L 
Sbjct:    6 LSGCSTVRLVYDNAETYLRWRAALYLDFEGAMAEELDERIAAFMAWHRAQALPKYAQIADEATRRFERRLQPADLVWGYDSIIAQARESLRAAAVQGAPLLDQLTPQQITHLERRLGEDNRRFQREN-LRGSERERRRRRTERNVERLEDWVGRLSQAQLERVKQYSERAPLLDDLRDRDHKRIQAEFLAIVRAKEAKKRLPDWAANYDRGREPAYVAAVEASRKEYFAMALELDRSLSAQQRARAAGELRRYADDFRTLA 265          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A537EF21_9PROT (Uncharacterized protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537EF21_9PROT)

HSP 1 Score: 231 bits (588), Expect = 4.420e-69
Identity = 131/272 (48.16%), Postives = 169/272 (62.13%), Query Frame = 3
Query:  576 RMLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALV 1391
            R+   LV L  L+GC+A +L Y++ADT ++WRAG Y    GEQ  EL+ R+  F  WHR T LP+Y+ L    A RL  G+S+ D+VWGYDS     R+ L A A   A +LD LS  QV R +E+   E+             AERR +R  R +ERLEDW G LS+AQ +RVR +S RAPL  E+RDRDRKR+Q EL AM RAR+A+++L   A  +D  RDPAY A  +   +EYF +L+DLDRTLS EQR  AV   R +A DF+ L 
Sbjct:    6 RLSAILVTLSLLAGCSATRLAYDHADTWLRWRAGNYLDVHGEQAEELDERIDAFHDWHRATALPKYARLCEEAARRLGGGLSREDIVWGYDSLMAQAREGLRAAAERIAPMLDRLSPEQV-RHMEKRFAEDXXXXXXXXXXGSEAERRKRRATRTVERLEDWVGRLSKAQIERVRQFSERAPLYYEMRDRDRKRLQGELLAMVRAREAQKRLPERAANFDHGRDPAYAAASEAARQEYFALLLDLDRTLSAEQRAEAVATFRRYADDFTLLA 276          
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Match: A0A1F4CYF2_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CYF2_9PROT)

HSP 1 Score: 227 bits (578), Expect = 9.690e-68
Identity = 128/274 (46.72%), Postives = 166/274 (60.58%), Query Frame = 3
Query:  579 MLVALVALFA--LSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRVQRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSLVAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKRTRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTAMFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSPEQRERAVRRLRGFAGDFSALVA 1394
            M  A   LFA  L GC+ ++  Y+NAD  ++WRAG Y    GEQ  EL+  +Q FL WHR   LP+Y+ LA+  A RL  G+S  DLVWGYDS     R+SL   A   A LL+ L   Q+    +RL  +NR  AK + L  P  +RR +R  R +ERLEDW G LS+AQ  RVR YS   PL  E+RDRD +R+Q  L  + RAR+A ++L  + + W++ RDPAY      + RE F ML++LDRTLSPEQRERA   LR +A +F  L A
Sbjct:    1 MRAAAALLFACLLCGCSMVRFAYDNADAYLRWRAGNYLDVHGEQADELDASIQAFLDWHRAQALPQYARLADEAAQRLGDGLSPQDLVWGYDSLVMQARESLRTAAERIAPLLERLDDEQIAHLEQRLADDNRRFAKQF-LRGPERKRRERRAERIVERLEDWVGRLSQAQRARVRRYSESVPLLPEMRDRDNRRLQAGLLELVRAREAEERLAQFVLDWERGRDPAYAQAVAASRRELFTMLLELDRTLSPEQRERASAHLRRYAAEFRLLAA 273          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17676.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4FFR9_9PROT6.230e-7948.90Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A1F4F5F6_9PROT8.590e-7949.26Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A522VTD5_9PROT5.230e-7446.72Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A521YPW4_9PROT2.560e-7147.45Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4E5E7_9PROT2.640e-7147.43Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A0S8BCT3_9PROT7.460e-7045.65Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A1F4EH04_9PROT1.580e-6946.21Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537AM72_9PROT1.840e-6947.13Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A537EF21_9PROT4.420e-6948.16Uncharacterized protein n=3 Tax=Betaproteobacteria... [more]
A0A1F4CYF2_9PROT9.690e-6846.72Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17676contigP-wetherbeei_contig17676:1..1409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1000565.METUNv1_02789
Model size1409
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.36e-26
EggNOG OGs2DMIH@1|root,32RT1@2|Bacteria,1RDKU@1224|Proteobacteria,2VR1F@28216|Betaproteobacteria,2KZ4T@206389|Rhodocyclales
Cds size831
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.0033-UTR-P-wetherbeei_contig17676:0..5781683186123.0033-UTR-P-wetherbeei_contig17676:0..578Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17676 1..578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186123.0144057-CDS-P-wetherbeei_contig17676:578..14091683186123.0144057-CDS-P-wetherbeei_contig17676:578..1409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17676 579..1409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17676.1.1prot_P-wetherbeei_contig17676.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17676 579..1409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17676.1.1

>prot_P-wetherbeei_contig17676.1.1 ID=prot_P-wetherbeei_contig17676.1.1|Name=mRNA_P-wetherbeei_contig17676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=277bp
MLVALVALFALSGCTALQLGYNNADTLIQWRAGKYFGFEGEQKAELERRV
QRFLAWHRKTELPRYSALANGLADRLARGVSQADLVWGYDSFQTLLRQSL
VAGAGEAAELLDVLSAAQVGRFVERLEKENRDHAKDYALADPPAERRAKR
TRRNLERLEDWFGALSEAQADRVRLYSARAPLDDELRDRDRKRMQRELTA
MFRARDARQKLVPWAMAWDQNRDPAYEAMRKDNLREYFGMLMDLDRTLSP
EQRERAVRRLRGFAGDFSALVAAAGD*
back to top

mRNA from alignment at P-wetherbeei_contig17676:1..1409+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17676.1.1 ID=mRNA_P-wetherbeei_contig17676.1.1|Name=mRNA_P-wetherbeei_contig17676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1409bp|location=Sequence derived from alignment at P-wetherbeei_contig17676:1..1409+ (Phaeothamnion wetherbeei SAG_119_79)
CCCGGCGCGGCAACGCTCGAGTTCTATTACGCGATCGTGGCGACGGGTCC CCTGTCGCCGAGGCTCGCCGCGCTCGCGCAGGGAGATCGCGTCTTCCTGT CGGCCAGCCCGGCAGGATTCCTCGTGCTCTCCGAGGTGCCCGATGCGGAC GTCCTTTGGCTGGTGTCGACGGGAACCGGCATCGGGCCTTTCCTGTCGAT CCTGGGGACCGAAGTTCCCTGGAAGCGGTTTCGCCGGGTGGTGCTGGTGC ATGCCGCGCGGCATCCCGCGGAGCTGGTGTATGCGCAAGCCATCGCCGCC ATCCGCGATGCGCATCCGGCACAGTTCTCGTACGTCGGGGTGACGAGCGC GGCGCCGGTCGAAGGCGCACTGCATGGGCGCATCCCCGCGCTGATCCGTG ACGGGTCGCTCGAGGCTCACGCAGGCTGTGCCCTTTCGGCCGAGGCCTCG CAAGTCATGCTGTGTGGCAATCCCGACATGGTCAAGGACGCGACCGAAGC GCTCGCCGGGCGCGGCATGAAGAAGCACCGCCGGCGCAGTCCCGGCCAGA TCACGGTGGAGAACTACTGGTGAGGCGGATGCTGGTGGCGCTCGTCGCGC TCTTCGCACTGTCCGGGTGCACGGCCCTGCAGCTGGGCTACAACAATGCC GACACGCTGATCCAATGGCGCGCCGGCAAGTACTTCGGCTTCGAAGGCGA GCAGAAGGCGGAACTGGAGCGCCGGGTGCAGCGCTTCCTCGCATGGCACC GCAAGACGGAGCTGCCGCGTTACTCCGCCCTGGCCAATGGGCTGGCCGAT CGCCTCGCGCGCGGTGTGTCGCAGGCGGATCTGGTTTGGGGTTACGATTC GTTTCAAACGCTGCTGCGCCAGAGCCTGGTGGCGGGCGCCGGGGAGGCGG CCGAACTGCTCGATGTCTTGTCCGCGGCCCAGGTGGGGCGGTTCGTGGAG CGTCTGGAAAAGGAGAACCGGGACCACGCGAAGGACTATGCCCTGGCGGA CCCGCCGGCGGAGCGCCGGGCGAAGCGCACACGGCGAAACCTCGAGCGTC TTGAAGACTGGTTCGGTGCGCTGAGCGAGGCGCAGGCCGACCGGGTCAGG CTCTACAGCGCGCGAGCGCCGCTCGACGATGAGTTGCGCGACCGCGACAG GAAGCGCATGCAGCGCGAGCTGACCGCAATGTTCCGGGCCCGCGATGCGC GGCAGAAGCTGGTTCCCTGGGCGATGGCCTGGGACCAGAACCGTGATCCG GCGTACGAAGCCATGCGCAAGGACAACCTGCGGGAGTATTTCGGCATGCT GATGGACCTGGACAGGACGCTGAGCCCCGAGCAGCGCGAGCGCGCCGTGC GGCGGCTGCGCGGCTTCGCTGGCGACTTCTCGGCCCTGGTGGCCGCGGCC GGGGACTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig17676:1..1409+

>mRNA_P-wetherbeei_contig17676.1.1 ID=mRNA_P-wetherbeei_contig17676.1.1|Name=mRNA_P-wetherbeei_contig17676.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=831bp|location=Sequence derived from alignment at P-wetherbeei_contig17676:1..1409+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGTGGCGCTCGTCGCGCTCTTCGCACTGTCCGGGTGCACGGCCCT
GCAGCTGGGCTACAACAATGCCGACACGCTGATCCAATGGCGCGCCGGCA
AGTACTTCGGCTTCGAAGGCGAGCAGAAGGCGGAACTGGAGCGCCGGGTG
CAGCGCTTCCTCGCATGGCACCGCAAGACGGAGCTGCCGCGTTACTCCGC
CCTGGCCAATGGGCTGGCCGATCGCCTCGCGCGCGGTGTGTCGCAGGCGG
ATCTGGTTTGGGGTTACGATTCGTTTCAAACGCTGCTGCGCCAGAGCCTG
GTGGCGGGCGCCGGGGAGGCGGCCGAACTGCTCGATGTCTTGTCCGCGGC
CCAGGTGGGGCGGTTCGTGGAGCGTCTGGAAAAGGAGAACCGGGACCACG
CGAAGGACTATGCCCTGGCGGACCCGCCGGCGGAGCGCCGGGCGAAGCGC
ACACGGCGAAACCTCGAGCGTCTTGAAGACTGGTTCGGTGCGCTGAGCGA
GGCGCAGGCCGACCGGGTCAGGCTCTACAGCGCGCGAGCGCCGCTCGACG
ATGAGTTGCGCGACCGCGACAGGAAGCGCATGCAGCGCGAGCTGACCGCA
ATGTTCCGGGCCCGCGATGCGCGGCAGAAGCTGGTTCCCTGGGCGATGGC
CTGGGACCAGAACCGTGATCCGGCGTACGAAGCCATGCGCAAGGACAACC
TGCGGGAGTATTTCGGCATGCTGATGGACCTGGACAGGACGCTGAGCCCC
GAGCAGCGCGAGCGCGCCGTGCGGCGGCTGCGCGGCTTCGCTGGCGACTT
CTCGGCCCTGGTGGCCGCGGCCGGGGACTGA
back to top