mRNA_P-wetherbeei_contig17666.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17666.1.1
Unique NamemRNA_P-wetherbeei_contig17666.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A7C4TR50_9HYPH (50S ribosomal protein L1 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TR50_9HYPH)

HSP 1 Score: 384 bits (986), Expect = 1.730e-133
Identity = 195/234 (83.33%), Postives = 217/234 (92.74%), Query Frame = 1
Query:    1 MAKLGKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSGQQ 702
            M K+GKR++AAR G+DR KAY LDEAVKLVKSRAKAKFDETV+IA+NLGVDPKHADQMVRGVC LPNGSGRT+RVAVFA+G KA+EAKAAGAD+VGAEDLVE V KGTINFDRCIATPDMM LVGRLGKVLGPRGLMPNPRVGTVTMDVA AVKGAKGGAVEFR+EK+GIVHAGVGKASF E  LVENIRAFVDAV++A+P+GAKG +I+KV+IKSTQGPG+KVD G++  GQQ
Sbjct:    1 MGKIGKRMRAAREGIDRAKAYSLDEAVKLVKSRAKAKFDETVDIAINLGVDPKHADQMVRGVCNLPNGSGRTLRVAVFARGAKAEEAKAAGADVVGAEDLVEQVQKGTINFDRCIATPDMMALVGRLGKVLGPRGLMPNPRVGTVTMDVASAVKGAKGGAVEFRIEKAGIVHAGVGKASFPESKLVENIRAFVDAVNKARPSGAKGTFIKKVAIKSTQGPGVKVDQGSILGGQQ 234          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: UPI000374294C (50S ribosomal protein L1 n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000374294C)

HSP 1 Score: 373 bits (958), Expect = 6.010e-129
Identity = 188/225 (83.56%), Postives = 212/225 (94.22%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTL 687
            GKR  A R G+DR KAYG+DEAV+L+K+RAKAKFDETVE+AMNLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KA+EAKAAGAD+VGAEDLV++VSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVA AVKGAKGG+VEFRVEK+GIVHAGVGKASFTE+ALVENI+AFV+AVS+AKPAG+KG YI+KVS+ ST GPGLK++ G++
Sbjct:   23 GKRNAAVREGIDRNKAYGVDEAVRLIKARAKAKFDETVEVAMNLGVDPKHADQMVRGVCNLPNGSGRTSRVAVFARGPKAEEAKAAGADVVGAEDLVDIVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVASAVKGAKGGSVEFRVEKAGIVHAGVGKASFTEQALVENIKAFVEAVSKAKPAGSKGTYIKKVSLSSTMGPGLKIETGSV 247          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: V5SFP9_9HYPH (50S ribosomal protein L1 n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SFP9_9HYPH)

HSP 1 Score: 372 bits (955), Expect = 1.490e-128
Identity = 188/225 (83.56%), Postives = 207/225 (92.00%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTL 687
            GKR    R G+D  KAY +DEAV+LVK RAKAKFDETVE+AMNLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KADEAKAAGAD+VGAEDLVE+VSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDV GAVKGAKGG+VEFRVEK+GIVHAG+GKASFTE ALVENI+AFVDAV++AKPAG+KG YI+KVS+ ST GPG++VD GT+
Sbjct:   19 GKRNAEVRKGIDANKAYAIDEAVRLVKERAKAKFDETVEVAMNLGVDPKHADQMVRGVCNLPNGSGRTARVAVFARGPKADEAKAAGADVVGAEDLVEIVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVTGAVKGAKGGSVEFRVEKAGIVHAGIGKASFTEDALVENIKAFVDAVAKAKPAGSKGTYIKKVSVSSTMGPGVRVDTGTV 243          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A2W4KX75_9PROT (50S ribosomal protein L1 n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KX75_9PROT)

HSP 1 Score: 368 bits (944), Expect = 4.020e-127
Identity = 188/232 (81.03%), Postives = 209/232 (90.09%), Query Frame = 1
Query:    1 MAKLGKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSG 696
            MAK+GKRI+ AR+ VDR KAY LDEA+KLVK  A  KFDETV+IA+NLGVDPKHADQ+VRGVC LPNGSGRTVRVAVFA+G KADEAKAAGADIVGAEDL E V +G INFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVK AKGGA+EFRVEK+GIVHAGVGK SF+E+ L ENIRAF+DAV+RAKP+GAKG Y++KV+I ST GPG+KVDH T+ SG
Sbjct:    1 MAKVGKRIRDARAKVDRNKAYPLDEAIKLVKETASVKFDETVDIAVNLGVDPKHADQVVRGVCQLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLFEQVQRGEINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKAAKGGAIEFRVEKAGIVHAGVGKVSFSEQQLAENIRAFIDAVNRAKPSGAKGTYLKKVAISSTMGPGIKVDHNTILSG 232          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A537S1Z2_9PROT (50S ribosomal protein L1 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A537S1Z2_9PROT)

HSP 1 Score: 368 bits (944), Expect = 4.310e-127
Identity = 184/229 (80.35%), Postives = 210/229 (91.70%), Query Frame = 1
Query:    1 MAKLGKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTL 687
            M+K+GKR+K AR GVDR KAY +DEA+K+VK RAKAKFDETVE++MNLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KA+EAKAAGAD+VGAEDLVE VSKGTINFDRCIATPD+MGLVGRLGKVLGPRGLMPNPRVGTVTMDV  AVKGAKGGAVEFRVEK+GIV AGVGKASF++K L ENI+AFVDAV ++KPAGAKG Y++K+S+ STQG G+K+D G++
Sbjct:    1 MSKIGKRLKGAREGVDREKAYAIDEAIKVVKERAKAKFDETVEVSMNLGVDPKHADQMVRGVCNLPNGSGRTQRVAVFARGAKAEEAKAAGADVVGAEDLVEQVSKGTINFDRCIATPDLMGLVGRLGKVLGPRGLMPNPRVGTVTMDVTSAVKGAKGGAVEFRVEKAGIVQAGVGKASFSDKQLAENIKAFVDAVVKSKPAGAKGTYVKKISVSSTQGVGVKIDAGSV 229          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A258KX66_9HYPH (50S ribosomal protein L1 n=1 Tax=Hyphomicrobium sp. 32-62-53 TaxID=1970390 RepID=A0A258KX66_9HYPH)

HSP 1 Score: 368 bits (945), Expect = 4.980e-127
Identity = 188/232 (81.03%), Postives = 209/232 (90.09%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSGQQSN 708
            GKR  A   GVDR KAYG+DEAVKL+K RAKAKFDET+EI+MNLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KA+EAKAAGADIVGAEDLVE+VSKG INFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVT+DV GAV GAKGG+VEFRVEKSGI+HAGVGKASF EKALVENI+AFVDAV +AKP G+KG Y++KVS+ ST GPG+KV+  ++SSG  +N
Sbjct:   19 GKRAFAISKGVDRTKAYGVDEAVKLIKERAKAKFDETIEISMNLGVDPKHADQMVRGVCNLPNGSGRTARVAVFARGAKAEEAKAAGADIVGAEDLVEIVSKGQINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTVDVVGAVNGAKGGSVEFRVEKSGIIHAGVGKASFGEKALVENIKAFVDAVVKAKPPGSKGTYLKKVSLSSTMGPGVKVETSSVSSGPAAN 250          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: UPI0009320474 (50S ribosomal protein L1 n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009320474)

HSP 1 Score: 367 bits (942), Expect = 1.640e-126
Identity = 184/225 (81.78%), Postives = 207/225 (92.00%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTL 687
            GKR    + G+DR KAYG++EAV+L+KSRAKAKFDET+E+AMNLGVDPKHADQ+VRGVC LPNGSGRT RVAVFA+G KA+EAKAAGAD+VGAEDLVE VSKG INFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDV  A+KGAKGG+VEFRVEK+GIVHAG+GKASFTE+ALVENI+AFVDAVS+ KPAGAKG YI+KVS+ ST GPG+KVD GT+
Sbjct:   23 GKRNAEVQKGIDRNKAYGVEEAVRLIKSRAKAKFDETIEVAMNLGVDPKHADQVVRGVCNLPNGSGRTARVAVFARGPKAEEAKAAGADVVGAEDLVESVSKGVINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVTSAIKGAKGGSVEFRVEKAGIVHAGIGKASFTEQALVENIKAFVDAVSKGKPAGAKGTYIKKVSLSSTMGPGVKVDTGTV 247          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A2S5P4P6_HYPSQ (50S ribosomal protein L1 n=2 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5P4P6_HYPSQ)

HSP 1 Score: 365 bits (936), Expect = 1.210e-125
Identity = 187/232 (80.60%), Postives = 209/232 (90.09%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSGQQSN 708
            GKR  A   G+DR KAY +DEAVKL+K RAK+KFDETVEIAMNLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KA+EAKAAGAD+VGAEDLVE+VSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDV GAVKGAKGG+VEFRVEKSGIVHAGVGKASFTE ALVENI+AFVDAV +A+P G+KG Y++KVS+ ST GPG K++  +++SG  +N
Sbjct:   20 GKRQAAISVGIDRNKAYLVDEAVKLIKERAKSKFDETVEIAMNLGVDPKHADQMVRGVCNLPNGSGRTSRVAVFARGAKAEEAKAAGADVVGAEDLVEIVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVVGAVKGAKGGSVEFRVEKSGIVHAGVGKASFTESALVENIKAFVDAVVKARPQGSKGTYLKKVSLSSTMGPGFKLETSSVTSGAAAN 251          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A1I7ND19_9HYPH (50S ribosomal protein L1 n=11 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7ND19_9HYPH)

HSP 1 Score: 364 bits (935), Expect = 1.600e-125
Identity = 183/228 (80.26%), Postives = 210/228 (92.11%), Query Frame = 1
Query:   13 GKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSG 696
            GKR++A + G+   K+YG+DEAVK++K RAKAKFDET+E+A+NLGVDPKHADQMVRGVC LPNGSGRT RVAVFA+G KA+EAKAAGADIVGAEDLVE+VSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDV  AVKGAKGG+VEFRVEK+GIVHAGVGKASFTE+ALV+NI+AFVDAV +AKP G+KG Y++KVS+ ST GPGLK+D  T++SG
Sbjct:   19 GKRMEAIKQGLPAGKSYGVDEAVKIIKERAKAKFDETIEVAVNLGVDPKHADQMVRGVCNLPNGSGRTARVAVFARGAKAEEAKAAGADIVGAEDLVEIVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVVTAVKGAKGGSVEFRVEKAGIVHAGVGKASFTEEALVQNIKAFVDAVVKAKPTGSKGTYLKKVSLSSTMGPGLKLDTATVASG 246          
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Match: A0A2V3U819_9HYPH (50S ribosomal protein L1 n=3 Tax=Chelatococcus TaxID=28209 RepID=A0A2V3U819_9HYPH)

HSP 1 Score: 361 bits (927), Expect = 1.450e-124
Identity = 182/229 (79.48%), Postives = 207/229 (90.39%), Query Frame = 1
Query:    1 MAKLGKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGVDPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDLVELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVAGAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAKPAGAKGNYIRKVSIKSTQGPGLKVDHGTL 687
            MAK+ KRI A R G+DR+K YGLDEAVK+VK RAKAKFDET+E+AMNLGVDP+HADQMVRGVC LPNGSGRTVRVAVFA+G KADEAKAAGADIVGAEDL+E+V  GTINFDRCIATPD+M LVGRLGKVLGPRGLMPNP+VGTVTMDV GAV  AKGGAVEFRVEK+GIVHAG+GKASF E  LVENI+AFVDAVS+A+P+GAKG Y+++V+I ST GPG+KVD  ++
Sbjct:    1 MAKVAKRITALRDGIDRVKLYGLDEAVKMVKERAKAKFDETIEVAMNLGVDPRHADQMVRGVCNLPNGSGRTVRVAVFARGAKADEAKAAGADIVGAEDLLEIVQGGTINFDRCIATPDLMPLVGRLGKVLGPRGLMPNPKVGTVTMDVKGAVAAAKGGAVEFRVEKAGIVHAGIGKASFDEGKLVENIKAFVDAVSKARPSGAKGTYVQRVAISSTMGPGVKVDPASV 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17666.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TR50_9HYPH1.730e-13383.3350S ribosomal protein L1 n=1 Tax=Hyphomicrobiales ... [more]
UPI000374294C6.010e-12983.5650S ribosomal protein L1 n=1 Tax=Hyphomicrobium za... [more]
V5SFP9_9HYPH1.490e-12883.5650S ribosomal protein L1 n=1 Tax=Hyphomicrobium ni... [more]
A0A2W4KX75_9PROT4.020e-12781.0350S ribosomal protein L1 n=1 Tax=Proteobacteria ba... [more]
A0A537S1Z2_9PROT4.310e-12780.3550S ribosomal protein L1 n=3 Tax=Alphaproteobacter... [more]
A0A258KX66_9HYPH4.980e-12781.0350S ribosomal protein L1 n=1 Tax=Hyphomicrobium sp... [more]
UPI00093204741.640e-12681.7850S ribosomal protein L1 n=1 Tax=Hyphomicrobium sp... [more]
A0A2S5P4P6_HYPSQ1.210e-12580.6050S ribosomal protein L1 n=2 Tax=Hyphomicrobium sp... [more]
A0A1I7ND19_9HYPH1.600e-12580.2650S ribosomal protein L1 n=11 Tax=Hyphomicrobium T... [more]
A0A2V3U819_9HYPH1.450e-12479.4850S ribosomal protein L1 n=3 Tax=Chelatococcus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17666contigP-wetherbeei_contig17666:286..996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1267005.KB911261_gene2262
Preferred namerplA
PFAMsRibosomal_L1
Model size711
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02863
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000470,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0022625,GO:0022626,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue9.86e-130
EggNOG OGsCOG0081@1|root,COG0081@2|Bacteria,1MUE6@1224|Proteobacteria,2TRXP@28211|Alphaproteobacteria,3N66T@45401|Hyphomicrobiaceae
DescriptionBinds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release
Cds size711
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186122.5881062-CDS-P-wetherbeei_contig17666:285..9961683186122.5881062-CDS-P-wetherbeei_contig17666:285..996Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17666 286..996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17666.1.1prot_P-wetherbeei_contig17666.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17666 286..996 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17666.1.1

>prot_P-wetherbeei_contig17666.1.1 ID=prot_P-wetherbeei_contig17666.1.1|Name=mRNA_P-wetherbeei_contig17666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=237bp
MAKLGKRIKAARSGVDRLKAYGLDEAVKLVKSRAKAKFDETVEIAMNLGV
DPKHADQMVRGVCTLPNGSGRTVRVAVFAKGGKADEAKAAGADIVGAEDL
VELVSKGTINFDRCIATPDMMGLVGRLGKVLGPRGLMPNPRVGTVTMDVA
GAVKGAKGGAVEFRVEKSGIVHAGVGKASFTEKALVENIRAFVDAVSRAK
PAGAKGNYIRKVSIKSTQGPGLKVDHGTLSSGQQSN*
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mRNA from alignment at P-wetherbeei_contig17666:286..996-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17666.1.1 ID=mRNA_P-wetherbeei_contig17666.1.1|Name=mRNA_P-wetherbeei_contig17666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17666:286..996- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAACTCGGAAAACGTATCAAGGCTGCACGTTCAGGCGTCGACCG GCTGAAGGCCTATGGTCTGGATGAGGCGGTCAAGCTCGTGAAGTCGCGCG CCAAGGCGAAGTTCGACGAGACCGTCGAGATCGCCATGAACCTCGGCGTC GATCCCAAGCACGCCGACCAGATGGTGCGGGGCGTCTGCACGCTGCCGAA CGGCTCGGGCCGCACGGTCCGCGTGGCGGTTTTCGCAAAAGGCGGCAAGG CCGACGAAGCGAAGGCGGCAGGTGCCGACATCGTCGGCGCGGAGGATCTG GTGGAACTTGTTTCTAAGGGAACGATCAATTTCGACCGCTGCATCGCGAC GCCTGACATGATGGGTCTCGTTGGCCGTTTGGGCAAAGTGCTCGGCCCGC GTGGACTTATGCCCAACCCCCGTGTCGGCACCGTGACAATGGACGTTGCG GGAGCGGTCAAGGGTGCCAAGGGCGGCGCCGTCGAGTTCCGCGTCGAGAA GTCGGGGATCGTGCATGCCGGCGTCGGCAAGGCGAGCTTCACGGAGAAGG CGCTGGTCGAGAACATCAGGGCGTTCGTCGATGCCGTCAGCCGGGCAAAG CCGGCGGGTGCGAAGGGCAACTACATCAGGAAGGTCTCGATCAAGAGCAC GCAGGGGCCAGGCCTCAAAGTCGATCATGGAACGCTCTCGAGCGGCCAGC AGTCGAACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17666:286..996-

>mRNA_P-wetherbeei_contig17666.1.1 ID=mRNA_P-wetherbeei_contig17666.1.1|Name=mRNA_P-wetherbeei_contig17666.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=711bp|location=Sequence derived from alignment at P-wetherbeei_contig17666:286..996- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGAAACTCGGAAAACGTATCAAGGCTGCACGTTCAGGCGTCGACCG
GCTGAAGGCCTATGGTCTGGATGAGGCGGTCAAGCTCGTGAAGTCGCGCG
CCAAGGCGAAGTTCGACGAGACCGTCGAGATCGCCATGAACCTCGGCGTC
GATCCCAAGCACGCCGACCAGATGGTGCGGGGCGTCTGCACGCTGCCGAA
CGGCTCGGGCCGCACGGTCCGCGTGGCGGTTTTCGCAAAAGGCGGCAAGG
CCGACGAAGCGAAGGCGGCAGGTGCCGACATCGTCGGCGCGGAGGATCTG
GTGGAACTTGTTTCTAAGGGAACGATCAATTTCGACCGCTGCATCGCGAC
GCCTGACATGATGGGTCTCGTTGGCCGTTTGGGCAAAGTGCTCGGCCCGC
GTGGACTTATGCCCAACCCCCGTGTCGGCACCGTGACAATGGACGTTGCG
GGAGCGGTCAAGGGTGCCAAGGGCGGCGCCGTCGAGTTCCGCGTCGAGAA
GTCGGGGATCGTGCATGCCGGCGTCGGCAAGGCGAGCTTCACGGAGAAGG
CGCTGGTCGAGAACATCAGGGCGTTCGTCGATGCCGTCAGCCGGGCAAAG
CCGGCGGGTGCGAAGGGCAACTACATCAGGAAGGTCTCGATCAAGAGCAC
GCAGGGGCCAGGCCTCAAAGTCGATCATGGAACGCTCTCGAGCGGCCAGC
AGTCGAACTGA
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