mRNA_P-wetherbeei_contig17606.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17606.1.1
Unique NamemRNA_P-wetherbeei_contig17606.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A397AD39_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AD39_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.240e-19
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    7 LLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRMLRL---AFDD 327
            LL   +A  VTS+K SPS A+ +LG GVRD ++              +  P H V+ +YR  DM LV  V+S  DDVN+A FHP PG GF+YGTKQGRVR+ R    AFDD
Sbjct:   87 LLAETAAGGVTSVKFSPSGAYVLLGYGVRDRIQR------------INQFPLHRVTRMYRWEDMSLVSHVESDADDVNIALFHPLPGGGFLYGTKQGRVRLCRPWRGAFDD 185
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A6G0WMI1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WMI1_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.470e-19
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    7 LLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRMLRL---AFDD 327
            LL   +A  VTS+K SPS A+ +LG GVRD ++              +  P H V+ IYR  DM LV  V+S  DDVN+A FHP PGFGF+YGTKQGRVR+ R     FDD
Sbjct:  461 LLAETAAGGVTSVKFSPSGAYVLLGYGVRDRIQR------------INQFPLHRVTRIYRWEDMSLVSHVESDVDDVNIALFHPLPGFGFLYGTKQGRVRVARTWRGPFDD 559
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A485KBC9_9STRA (Aste57867_3431 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBC9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 2.510e-19
Identity = 55/111 (49.55%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    7 LLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRMLRL---AFDD 327
            LL   +A  VTS+K SPS A+ +LG GVRD ++              +  P H V+ IYR  DM LV  V+S  DDVN+A FHP PGFGF+YGTKQGRVR+ R     FDD
Sbjct:  480 LLAETAAGGVTSVKFSPSGAYVLLGYGVRDRIQR------------INQFPLHRVTRIYRWEDMSLVSHVESDVDDVNIALFHPLPGFGFLYGTKQGRVRVCRTWRGPFDD 578
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: W4GBB9_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBB9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.230e-18
Identity = 54/111 (48.65%), Postives = 67/111 (60.36%), Query Frame = 1 
Query:    7 LLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRMLRL---AFDD 327
            LL   +A  VTS+K SPS A+ +LG GVRD ++              +  P H V+ +YR  DM LV  V+S  DDVN+A FHP PG GF+YGTKQGRVR+ R    AFDD
Sbjct:  501 LLAETAAGGVTSVKFSPSGAYVLLGYGVRDRIQR------------INQFPLHRVTRMYRWEDMSLVSHVESDADDVNIALFHPLPGGGFLYGTKQGRVRLCRPWRGAFDD 599
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A7S1BVQ2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVQ2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 2.590e-18
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   22 SAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARPHPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRML 309
            +A+ VT +K SP++ F +LG GVR+           G        PHPV+ +YR   M+ V TV S +DDVN+ARFHP  G GF+YGTKQGR+R+L
Sbjct:  261 NAQGVTCVKFSPTAGFCLLGYGVRNDNN--------GVESNGEESPHPVARVYRVRGMQHVMTVLSTEDDVNIARFHPRSGEGFVYGTKQGRIRVL 348
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A7S3QDN5_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDN5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.500e-17
Identity = 51/102 (50.00%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:   19 NSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVA---GAGDPASARP-HPVSFIYRT-SDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRML 309
            + A  VT +K SPS+ F +LG GVR+  +   P+  A   G GD     P HPV+ +YR    M  V T+ S  DDVN+ARFHPE G GF+YGTKQGRVR+L
Sbjct: 1010 SKASSVTCVKFSPSAEFCLLGYGVREQRQVQVPNPAANGNGLGDGPDLLPFHPVNALYRIRGGMTQVATMLSDNDDVNIARFHPESGVGFVYGTKQGRVRVL 1111
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A024TP79_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TP79_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.690e-17
Identity = 53/111 (47.75%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:    7 LLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRMLRL---AFDD 327
            LL   +A  VTS+K SPS A+ +LG GVRD ++              +  P H V+ +YR  DM LV  V+S  DDVN+A FHP  G GF+YGTKQGRVR+ R    AFDD
Sbjct:  498 LLAETAAGGVTSVKFSPSGAYVLLGYGVRDRIQR------------INQFPLHRVTRMYRWEDMSLVSHVESDADDVNIALFHPLAGGGFLYGTKQGRVRLCRPWRGAFDD 596
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A7S2YKQ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YKQ2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.950e-17
Identity = 49/106 (46.23%), Postives = 64/106 (60.38%), Query Frame = 1 
Query:   10 LYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP---HPVSFIYRT---SDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRML 309
            L    A  VT +K SPS+ F ++G GVR+ +   A    A AG  A+      HPV+ IYR      M  + T+ S  DDVN+ARFHP+PG GF+YGTKQGRVR++
Sbjct:  451 LDAGKASAVTCVKFSPSTEFCLIGYGVREPMSSAAALNNATAGGDANVNHQLFHPVTAIYRVRGPGGMGQISTMLSRDDDVNIARFHPDPGHGFVYGTKQGRVRVV 556
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A7S3L471_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L471_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.130e-17
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 1 
Query:   10 LYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARP-HPVSFIYRT-SDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRML 309
            L ++ A  VT +K SPS+ F ++G GVR+ V     +    AG+  +  P HPV+ +YR    M+ V T+ S  DDVN+ARFHP+ G+GF+YGTKQGRVR+L
Sbjct:  733 LDSSKASAVTCVKFSPSTDFCLIGYGVREPVMENG-NTQPNAGNGNNDGPFHPVTAVYRVRGGMKQVSTMLSGDDDVNIARFHPDSGYGFVYGTKQGRVRVL 833
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BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Match: A0A7S1D7P5_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D7P5_CYCTE)

HSP 1 Score: 83.2 bits (204), Expect = 7.970e-17
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   25 AREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPASARPHPVSFIYRT-SDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRVRML 309
            A  VT +K SPS+ F +LG GVR+      P    G  D    R HPV+ +YR    M  V T+ S  DDVN+ARFHP+ G+GF+YGTKQGRVR+L
Sbjct:  203 ASAVTCVKFSPSADFCLLGYGVRE------PIATDGGED---TRFHPVTALYRVRGGMTHVSTMLSSDDDVNIARFHPDSGYGFVYGTKQGRVRVL 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17606.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397AD39_9STRA1.240e-1948.65Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A6G0WMI1_9STRA2.470e-1949.55Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KBC9_9STRA2.510e-1949.55Aste57867_3431 protein n=1 Tax=Aphanomyces stellat... [more]
W4GBB9_9STRA2.230e-1848.65Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
A0A7S1BVQ2_9STRA2.590e-1846.88Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3QDN5_9STRA1.500e-1750.00Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A024TP79_9STRA2.690e-1747.75Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S2YKQ2_9STRA4.950e-1746.23Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3L471_9STRA5.130e-1747.06Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1D7P5_CYCTE7.970e-1750.00Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17606contigP-wetherbeei_contig17606:104..770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008876102.1
Preferred nameTPL
PFAMsWD40
Model size327
Max annot lvl2759|Eukaryota
KEGG koko:K14558,ko:K14963,ko:K17985
KEGG Pathwayko03008,ko04137,ko04140,ko04934,map03008,map04137,map04140,map04934
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001101,GO:0003002,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0008150,GO:0009653,GO:0009719,GO:0009725,GO:0009733,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009867,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009933,GO:0009987,GO:0010014,GO:0010016,GO:0010033,GO:0010051,GO:0010072,GO:0010154,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0022414,GO:0023052,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0032870,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045892,GO:0045934,GO:0046983,GO:0048316,GO:0048367,GO:0048507,GO:0048508,GO:0048519,GO:0048523,GO:0048532,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0060255,GO:0061458,GO:0065007,GO:0070887,GO:0071229,GO:0071310,GO:0071395,GO:0071495,GO:0080090,GO:0090421,GO:1901700,GO:1901701,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons2
Evalue4.41e-18
EggNOG OGsKOG0266@1|root,KOG0266@2759|Eukaryota
Ec32 ortholog descriptiontransducin family protein
Ec32 orthologEc-06_004410.1
DescriptionWD repeat-containing protein
Cds size327
COG categoryB
BRITEko00000,ko00001,ko03009,ko03029,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.2442405-CDS-P-wetherbeei_contig17606:103..3071683186121.2442405-CDS-P-wetherbeei_contig17606:103..307Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17606 104..307 +
1683186121.2573867-CDS-P-wetherbeei_contig17606:647..7701683186121.2573867-CDS-P-wetherbeei_contig17606:647..770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17606 648..770 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17606.1.1prot_P-wetherbeei_contig17606.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17606 104..770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17606.1.1

>prot_P-wetherbeei_contig17606.1.1 ID=prot_P-wetherbeei_contig17606.1.1|Name=mRNA_P-wetherbeei_contig17606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MRLLYTNSAREVTSIKLSPSSAFAILGCGVRDAVRPGAPDYVAGAGDPAS
ARPHPVSFIYRTSDMRLVHTVQSVQDDVNVARFHPEPGFGFMYGTKQGRV
RMLRLAFDD
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mRNA from alignment at P-wetherbeei_contig17606:104..770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17606.1.1 ID=mRNA_P-wetherbeei_contig17606.1.1|Name=mRNA_P-wetherbeei_contig17606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=667bp|location=Sequence derived from alignment at P-wetherbeei_contig17606:104..770+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTTGCTGTACACAAACAGCGCTCGGGAGGTGACATCGATCAAGCT
GTCGCCGTCGTCGGCCTTTGCCATCCTCGGCTGCGGGGTGCGCGACGCTG
TCCGACCCGGTGCACCCGACTATGTGGCCGGGGCGGGGGACCCGGCGTCA
GCGCGGCCGCACCCGGTGTCGTTCATCTACCGTACTTCAGACATGCGCCT
TGTGGTGAGCGGTGGTGAAATGAGAGAGTTTGGGACGGAGTAAGGATAGT
GGCCCAGCAGGCTGGATCGAGCCCAAGGTCATTTTGCAGTTTAGCTGAGC
CGCTTGGCAGATTCCGTCACCCGCGCTGAAGAGACGTTGTCTTGCTTGAA
CGGGGTTCTTGTTCGAGGAAGCGCATCCGTACCCTGGCTCGCGGTGCTGC
TTGCCGCACATTCTGAGCCTTCCGCATAACGGCAGGTTTGTTCCTATATT
GTTAACCGAACTTTTCCTCAATTTTGACTTCGCTCAGTCGCCTCCCTCCT
TTTTTTCTTCTCCCGAAACAAACGCCCGAAACAAAAACAAGCAGCACACG
GTGCAGTCGGTGCAGGACGACGTCAACGTCGCCCGCTTCCACCCGGAGCC
GGGCTTCGGCTTTATGTACGGCACCAAGCAGGGTCGCGTTCGAATGCTCC
GCCTCGCCTTCGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17606:104..770+

>mRNA_P-wetherbeei_contig17606.1.1 ID=mRNA_P-wetherbeei_contig17606.1.1|Name=mRNA_P-wetherbeei_contig17606.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig17606:104..770+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTTTGCTGTACACAAACAGCGCTCGGGAGGTGACATCGATCAAGCT
GTCGCCGTCGTCGGCCTTTGCCATCCTCGGCTGCGGGGTGCGCGACGCTG
TCCGACCCGGTGCACCCGACTATGTGGCCGGGGCGGGGGACCCGGCGTCA
GCGCGGCCGCACCCGGTGTCGTTCATCTACCGTACTTCAGACATGCGCCT
TGTGCACACGGTGCAGTCGGTGCAGGACGACGTCAACGTCGCCCGCTTCC
ACCCGGAGCCGGGCTTCGGCTTTATGTACGGCACCAAGCAGGGTCGCGTT
CGAATGCTCCGCCTCGCCTTCGACGAC
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