mRNA_P-wetherbeei_contig1760.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1760.1.1
Unique NamemRNA_P-wetherbeei_contig1760.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A836C9Z0_9STRA (DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z0_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.480e-60
Identity = 93/137 (67.88%), Postives = 117/137 (85.40%), Query Frame = 1
Query:    1 ELVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVR-EGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            E+ + V+PGWK+GTRVTFPSEGDEA G+VPADV+FVV E  HARF R +G+ LV+   LSLADALT+CVL+VPTLDGR LSL CPE+VSPGYEK +P EGMP+SK+P QRG+L++RFK+VFP +LPDDK+ ++R +L
Sbjct:  174 EVTVDVRPGWKRGTRVTFPSEGDEAPGIVPADVVFVVQEAPHARFSRGDGAQLVYCAPLSLADALTDCVLEVPTLDGRVLSLPCPEVVSPGYEKRVPKEGMPISKKPGQRGDLILRFKIVFPKYLPDDKKLKIRHIL 310          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A7S2V156_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V156_9STRA)

HSP 1 Score: 192 bits (488), Expect = 2.270e-58
Identity = 88/135 (65.19%), Postives = 111/135 (82.22%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            L I VKPGWKKGT++TFP EGDE   ++PADV+FVV EK H  F REGSNL++   ++LADALT+C ++VPTLDGR LSL CPE+VSPGYEK I GEGMPLSK+  QRG L+IRFK++FP +LP++K+ +LR+LL
Sbjct:  176 LTINVKPGWKKGTKITFPCEGDERPNIIPADVVFVVTEKEHEFFGREGSNLIYNAQITLADALTDCCIEVPTLDGRTLSLPCPEVVSPGYEKTIVGEGMPLSKKVGQRGELIIRFKILFPRYLPEEKKAKLRQLL 310          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: D8LSP2_ECTSI (Flagellar radial spoke protein 16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP2_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 1.090e-56
Identity = 87/136 (63.97%), Postives = 110/136 (80.88%), Query Frame = 1
Query:    1 ELVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            +L + VKPGWKKGT++TFP EGDE AG++PADV+ VVAE+ H  F REG++L++T  LSLADALT+C+++VPTLDGR L L CPE+VSPGYE+ + GEGMP+SK P  RG+L+IRFKLVFP FLP   +  LR LL
Sbjct:  178 QLTVAVKPGWKKGTKITFPGEGDEGAGVLPADVVLVVAERPHEYFSREGNDLIYTSMLSLADALTDCIIEVPTLDGRVLRLPCPEVVSPGYERRLEGEGMPISKNPGSRGDLLIRFKLVFPAFLPHASKVVLRRLL 313          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A7S3UUU7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUU7_HETAK)

HSP 1 Score: 185 bits (469), Expect = 4.590e-55
Identity = 83/135 (61.48%), Postives = 110/135 (81.48%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            + I VKPGWKKGT++TFP EGDE   ++PADV+FV+ E+ H  F REG+NLV+   ++LADALT+C ++VPTLDGR LSL CPE+V+PGYEK + GEGMPLSKQP +RG L++RF+L+FP +LP+ K+ +LR LL
Sbjct:  195 VTINVKPGWKKGTKITFPCEGDEKPNVIPADVVFVITEQEHDYFGREGNNLVYNSKITLADALTDCCIEVPTLDGRVLSLPCPEVVAPGYEKRLEGEGMPLSKQPGRRGALLVRFRLLFPKYLPEHKKVELRRLL 329          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A482SQL3_9ARCH (DnaJ_C domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQL3_9ARCH)

HSP 1 Score: 177 bits (449), Expect = 2.260e-54
Identity = 83/137 (60.58%), Postives = 112/137 (81.75%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHAR--FVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
             VI VKPGWKKGT+V+F +EGDE   ++PAD++FV+ E+N++   + REG+NLV+T  LSLADALT+C LQVPTLD R +S+ACPE+VSP YEK IPGEGMPL+K+P Q+G+L+IRF ++FP +L   K+ ++RELL
Sbjct:   33 FVINVKPGWKKGTKVSFVNEGDEGPNVIPADIVFVIQERNNSDPGYAREGNNLVYTYKLSLADALTDCSLQVPTLDQRVISIACPEVVSPFYEKFIPGEGMPLAKKPGQKGDLIIRFHILFPKYLDGVKRAKIRELL 169          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: F0XW96_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XW96_AURAN)

HSP 1 Score: 174 bits (440), Expect = 3.710e-51
Identity = 82/135 (60.74%), Postives = 103/135 (76.30%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            L I VKPGWKKGT+VTF +EGD A  +VPAD++F + E  H  F REG+NLV   T+ LADAL    ++VPTLDGRKLS++CPE+VSPGYEK +PGEGMPLSK P  RGNLVIRF +VFP +L   ++  L+++L
Sbjct:  187 LTIAVKPGWKKGTKVTFANEGDAAPNVVPADIVFTLNELPHGTFSREGANLVFVATVDLADALCGTTIEVPTLDGRKLSVSCPEVVSPGYEKTVPGEGMPLSKTPDVRGNLVIRFHIVFPKYLEQAQKDTLKKVL 321          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A7S1CED9_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CED9_9STRA)

HSP 1 Score: 168 bits (426), Expect = 4.130e-49
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQ--RGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            L I VK GWK GT +TFP+EGDE  G+VPAD+ FVVAEK H RF R+G+NLVH   ++L DALT+CV++V TLDGR LS+ C E++SPG  K++PGEGMP+SK      RG+L+++F +VFP  + +DK++QLR LL
Sbjct:  182 LEIRVKAGWKAGTTITFPNEGDEGPGIVPADIAFVVAEKPHPRFSRDGNNLVHNARVTLRDALTDCVVEVATLDGRTLSIPCNEVISPGATKVVPGEGMPISKAAAAGTRGDLILKFTIVFPSHISEDKKRQLRTLL 318          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A7S1TXQ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXQ9_9STRA)

HSP 1 Score: 165 bits (418), Expect = 3.610e-48
Identity = 74/119 (62.18%), Postives = 93/119 (78.15%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVF 360
            L I V+PGW+ GT+VTFP  GDEA G +  D++FV+ E  H RF RE +NLV+T  +SLADALTEC L VP LDGR LSL CPE+VSPGYEK+IP EGMP+SK P QRG++++RF ++F
Sbjct:  177 LTINVQPGWRAGTKVTFPGAGDEAPGSLAPDLVFVIQEAAHTRFTREKANLVYTAHISLADALTECALSVPMLDGRTLSLPCPEVVSPGYEKVIPSEGMPVSKSPGQRGDMLVRFNIIF 295          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A5A8DMM8_CAFRO (J domain-containing protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8DMM8_CAFRO)

HSP 1 Score: 162 bits (410), Expect = 1.880e-46
Identity = 78/135 (57.78%), Postives = 102/135 (75.56%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            L I VKPGWK GTR+TF +EGD+A G+VPAD++FV+AEK+H RF REG++LV    ++L  ALT     V TLD R LS+AC E++SPGYEK + GEGMP+SK P  RG+LV+RF++VFP  +P+DK+  LR  L
Sbjct:  206 LEIHVKPGWKAGTRITFENEGDQAPGVVPADIVFVIAEKHHPRFTREGNDLVVKARVTLLQALTTHTQSVRTLDDRTLSVACNEVLSPGYEKRVRGEGMPISKAPGTRGDLVLRFEVVFPSHIPEDKRDLLRRAL 340          
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Match: A0A8B7YC88_ACAPL (dnaJ homolog subfamily B member 13-like n=3 Tax=Asteroidea TaxID=7588 RepID=A0A8B7YC88_ACAPL)

HSP 1 Score: 157 bits (397), Expect = 1.770e-44
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 1
Query:    4 LVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGSNLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGMPLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL 408
            L ITVK GW++GTR+TFP EGD+    VPAD++F+V +K H RF R+ ++L+ T  + L  ALT C ++VPTLDGR L++   +I+ PGYEK++PGEGMPLS+ P ++GNL+IRF + FP  L  +K++ L+E L
Sbjct:  210 LTITVKRGWREGTRITFPKEGDQGPNNVPADIVFIVRDKPHPRFKRDSNDLIFTARVLLGKALTGCSVEVPTLDGRLLNVPINDIIRPGYEKVVPGEGMPLSRAPEEKGNLIIRFDIEFPKQLTSEKKRLLKEAL 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1760.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9Z0_9STRA1.480e-6067.88DnaJ domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S2V156_9STRA2.270e-5865.19Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LSP2_ECTSI1.090e-5663.97Flagellar radial spoke protein 16 n=1 Tax=Ectocarp... [more]
A0A7S3UUU7_HETAK4.590e-5561.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SQL3_9ARCH2.260e-5460.58DnaJ_C domain-containing protein n=1 Tax=archaeon ... [more]
F0XW96_AURAN3.710e-5160.74J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A7S1CED9_9STRA4.130e-4957.66Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S1TXQ9_9STRA3.610e-4862.18Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5A8DMM8_CAFRO1.880e-4657.78J domain-containing protein n=3 Tax=Sar TaxID=2698... [more]
A0A8B7YC88_ACAPL1.770e-4451.85dnaJ homolog subfamily B member 13-like n=3 Tax=As... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1760contigP-wetherbeei_contig1760:5..760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSP2
PFAMsDnaJ,DnaJ_C
Model size408
Max annot lvl2759|Eukaryota
KEGG koko:K09510,ko:K09519
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.79e-57
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
Cds size408
COG categoryO
BRITEko00000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186121.0202074-CDS-P-wetherbeei_contig1760:4..2141683186121.0202074-CDS-P-wetherbeei_contig1760:4..214Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1760 5..214 +
1683186121.0317922-CDS-P-wetherbeei_contig1760:562..7601683186121.0317922-CDS-P-wetherbeei_contig1760:562..760Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1760 563..760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1760.1.1prot_P-wetherbeei_contig1760.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1760 5..760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1760.1.1

>prot_P-wetherbeei_contig1760.1.1 ID=prot_P-wetherbeei_contig1760.1.1|Name=mRNA_P-wetherbeei_contig1760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
ELVITVKPGWKKGTRVTFPSEGDEAAGMVPADVIFVVAEKNHARFVREGS
NLVHTCTLSLADALTECVLQVPTLDGRKLSLACPEIVSPGYEKIIPGEGM
PLSKQPHQRGNLVIRFKLVFPVFLPDDKQKQLRELL
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mRNA from alignment at P-wetherbeei_contig1760:5..760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1760.1.1 ID=mRNA_P-wetherbeei_contig1760.1.1|Name=mRNA_P-wetherbeei_contig1760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=756bp|location=Sequence derived from alignment at P-wetherbeei_contig1760:5..760+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCGTCATTACGGTAAAGCCCGGCTGGAAGAAAGGCACACGTGTGAC CTTCCCGTCGGAGGGGGACGAGGCGGCCGGGATGGTGCCGGCCGACGTCA TCTTTGTAGTCGCCGAGAAGAACCACGCCCGCTTTGTGCGGGAGGGTAGC AATCTGGTGCACACCTGCACGCTGTCGCTCGCCGACGCGCTGACGGAGTG CGTTCTGCAGGTGAGGAAAGAAGGAAGTTTAAGGATAAAGGAGGGATCAC GCAGGTGGAATCGCCATGTCTATTGGTTCTGAACTCGCTTTGTTTGCTCG CCTCCGCAGCGAAATTTGCACTGCTGCGAAAGAATCACAAGGAAGCTACT CGTTTAGGGCGTCAACAGCGTGTTGCAATTTCGCTCGTCGACATCTCTGT GGAGCATGGTTGAAGCATCGAGAGTGGTCTTCTGTCGCAAGGCATGCCAA CGAGACAGTTGCAGGTGGCCATCGATTTCTTGCATCTGTTCTCTTCGTTC GGCCATCTTAACGCCTCCATCAATCCCACTTTCGCTGGACATCCACACCA CTTTCCAGGTCCCAACACTGGACGGGAGGAAGCTGAGCCTCGCCTGCCCG GAGATTGTCAGCCCTGGATACGAGAAGATCATTCCCGGCGAGGGCATGCC GCTGAGCAAGCAGCCGCACCAGCGGGGAAACCTCGTCATCCGCTTCAAGC TCGTTTTCCCCGTATTCCTGCCAGACGACAAGCAGAAGCAGCTGCGGGAG CTGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1760:5..760+

>mRNA_P-wetherbeei_contig1760.1.1 ID=mRNA_P-wetherbeei_contig1760.1.1|Name=mRNA_P-wetherbeei_contig1760.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig1760:5..760+ (Phaeothamnion wetherbeei SAG_119_79)
GAGCTCGTCATTACGGTAAAGCCCGGCTGGAAGAAAGGCACACGTGTGAC
CTTCCCGTCGGAGGGGGACGAGGCGGCCGGGATGGTGCCGGCCGACGTCA
TCTTTGTAGTCGCCGAGAAGAACCACGCCCGCTTTGTGCGGGAGGGTAGC
AATCTGGTGCACACCTGCACGCTGTCGCTCGCCGACGCGCTGACGGAGTG
CGTTCTGCAGGTCCCAACACTGGACGGGAGGAAGCTGAGCCTCGCCTGCC
CGGAGATTGTCAGCCCTGGATACGAGAAGATCATTCCCGGCGAGGGCATG
CCGCTGAGCAAGCAGCCGCACCAGCGGGGAAACCTCGTCATCCGCTTCAA
GCTCGTTTTCCCCGTATTCCTGCCAGACGACAAGCAGAAGCAGCTGCGGG
AGCTGCTG
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