mRNA_P-wetherbeei_contig17570.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17570.2.1
Unique NamemRNA_P-wetherbeei_contig17570.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: Q60CM0_METCA (Type 4 fimbrial biogenesis protein PilE n=4 Tax=Methylococcus TaxID=413 RepID=Q60CM0_METCA)

HSP 1 Score: 104 bits (260), Expect = 8.680e-26
Identity = 58/151 (38.41%), Postives = 93/151 (61.59%), Query Frame = 1
Query:   10 KQAMTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
            K ++T AR +    GF+L+ELMI V I+GI++++A+P+YK ++ R +R++GKA L+  A R+E+Y+ DN +Y +D T LG+A S  KSD+G+Y ++   +D +       + LQ     P  D  CG  LTL+S G +      +V  CW+
Sbjct:    7 KVSITPARRAAEGRGFSLLELMITVAIIGILATVAYPSYKEHIVRTRRADGKAALLRAAAREEQYFMDNKTYTSDVTRLGFA-SNGKSDEGHYVISVTAADAN------GFTLQATPQSPHTDALCGN-LTLNSLGVKGKSGSGSVADCWN 149          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A858Q5D0_9GAMM (Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Methylococcus geothermalis TaxID=2681310 RepID=A0A858Q5D0_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 1.530e-25
Identity = 60/146 (41.10%), Postives = 92/146 (63.01%), Query Frame = 1
Query:   25 GARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
            GAR  R + GFTL+ELMI V I+GI+++IA+P+YK +V R +R++GKA L+  A R+E Y+ DN +Y +D T+LG+A +  KSD+G+Y ++   +D +T      + LQ     P  D  CG  LTL++ G +      +V  CW+
Sbjct:   21 GAR-GRSRRGFTLIELMITVAIIGILAAIAYPSYKEHVIRTRRADGKAALLRAAAREELYFMDNKTYTSDVTKLGFAANG-KSDEGHYVISVTAADANT------FALQAAPQSPHTDALCGN-LTLNALGVKGQSGSGSVADCWN 157          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2A2IVB8_9PSED (Pilus assembly protein PilE n=2 Tax=Pseudomonas sp. HAR-UPW-AIA-41 TaxID=1985301 RepID=A0A2A2IVB8_9PSED)

HSP 1 Score: 102 bits (255), Expect = 3.440e-25
Identity = 68/148 (45.95%), Postives = 90/148 (60.81%), Query Frame = 1
Query:   19 MTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDT-CGEFLTLDSKGAQ-DSDSGD-AVCW 453
            M  + F R   GFTL+ELMIVV I+GI+S+IA+P+Y+ YV R  RSEG+AFL + A RQERYY  NN+YA  A +LGYA +   S +   A++N  +        T+Y L   T  P   D+ CG  LTL+  G + +S SG  A CW
Sbjct:    1 MHSSPFKRHMAGFTLIELMIVVAIIGIISAIAYPSYQEYVLRGNRSEGQAFLNDAAARQERYYAQNNTYADTAAKLGYANNNSSSSKYTLAISNVSA--------TTYTL---TATPAQTDSKCGN-LTLNQAGTKGESGSGTLADCW 136          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: UPI0018E063ED (prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Methylococcus sp. BF19-07 TaxID=2743472 RepID=UPI0018E063ED)

HSP 1 Score: 101 bits (252), Expect = 1.320e-24
Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   43 GQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAV--CWS 456
            G  GF+LMELMI V I+GI+++IA+P+Y+ ++ R +R++GKA L+  A R+E+Y+ DN +Y +D T LG+A S  KSD+G+Y ++   +D +       + LQ     P  D  CG  LTL+S G +      +V  CW+
Sbjct:   16 GGGGFSLMELMITVAIIGILAAIAYPSYQEHLVRTRRADGKAALLRAAAREEQYFLDNKTYTSDVTRLGFA-SNGKSDEGHYVISVTAADAN------GFTLQATPQSPHTDARCGN-LTLNSVGVKGKSGSGSVADCWN 147          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A4XQV9_PSEMY (Tfp pilus assembly protein PilE-like protein n=1 Tax=Pseudomonas mendocina (strain ymp) TaxID=399739 RepID=A4XQV9_PSEMY)

HSP 1 Score: 100 bits (250), Expect = 2.180e-24
Identity = 59/141 (41.84%), Postives = 86/141 (60.99%), Query Frame = 1
Query:   46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYAT--STPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQD---SDSGDAVCW 453
            Q GFTL+E+MIV+V++GI++SIA+P+Y  YV R  RSEG+AFL ++A RQERY+  NN+Y  +  ++G     +  KS+ G Y L     D D G   T+        + ++D TCG  LTL+++G +    SD   A CW
Sbjct:    8 QQGFTLIEVMIVIVVIGILASIAYPSYSEYVKRGNRSEGQAFLNDVAARQERYFSQNNAYVTNNADIGNLALKNGNKSETGKYELVLSKVDNDGGYTLTAE-------EQFNDTTCGN-LTLNARGVRGRTGSDMSAADCW 140          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2G6EG45_9GAMM (Pilus assembly protein PilE n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6EG45_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 6.400e-23
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query:   52 GFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYA-TSTPKSDQGNY--ALTNPVSDGDTGSITTSYVLQINTV--DPWHDDT-CGEFLTLDSKGAQDSDSGDAVCW 453
            GFTL+E++IVV I+GI++++A P Y AYV+R  R++   FLME+AG QERY+ +NN++A +  ELGY   +T K+ +G Y  ++ NP         TTS+ L    V   P  +DT CG F TL S GA+ +    + CW
Sbjct:   34 GFTLIEVLIVVAIIGILAAVATPIYSAYVERTYRTDAIGFLMEVAGEQERYFTENNTFATEMKELGYGKAATFKTPEGYYTVSIANPT--------TTSFKLTATPVADGPQANDTDCGSF-TLTSTGARGNSGSGSDCW 164          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A7Y2I8F7_9GAMM (Type IV pilin protein n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y2I8F7_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 6.780e-23
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   52 GFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPK--SDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLT--LDSKGAQDSDSGDAVCWSK 459
            G TL+ELM+V+VIVGI++S+A+P Y+ +V RAKRSE +A L+ LA  QER+Y +NN++ AD T LG+A STPK  ++ G Y +    +D    S T +Y LQ  +         G+ LT  +D +GA+ S   D  CW +
Sbjct:    9 GITLVELMVVIVIVGILASVAYPNYQEFVARAKRSEARAALLRLATNQERFYLNNNTFTADLTSLGFA-STPKVETETGYYEIEVTSADASNFSATATY-LQGGS-------EAGKCLTYTIDGRGAKSS-GPDTNCWER 138          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: Q0HS90_SHESR (Methylation site containing protein n=1 Tax=Shewanella sp. (strain MR-7) TaxID=60481 RepID=Q0HS90_SHESR)

HSP 1 Score: 96.7 bits (239), Expect = 7.930e-23
Identity = 55/136 (40.44%), Postives = 83/136 (61.03%), Query Frame = 1
Query:   46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAVCW 453
            Q GFTL+E+MI VVI+GI++SIA+P+Y  Y+ R+ RSEG A +M +A  QE+YY DN +YA D T+LG + +   ++ G+Y+L + VS G      T+  +Q +      D  C + +T+ S GA+        CW
Sbjct:    6 QKGFTLIEVMITVVIIGILASIAYPSYTNYITRSARSEGVAAVMRVANLQEQYYLDNRAYATDMTKLGLSANPFVTEHGHYSLASAVSSGTLTITATALGVQYS-----RDSVC-KTITMTSAGAK---GPSPECW 132          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: W8QUN0_PSEST (Pilus assembly protein PilE n=1 Tax=Pseudomonas stutzeri TaxID=316 RepID=W8QUN0_PSEST)

HSP 1 Score: 96.7 bits (239), Expect = 9.850e-23
Identity = 65/146 (44.52%), Postives = 84/146 (57.53%), Query Frame = 1
Query:   40 RGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSY---AADATELGYATSTPK---SDQGNYALTNPVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDA--VCW 453
            R Q GFTL+E+MIVV I+GI+++IA+P+Y+ YV R  R+EG+A L E A RQERY+  NN Y   AAD  +L   +ST     SD G Y LT    DGD G  T S   Q +      D  CG  LTL++ G + +    A   CW
Sbjct:    3 RDQSGFTLIEIMIVVAIIGILAAIAYPSYQEYVLRGNRTEGQALLSEAAARQERYFAQNNRYITDAADVAKLNLRSSTSSGVTSDTGKYTLTVGAEDGD-GGYTLSADQQFS------DTACGN-LTLNAVGIKGNTGSRAWSECW 140          
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Match: A0A2A5CSN8_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2A5CSN8_9GAMM)

HSP 1 Score: 95.5 bits (236), Expect = 3.270e-22
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = 1
Query:   46 QYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAKRSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTNPVSDGDTGSITTSYVLQ---INTVDPWHDDTCGEFLTLDSKGAQDSDSGDAVCW 453
            Q GFTL+ELMIVVVIVG++ +IA PAY+  V + KRS+  A LM+   RQE++  D N+Y  D T+LG+A     S + +Y +      G TGSI TSY L    + T     DD C  F+   +     + + +  CW
Sbjct:    9 QKGFTLLELMIVVVIVGVLMAIALPAYQDSVRKGKRSDAMAALMDAVNRQEQFMLDRNTYTLDMTDLGFAADPLVSTELHYTI--DAVAGTTGSIATSYTLTATPVGTSTQADDDRCTSFIITSNGIKTATGTNNTQCW 145          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17570.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q60CM0_METCA8.680e-2638.41Type 4 fimbrial biogenesis protein PilE n=4 Tax=Me... [more]
A0A858Q5D0_9GAMM1.530e-2541.10Prepilin-type N-terminal cleavage/methylation doma... [more]
A0A2A2IVB8_9PSED3.440e-2545.95Pilus assembly protein PilE n=2 Tax=Pseudomonas sp... [more]
UPI0018E063ED1.320e-2440.00prepilin-type N-terminal cleavage/methylation doma... [more]
A4XQV9_PSEMY2.180e-2441.84Tfp pilus assembly protein PilE-like protein n=1 T... [more]
A0A2G6EG45_9GAMM6.400e-2342.86Pilus assembly protein PilE n=1 Tax=Gammaproteobac... [more]
A0A7Y2I8F7_9GAMM6.780e-2343.57Type IV pilin protein n=1 Tax=Woeseiaceae bacteriu... [more]
Q0HS90_SHESR7.930e-2340.44Methylation site containing protein n=1 Tax=Shewan... [more]
W8QUN0_PSEST9.850e-2344.52Pilus assembly protein PilE n=1 Tax=Pseudomonas st... [more]
A0A2A5CSN8_9GAMM3.270e-2240.29Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17570contigP-wetherbeei_contig17570:707..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog243233.MCA0086
PFAMsComP_DUS,N_methyl
Model size462
Max annot lvl135618|Methylococcales
KEGG koko:K02655
KEGG TC3.A.15.2
Hectar predicted targeting categorysignal anchor
Exons1
Evalue1.42e-26
EggNOG OGsCOG4968@1|root,COG4968@2|Bacteria,1N6QE@1224|Proteobacteria,1SCBS@1236|Gammaproteobacteria,1XFP2@135618|Methylococcales
DescriptionType IV minor pilin ComP, DNA uptake sequence receptor
Cds size462
COG categoryU
BRITEko00000,ko02035,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186120.3657906-CDS-P-wetherbeei_contig17570:706..11681683186120.3657906-CDS-P-wetherbeei_contig17570:706..1168Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17570 707..1168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17570.2.1prot_P-wetherbeei_contig17570.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17570 707..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17570.2.1

>prot_P-wetherbeei_contig17570.2.1 ID=prot_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=154bp
MTNKQAMTGARFSRGQYGFTLMELMIVVVIVGIMSSIAFPAYKAYVDRAK
RSEGKAFLMELAGRQERYYFDNNSYAADATELGYATSTPKSDQGNYALTN
PVSDGDTGSITTSYVLQINTVDPWHDDTCGEFLTLDSKGAQDSDSGDAVC
WSK*
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mRNA from alignment at P-wetherbeei_contig17570:707..1168-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17570.2.1 ID=mRNA_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17570:707..1168- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAACAAGCAAGCGATGACTGGCGCCCGATTCTCGCGGGGCCAATA CGGCTTCACCTTGATGGAGCTGATGATCGTAGTGGTCATCGTCGGCATCA TGTCGAGTATCGCCTTTCCTGCCTATAAGGCTTATGTGGATCGCGCCAAG CGTAGTGAAGGCAAGGCGTTCCTGATGGAACTTGCGGGGCGCCAGGAACG CTATTACTTCGACAACAACTCCTACGCAGCCGATGCCACAGAGCTCGGCT ACGCCACCAGCACACCGAAATCTGACCAAGGGAACTACGCGCTGACCAAT CCGGTCAGCGACGGCGACACCGGTAGCATCACCACCAGCTACGTGCTCCA GATCAATACCGTCGATCCGTGGCATGACGATACCTGCGGAGAATTTCTGA CGCTCGATTCTAAAGGGGCACAGGACAGCGACTCTGGCGACGCTGTCTGT TGGTCCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17570:707..1168-

>mRNA_P-wetherbeei_contig17570.2.1 ID=mRNA_P-wetherbeei_contig17570.2.1|Name=mRNA_P-wetherbeei_contig17570.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=462bp|location=Sequence derived from alignment at P-wetherbeei_contig17570:707..1168- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAACAAGCAAGCGATGACTGGCGCCCGATTCTCGCGGGGCCAATA
CGGCTTCACCTTGATGGAGCTGATGATCGTAGTGGTCATCGTCGGCATCA
TGTCGAGTATCGCCTTTCCTGCCTATAAGGCTTATGTGGATCGCGCCAAG
CGTAGTGAAGGCAAGGCGTTCCTGATGGAACTTGCGGGGCGCCAGGAACG
CTATTACTTCGACAACAACTCCTACGCAGCCGATGCCACAGAGCTCGGCT
ACGCCACCAGCACACCGAAATCTGACCAAGGGAACTACGCGCTGACCAAT
CCGGTCAGCGACGGCGACACCGGTAGCATCACCACCAGCTACGTGCTCCA
GATCAATACCGTCGATCCGTGGCATGACGATACCTGCGGAGAATTTCTGA
CGCTCGATTCTAAAGGGGCACAGGACAGCGACTCTGGCGACGCTGTCTGT
TGGTCCAAGTGA
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