mRNA_P-wetherbeei_contig1756.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1756.2.1
Unique NamemRNA_P-wetherbeei_contig1756.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1756.2.1 vs. uniprot
Match: A0A6H5KJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ25_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 9.670e-39
Identity = 138/369 (37.40%), Postives = 176/369 (47.70%), Query Frame = 1 
Query:   73 QVVHKATRYSTVGGRAVRGSFTCPADGRVVLLWDNSHSRIWGKRLSYAVESVTPSTMRAATEAADAAAKKQKQPKAVASPVKGAVAPAAANAXXSPACGAPARSGISSTAXXXXXXDDRGSXXXXXXSGDDRNDRSLPQADSDARGVA-----GVVRRTAAALLRYT-------------------------SAWAYAGGAASDANGXXXXXXXXXXXXXARGVQEMVSRFEALEDELASESARRAQSGAQAKLLLAHLRKTAAEKGRVERRMREADAQLADAAAAGREMXXXXXXXXXXXXXXXXXAAVLEERRLATQRERDLLQAERNVWQVARSGIQAELVKVAAALELERHAHHDSRRALGRAHE 1089
            + VH  TRYST GG  V+GSF+CPA G  +L WDN+ SR+ GKRL +  ESVT  TM+AA EAA AA  K++  ++           AAA            R  +          DD          G+D    S+    SDA   +     G VRR  A LLR                           S    +GG+A D                A GV ++V++FE LEDE+AS SARRAQS AQAK+LLA+L+K+ A   R+ER + E    L+      RE                      EE+ L  +R+ +LLQAER+VW VARSGIQ EL KV A LE ERH H D+ RAL ++HE
Sbjct:  381 ETVHLPTRYSTGGGDPVQGSFSCPAAGTCILRWDNAFSRLRGKRLCFVFESVTVQTMQAAIEAAGAADHKRRAARS-----------AAAQTILDSG-----RGEVKVCVTAVGAADDYSGGEEDGKEGNDGGIYSVSAGSSDAIYYSSLYRFGRVRRVVAGLLRDLGGMVDVTRTSGGIDGAAIAESGRGGSGSGSSGGSAFDVGRGSAGRGDRYGNVNAEGVAKLVAQFELLEDEVASVSARRAQSEAQAKVLLANLQKSNARTDRLERSLEETREDLSTVRETLRETETARDEAAAAATEAGARLQTSEEQLLRARRQHNLLQAERSVWHVARSGIQEELAKVVAELEQERHRHEDTSRALAKSHE 733
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BLAST of mRNA_P-wetherbeei_contig1756.2.1 vs. uniprot
Match: A0A835ZFW3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.430e-22
Identity = 136/355 (38.31%), Postives = 171/355 (48.17%), Query Frame = 1 
Query:   76 VVHKATRYSTVGGRAVRGSFTCPADGRVVLLWDNSHSRIWGKRLSYAVESVTPSTMRAATEAADAAAKKQKQPKAVASPVKGAVAPAAANAXXSPACGAPARSGISSTAXXXXXXDDRGSXXXXXXSGDDRNDRSLPQADSDARGVAGVVRRT-----AAALLRYTSAWAYAGGAASDANGXXXXXXXXXXXXXARGVQEMVSRFEALEDELASESARRAQSGAQAKLLLAHLRKTAAEKGRVERRMREADAQLADAAAAGREMXXXXXXXXXXXXXXXXXAAVLEERRLATQRERDLLQAERNVWQVARSGIQAELVKVAAALELERHAHHDSRRALGRAHEAQQRAELENLRL 1125
            +VH+ TRY   GG  V+GS T  ADG   L W N HSR+ GKRL +  E+V  + MRAA +AADA A K       AS  +G     +A    +P  GA          XXXXXX     XXXX   G D          S    V  V+R +      A                     XXXXXXXX        V  ++  +E LEDELA  SARRAQ+ AQ K+LLA L++  A+    +   +   A+L +      +M                     EER LA +RE +LLQAER+VWQVARSGIQ+EL +   ALE E+HAH D+R AL R+  A +R E E  RL
Sbjct:  295 LVHRRTRYP--GGARVQGSCTSAADGLCALRWGNGHSRLRGKRLYFVAEAVDAAAMRAAVQAADACAFK-------ASAARG----GSAQQRITP--GAAVSVXXXXXXXXXXXXXXXXXXXXXSPGGGDPPAGRFSLTRSAYNLVWNVLRLSPYYGLGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLSEYEERVATLLVNYERLEDELAGMSARRAQAEAQTKVLLAQLQRAKADVASAQEGWQGTRAELCEMTRRADDMALEREEALQEAHSAERAQLQAEERLLAARRECELLQAERSVWQVARSGIQSELARAVGALETEKHAHEDARAALKRSQTAVERLEAERQRL 634
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BLAST of mRNA_P-wetherbeei_contig1756.2.1 vs. uniprot
Match: W7T666_9STRA (PX domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T666_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 3.310e-9
Identity = 54/144 (37.50%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:  661 MVSRFEALEDELASESARRAQSGAQAKLLLAHLRKTAAEKGRVERRMREADAQLADAAAAGREMXXXXXXXXXXXXXXXXXAAVLEERRLATQRERDLLQAERNVWQVARSGIQAELVKVAAALELERHAHHDSRRALGRAHEA 1092
            +V   E LEDE+A  +A++ Q+ A+A + LA  R+ + EK + ERRM EA A+        + +                 A  L E R   +RER++L AE+ VW +A SG+QAEL  +   LE ER AH D+R A  +A EA
Sbjct:  274 VVGLVEELEDEVAQMAAKKEQAEAEAVIALAKQRRWSIEKEKFERRMLEALARGETLGEQVKALRAEKAGLEAEVGRKEEEAVALREARKRAEREREVLAAEKQVWTLAHSGVQAELTSLTGTLERERGAHEDTRGAWKKAKEA 417
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BLAST of mRNA_P-wetherbeei_contig1756.2.1 vs. uniprot
Match: D8LGY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY0_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 6.600e-9
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 1 
Query:  916 EERRLATQRERDLLQAERNVWQVARSGIQAELVKVAAALELERHAHHDSRRALGRAHE 1089
            EE+ L  +R+ DLLQAER+VW VARSGIQ EL KV A LE ERH H D+ RAL ++HE
Sbjct:  491 EEQLLRARRQHDLLQAERSVWHVARSGIQEELAKVVAELEQERHRHEDTSRALAKSHE 548
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1756.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KJ25_9PHAE9.670e-3937.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZFW3_9STRA8.430e-2238.31Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7T666_9STRA3.310e-937.50PX domain-containing protein n=3 Tax=Monodopsidace... [more]
D8LGY0_ECTSI6.600e-963.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1756contigP-wetherbeei_contig1756:4988..6676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGY0
Model size1125
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue8.36e-19
EggNOG OGs28HD3@1|root,2QPRD@2759|Eukaryota
Ec32 ortholog descriptionGOLD
Ec32 orthologEc-14_001500.1
Cds size1125
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186120.0457604-CDS-P-wetherbeei_contig1756:4987..51941683186120.0457604-CDS-P-wetherbeei_contig1756:4987..5194Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1756 4988..5194 +
1683186120.0570195-CDS-P-wetherbeei_contig1756:5379..56471683186120.0570195-CDS-P-wetherbeei_contig1756:5379..5647Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1756 5380..5647 +
1683186120.0648446-CDS-P-wetherbeei_contig1756:5779..62851683186120.0648446-CDS-P-wetherbeei_contig1756:5779..6285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1756 5780..6285 +
1683186120.0722973-CDS-P-wetherbeei_contig1756:6532..66761683186120.0722973-CDS-P-wetherbeei_contig1756:6532..6676Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1756 6533..6676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1756.2.1prot_P-wetherbeei_contig1756.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1756 4988..6676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1756.2.1

>prot_P-wetherbeei_contig1756.2.1 ID=prot_P-wetherbeei_contig1756.2.1|Name=mRNA_P-wetherbeei_contig1756.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=375bp
GADGGSATAGGATGGSEGGGGSGMQVVHKATRYSTVGGRAVRGSFTCPAD
GRVVLLWDNSHSRIWGKRLSYAVESVTPSTMRAATEAADAAAKKQKQPKA
VASPVKGAVAPAAANAAASPACGAPARSGISSTASSSGSSDDRGSTDGGG
GSGDDRNDRSLPQADSDARGVAGVVRRTAAALLRYTSAWAYAGGAASDAN
GGGDGSGGAGGAAAARGVQEMVSRFEALEDELASESARRAQSGAQAKLLL
AHLRKTAAEKGRVERRMREADAQLADAAAAGREMAAALAAARERAAAAEA
AAAVLEERRLATQRERDLLQAERNVWQVARSGIQAELVKVAAALELERHA
HHDSRRALGRAHEAQQRAELENLRL
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mRNA from alignment at P-wetherbeei_contig1756:4988..6676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1756.2.1 ID=mRNA_P-wetherbeei_contig1756.2.1|Name=mRNA_P-wetherbeei_contig1756.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig1756:4988..6676+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGACGGCGGCTCCGCCACTGCAGGCGGAGCAACGGGCGGTAGCGA
GGGGGGGGGCGGCAGCGGTATGCAGGTCGTGCACAAGGCGACGCGTTACT
CGACGGTCGGCGGGCGCGCCGTACGGGGCAGTTTCACGTGCCCCGCCGAT
GGGCGCGTCGTGCTGCTGTGGGACAATAGCCACTCGAGAATCTGGGGAAA
GCGGCTGGTACGACGCAACGAACAGAATCGTTTATAATGGCTCAGAAGTG
CTCTGACATTGATGTGCTGCTCATTCCTATTGCGTAACGAGCCGAGTTTC
AATTTCTTCTACTTTTCCCACCTTTCTTCCGTTTGCGGCCACGCCGCCAC
CTGATGTCCTTAGATCTTTCAATGCGTTTCCCCTGGCGGCAGTCGTATGC
GGTGGAGTCGGTGACTCCAAGTACCATGCGCGCGGCCACCGAGGCTGCCG
ACGCCGCCGCCAAGAAGCAGAAGCAGCCCAAGGCAGTGGCAAGCCCGGTC
AAAGGCGCGGTCGCTCCCGCTGCCGCCAACGCTGCCGCCTCCCCTGCTTG
TGGTGCCCCTGCTCGCAGCGGAATCAGCAGCACCGCCAGCAGCAGCGGCA
GCAGCGATGATAGGGGCAGCACCGACGGCGGCGGTGGGAGTGGTGACGAC
AGAAACGATAGTGTTATTGTCGGCAGCGGCGGCGACAGCAGCGGCACGGT
ATCGATTCTGGTGGAGCTCGCCGAACCGGAGGCCACGTTGGGCGGAAGCG
CCGCGCCGGGCTTGCTGGCCGCCGCCTCCGCTGCCGAGGCAGGGTCCTTG
CCGCAGGCCGATTCCGACGCGCGCGGCGTTGCCGGCGTTGTTCGGCGCAC
TGCCGCCGCCCTCCTGCGCTACACTTCAGCATGGGCATACGCAGGCGGAG
CCGCGTCCGACGCCAACGGTGGTGGTGACGGCAGCGGGGGGGCTGGCGGA
GCTGCGGCGGCGCGGGGCGTCCAGGAGATGGTGTCGCGGTTCGAGGCACT
CGAAGACGAGCTGGCCTCCGAGTCGGCGCGGCGGGCGCAGAGCGGCGCCC
AGGCCAAGCTGCTGCTGGCGCACCTCCGCAAGACGGCCGCCGAGAAGGGC
CGCGTGGAGCGGCGGATGCGCGAGGCCGATGCGCAGCTGGCCGATGCGGC
AGCGGCCGGGCGTGAGATGGCGGCAGCACTGGCGGCAGCCAGGGAGCGGG
CGGCGGCGGCCGAGGCGGCGGCGGCGGTACTGGAAGAGCGGCGGCTGGCG
ACGCAGCGGGAGCGCGACCTGCTGCAGGCGGAGCGCAACGTCTGGCAGGT
GTGCATCGACTGCTGGCTATTCGTCTTTCGCCGCATAGTCTGCATTAGAA
GTTGCTGCTGCACTCTTCTTCTTTCCTTCCCCGCAGCTGCTTCATCTTGC
TCGTGCATTCTCTCTCTCTCCCTTATTCCTTGCATTCCTGTCTCTGACGC
TTGGATGGCAGTAAACCTCTTGCACTGTTCATCATTCTGCATGAGCCCTT
CGGGGGCAACTTGCACCGCGTTGCCCCGTATAACGATGCAAGCAGGTGGC
GCGCAGCGGCATCCAGGCGGAACTGGTCAAGGTAGCGGCGGCCCTCGAGC
TCGAGCGGCACGCACATCACGATTCGCGCCGCGCCCTTGGCCGTGCCCAT
GAGGCACAGCAGCGGGCCGAGCTGGAGAACCTCCGCCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1756:4988..6676+

>mRNA_P-wetherbeei_contig1756.2.1 ID=mRNA_P-wetherbeei_contig1756.2.1|Name=mRNA_P-wetherbeei_contig1756.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1125bp|location=Sequence derived from alignment at P-wetherbeei_contig1756:4988..6676+ (Phaeothamnion wetherbeei SAG_119_79)
GGCGCCGACGGCGGCTCCGCCACTGCAGGCGGAGCAACGGGCGGTAGCGA
GGGGGGGGGCGGCAGCGGTATGCAGGTCGTGCACAAGGCGACGCGTTACT
CGACGGTCGGCGGGCGCGCCGTACGGGGCAGTTTCACGTGCCCCGCCGAT
GGGCGCGTCGTGCTGCTGTGGGACAATAGCCACTCGAGAATCTGGGGAAA
GCGGCTGTCGTATGCGGTGGAGTCGGTGACTCCAAGTACCATGCGCGCGG
CCACCGAGGCTGCCGACGCCGCCGCCAAGAAGCAGAAGCAGCCCAAGGCA
GTGGCAAGCCCGGTCAAAGGCGCGGTCGCTCCCGCTGCCGCCAACGCTGC
CGCCTCCCCTGCTTGTGGTGCCCCTGCTCGCAGCGGAATCAGCAGCACCG
CCAGCAGCAGCGGCAGCAGCGATGATAGGGGCAGCACCGACGGCGGCGGT
GGGAGTGGTGACGACAGAAACGATAGGTCCTTGCCGCAGGCCGATTCCGA
CGCGCGCGGCGTTGCCGGCGTTGTTCGGCGCACTGCCGCCGCCCTCCTGC
GCTACACTTCAGCATGGGCATACGCAGGCGGAGCCGCGTCCGACGCCAAC
GGTGGTGGTGACGGCAGCGGGGGGGCTGGCGGAGCTGCGGCGGCGCGGGG
CGTCCAGGAGATGGTGTCGCGGTTCGAGGCACTCGAAGACGAGCTGGCCT
CCGAGTCGGCGCGGCGGGCGCAGAGCGGCGCCCAGGCCAAGCTGCTGCTG
GCGCACCTCCGCAAGACGGCCGCCGAGAAGGGCCGCGTGGAGCGGCGGAT
GCGCGAGGCCGATGCGCAGCTGGCCGATGCGGCAGCGGCCGGGCGTGAGA
TGGCGGCAGCACTGGCGGCAGCCAGGGAGCGGGCGGCGGCGGCCGAGGCG
GCGGCGGCGGTACTGGAAGAGCGGCGGCTGGCGACGCAGCGGGAGCGCGA
CCTGCTGCAGGCGGAGCGCAACGTCTGGCAGGTGGCGCGCAGCGGCATCC
AGGCGGAACTGGTCAAGGTAGCGGCGGCCCTCGAGCTCGAGCGGCACGCA
CATCACGATTCGCGCCGCGCCCTTGGCCGTGCCCATGAGGCACAGCAGCG
GGCCGAGCTGGAGAACCTCCGCCTC
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