mRNA_P-wetherbeei_contig1751.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1751.2.1
Unique NamemRNA_P-wetherbeei_contig1751.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1751.2.1 vs. uniprot
Match: A0A7S3AJC5_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJC5_9EUKA)

HSP 1 Score: 57.4 bits (137), Expect = 3.790e-5
Identity = 84/309 (27.18%), Postives = 122/309 (39.48%), Query Frame = 2 
Query:  335 KLQGLVDSVVALRRSERVPLRLVVLHDIPGLAALADDAFESVELGPRETQRYADEWPFLGVNDMRFII-QRDYARRNPF-RDDECVFLVDASDVRILRHPGRLCAAEPPARLFVGNDVAGTGFCRR-------------DTKAGRWSKVL-------LVKTHYAWDEPELLPFLDERTAANYTHFTFANCGIVGGRGGAAPGYLERAGDILHRRER--HGLMRPVDMVIVNHLAAFWPNGT----------VYGFPEGPVNLPF------HHDCSQTRPP---------CDYAALEA---SGRFFFSHK 1105
            +L  +VD ++   +S        VLHD P    +    +  VEL  R T R A     L   D R++  +R+  R +    D++CVF +D SDVR++     LCA  P + LFVG+D   T   +R              T+   W +         +V   +A     L PFL +  A+   H+T            A P     A     RR R  +  +  VDM+  N L     NGT          + G+P GPVN P        H+C+              C YA   A   SG+++F+HK
Sbjct:   67 ELTTMVDKLID--QSFAASFSATVLHDSP----INFTEYRGVELR-RLTDRTASVVDRLPSIDGRWVAYERELLRHDGGPADNDCVFAIDLSDVRLIADAAMLCATHPSS-LFVGSDSCTTRPVKRWLNGLIPSAGFNASTRMREWMRTFSPVYNPGIVGGRFAL----LRPFLHQMAASIEAHYT------------ARPPRPLPASLPADRRSRQLNNSLFFVDMLYFNELL-LRRNGTAESETSSSALMIGYPHGPVNAPMWGNLCRDHNCTPETNNFAGFGNYDCCMYARQRAFVESGQYYFTHK 350
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1751.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3AJC5_9EUKA3.790e-527.18Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1751contigP-wetherbeei_contig1751:1388..3179 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1680
Hectar predicted targeting categoryother localisation
Exons2
Cds size1059
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.9039588-UTR-P-wetherbeei_contig1751:1387..15541683186118.9039588-UTR-P-wetherbeei_contig1751:1387..1554Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1751 1388..1554 +
1683186118.9269373-UTR-P-wetherbeei_contig1751:2725..31791683186118.9269373-UTR-P-wetherbeei_contig1751:2725..3179Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1751 2726..3179 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.9117472-CDS-P-wetherbeei_contig1751:1554..16861683186118.9117472-CDS-P-wetherbeei_contig1751:1554..1686Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1751 1555..1686 +
1683186118.9191763-CDS-P-wetherbeei_contig1751:1798..27251683186118.9191763-CDS-P-wetherbeei_contig1751:1798..2725Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1751 1799..2725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1751.2.1prot_P-wetherbeei_contig1751.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1751 1555..2725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1751.2.1

>prot_P-wetherbeei_contig1751.2.1 ID=prot_P-wetherbeei_contig1751.2.1|Name=mRNA_P-wetherbeei_contig1751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp
MACGATSCSSPLPLQPICPRRRCSPLSSAVFRTHTSAQPIFATPMCPIQP
PPMPWRSSKDSSTLSWRCAAPNASRSGSSCSTTSPGWRRWRTTPLSQWSS
ARGRRSATPTNGPSSASTTCASSSSATTRGETLSATTSASSSWMPPTSAS
CGTQGGSARPSRRRASSSATTSLARASAAATPRPAAGARFFWSRPTTHGT
SPSCCRSSTSAPPPTTLTSLLPTAASLAAAAVPRQGTWSAPATSCTAASA
TGSCALSTWSLSTTSPRFGPTAPFMASRKVPSTCRSIMTARRRARPATTR
RWRRPAASSSPTSEGRKGGGGSSHWFGGVTAECCCMGNGGPAAAAAEHVR
HL*
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mRNA from alignment at P-wetherbeei_contig1751:1388..3179+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1751.2.1 ID=mRNA_P-wetherbeei_contig1751.2.1|Name=mRNA_P-wetherbeei_contig1751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1792bp|location=Sequence derived from alignment at P-wetherbeei_contig1751:1388..3179+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGAAAACCGAAAATCAGGAGGAATCTCTCTCTTTTCAACAACTCCGCG
CTCAAACCCTCGGCGGTTCATAGAAAAGAGGGCACAGGCCTTCAGTGGCG
AGGCCAACTGACCTCCAACGACCAAACGTTTCTCTCTCACAGAAAGTGGC
CTCACAAAGGCCTCCCAATGGCATGTGGCGCTACCTCGTGCTCGTCGCCG
TTGCCATTGCAACCGATCTGCCCCCGACGACGGTGCTCACCTCTTTCTTC
GGCAGTTTTCCGCACACACACATCAGCACAACCCATTTTCGCAACACCTG
TGAGCGAGACTTTAGGCGTTTACAAATGTAGGGCAATTTTCCGAGAAGAG
TGGCGTCTTACCCCACCATGTCCTCTCGGCTTGTCCACGCGCATGCCTTT
TTCCTCGGCAGATGTGCCCCATCCAACCGCCGCCGATGCCATGGAGAAGC
TCCAAGGACTCGTCGACTCTGTCGTGGCGCTGCGCCGCTCCGAACGCGTC
CCGCTCCGGCTCGTCGTGCTCCACGACATCCCCGGGCTGGCGGCGCTGGC
GGACGACGCCTTTGAGTCAGTGGAGCTCGGCCCGCGGGAGACGCAGCGCT
ACGCCGACGAATGGCCCTTCCTCGGCGTCAACGACATGCGCTTCATCATC
CAGCGCGACTACGCGCGGCGAAACCCTTTCCGCGACGACGAGTGCGTCTT
CCTCGTGGATGCCTCCGACGTCCGCATCCTGCGGCACCCAGGGCGGCTCT
GCGCGGCCGAGCCGCCGGCGCGCCTCTTCGTCGGCAACGACGTCGCTGGC
ACGGGCTTCTGCCGCCGCGACACCAAGGCCGGCCGCTGGAGCAAGGTTCT
TTTGGTCAAGACCCACTACGCATGGGACGAGCCCGAGCTGCTGCCGTTCC
TCGACGAGCGCACCGCCGCCAACTACACTCACTTCACTTTTGCCAACTGC
GGCATCGTTGGCGGCCGCGGCGGTGCCGCGCCAGGGTACCTGGAGCGCGC
CGGCGACATCCTGCACCGCCGCGAGCGCCACGGGCTCATGCGCCCTGTCG
ACATGGTCATTGTCAACCACCTCGCCGCGTTTTGGCCCAACGGCACCGTT
TATGGCTTCCCGGAAGGTCCCGTCAACCTGCCGTTCCATCATGACTGCTC
GCAGACGCGCCCGCCCTGCGACTACGCGGCGCTGGAGGCGTCCGGCCGCT
TCTTCTTCTCCCACAAGTGAGGGAAGAAAAGGCGGCGGCGGCAGCAGCCA
TTGGTTCGGCGGTGTAACGGCGGAGTGTTGCTGCATGGGGAACGGCGGGC
CGGCGGCGGCGGCGGCTGAACATGTGCGACATCTTTGATCGTGTGTCATG
CCGTGGAGCACGTTCCACGTACGCAGTTCTTTTATCTATATGTTAAGGTT
ATAAATAACATGCTCCCTGGAGATTGCAAAGACAAAACGACGATGAGTGG
ATGCACGGACGCGAGAGGCGTGAACGCAGAGCACTTGCAATAGCTAGATT
GCCGCAGCAGGTGACAGAACGCAGGAGAAGCTGATTCTTAAACGGCTTCA
TAAGCTGCCGCCACTGCAGTGGCGGCGGGCAGTGACTCGTCGCTGGGCGA
CAGCCAAGCAGGAGCGGTGGACTTCTGTTATGGCTGCAATTTCGATTTCG
CTCCTGCTATGGCTGCCGCCCTGCGACCTCGTCACTTCTGTTATGGCTGC
AGGAGCGGTGGACTTCTGTTATGACTCTTCTCGACTGGACGCATGCGAGC
AAAACCGGCAATTGAATGACAGTAGCGACGAGGTCTTTTCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1751:1388..3179+

>mRNA_P-wetherbeei_contig1751.2.1 ID=mRNA_P-wetherbeei_contig1751.2.1|Name=mRNA_P-wetherbeei_contig1751.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig1751:1388..3179+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCATGTGGCGCTACCTCGTGCTCGTCGCCGTTGCCATTGCAACCGAT
CTGCCCCCGACGACGGTGCTCACCTCTTTCTTCGGCAGTTTTCCGCACAC
ACACATCAGCACAACCCATTTTCGCAACACCTATGTGCCCCATCCAACCG
CCGCCGATGCCATGGAGAAGCTCCAAGGACTCGTCGACTCTGTCGTGGCG
CTGCGCCGCTCCGAACGCGTCCCGCTCCGGCTCGTCGTGCTCCACGACAT
CCCCGGGCTGGCGGCGCTGGCGGACGACGCCTTTGAGTCAGTGGAGCTCG
GCCCGCGGGAGACGCAGCGCTACGCCGACGAATGGCCCTTCCTCGGCGTC
AACGACATGCGCTTCATCATCCAGCGCGACTACGCGCGGCGAAACCCTTT
CCGCGACGACGAGTGCGTCTTCCTCGTGGATGCCTCCGACGTCCGCATCC
TGCGGCACCCAGGGCGGCTCTGCGCGGCCGAGCCGCCGGCGCGCCTCTTC
GTCGGCAACGACGTCGCTGGCACGGGCTTCTGCCGCCGCGACACCAAGGC
CGGCCGCTGGAGCAAGGTTCTTTTGGTCAAGACCCACTACGCATGGGACG
AGCCCGAGCTGCTGCCGTTCCTCGACGAGCGCACCGCCGCCAACTACACT
CACTTCACTTTTGCCAACTGCGGCATCGTTGGCGGCCGCGGCGGTGCCGC
GCCAGGGTACCTGGAGCGCGCCGGCGACATCCTGCACCGCCGCGAGCGCC
ACGGGCTCATGCGCCCTGTCGACATGGTCATTGTCAACCACCTCGCCGCG
TTTTGGCCCAACGGCACCGTTTATGGCTTCCCGGAAGGTCCCGTCAACCT
GCCGTTCCATCATGACTGCTCGCAGACGCGCCCGCCCTGCGACTACGCGG
CGCTGGAGGCGTCCGGCCGCTTCTTCTTCTCCCACAAGTGAGGGAAGAAA
AGGCGGCGGCGGCAGCAGCCATTGGTTCGGCGGTGTAACGGCGGAGTGTT
GCTGCATGGGGAACGGCGGGCCGGCGGCGGCGGCGGCTGAACATGTGCGA
CATCTTTGA
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