mRNA_P-wetherbeei_contig17488.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17488.1.1
Unique NamemRNA_P-wetherbeei_contig17488.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17488.1.1 vs. uniprot
Match: A0A835YR94_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR94_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.990e-22
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 3 
Query:  126 ASAVDPFAFAKGKLSPSNFALFKTRTDLFVRGGINARNYYDTLETLFGKG-KGIDAAVPAVIKALPASKQSLLQQVYNGL 362
            A A DPFAFA+GKLS +N+ LF  RT LF RGGINARNYYDTLETLFGKG +G+ A +  V+ ALPASK  L++ VY GL
Sbjct:  991 AKAADPFAFAQGKLSAANYDLFVARTKLFARGGINARNYYDTLETLFGKGPRGVGATIGNVVNALPASKARLVEDVYKGL 1070
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BLAST of mRNA_P-wetherbeei_contig17488.1.1 vs. uniprot
Match: D7G5E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E7_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.560e-19
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 3 
Query:  132 AVDPFAFAKGKLSPSNFALFKTRTDLFVRGGINARNYYDTLETLFGKGKGIDAAVPAVIKALPASKQSLLQQVYNGL 362
            A DP+AFA  K+S  ++ LFKTRT L+ RGGINARNYYDTL T+FG  KG+ A +PA++KALP +K+ LLQ V +GL
Sbjct:  926 AADPYAFAAAKISGKDYELFKTRTTLYARGGINARNYYDTLATVFG-AKGVSAQLPALLKALPQNKRKLLQDVVDGL 1001
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YR94_9STRA1.990e-2266.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G5E7_ECTSI1.560e-1961.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17488contigP-wetherbeei_contig17488:41..858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size818
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.4148936-CDS-P-wetherbeei_contig17488:40..4511683186118.4148936-CDS-P-wetherbeei_contig17488:40..451Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17488 41..451 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.422954-UTR-P-wetherbeei_contig17488:451..8581683186118.422954-UTR-P-wetherbeei_contig17488:451..858Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17488 452..858 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17488.1.1prot_P-wetherbeei_contig17488.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17488 41..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17488.1.1

>prot_P-wetherbeei_contig17488.1.1 ID=prot_P-wetherbeei_contig17488.1.1|Name=mRNA_P-wetherbeei_contig17488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
RPSRRRPRPRPRQRRRRSVACSGSASRAAAPPPRGRRRPTPARPQWTLLR
SLRASCRRLISRSSRRARIFSSGAESTRGTTMTRWRHSLARARALTQPCQ
RSSRLCRPVSSRSCSRSTTACGDGHRRAGRRNWWRR*
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mRNA from alignment at P-wetherbeei_contig17488:41..858+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17488.1.1 ID=mRNA_P-wetherbeei_contig17488.1.1|Name=mRNA_P-wetherbeei_contig17488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=818bp|location=Sequence derived from alignment at P-wetherbeei_contig17488:41..858+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCAAGCCGGCGGCGCCCGCGCCCGCGTCCGCGCCAGCGCCGTCGCCG
TTCGGTGGCATGTTCGGGTTCGGCAAGTCGAGCGGCGGCGCCGCCGCCAA
GGGGGCGGCGACGGCCGACGCCGGCGCGTCCGCAGTGGACCCTTTTGCGT
TCGCTAAGGGCAAGCTGTCGCCGTCTAATTTCGCGCTCTTCAAGACGCGC
ACGGATCTTTTCGTCCGGGGCGGAATCAACGCGCGGAACTACTATGACAC
GCTGGAGACACTCTTTGGCAAGGGCAAGGGCATTGACGCAGCCGTGCCAG
CGGTCATCAAGGCTCTGCCGGCCAGTAAGCAGTCGCTCCTGCAGCAGGTC
TACAACGGCCTGCGGTGACGGGCACCGTCGCGCGGGCCGGCGGAATTGGT
GGCGCCGATAGCGAGGGGAGAAGGGGAAGGATCTTGCGGCTGCAGGAGCG
GCGACAGAGAGCAGCGGCGGCAGCGGCGACGGCGGTTACTGGTGGGCAAT
ATGGTTGCGTTGGCGTCAACGGCTTGCCCTTTACGCGGAGATTGCTTAAT
GCTGGCGAGCGACGGCGACAGCGGAGAGCAGCGGCTAGTGGCAACCGTCG
GACGAAGTGCACGCAGTGCTGCTGGACTGAGGCAGCAGTCGACAACACAG
GAATTAGTCAGGAGCAGGCGGCGGCTCGCTGGCCGAACCGAGTGGCCCGC
TCGGTGCATCGGCGATGGCGGCAGTGGTGACGGCTGCGACGGCCGCTGTG
GCTGCAGCATTGTCTGGTGAGACGGGAAAGGAACGTTAGAAAAGAAAGAA
AATGATGATCTGATTGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17488:41..858+

>mRNA_P-wetherbeei_contig17488.1.1 ID=mRNA_P-wetherbeei_contig17488.1.1|Name=mRNA_P-wetherbeei_contig17488.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17488:41..858+ (Phaeothamnion wetherbeei SAG_119_79)
CGTCCAAGCCGGCGGCGCCCGCGCCCGCGTCCGCGCCAGCGCCGTCGCCG
TTCGGTGGCATGTTCGGGTTCGGCAAGTCGAGCGGCGGCGCCGCCGCCAA
GGGGGCGGCGACGGCCGACGCCGGCGCGTCCGCAGTGGACCCTTTTGCGT
TCGCTAAGGGCAAGCTGTCGCCGTCTAATTTCGCGCTCTTCAAGACGCGC
ACGGATCTTTTCGTCCGGGGCGGAATCAACGCGCGGAACTACTATGACAC
GCTGGAGACACTCTTTGGCAAGGGCAAGGGCATTGACGCAGCCGTGCCAG
CGGTCATCAAGGCTCTGCCGGCCAGTAAGCAGTCGCTCCTGCAGCAGGTC
TACAACGGCCTGCGGTGACGGGCACCGTCGCGCGGGCCGGCGGAATTGGT
GGCGCCGATAG
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