mRNA_P-wetherbeei_contig1748.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1748.3.1
Unique NamemRNA_P-wetherbeei_contig1748.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1748.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1748contigP-wetherbeei_contig1748:3751..5415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size882
Hectar predicted targeting categoryother localisation
Exons3
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.332425-UTR-P-wetherbeei_contig1748:3750..39241683186118.332425-UTR-P-wetherbeei_contig1748:3750..3924Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1748 3751..3924 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186118.3433905-CDS-P-wetherbeei_contig1748:3924..40291683186118.3433905-CDS-P-wetherbeei_contig1748:3924..4029Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1748 3925..4029 +
1683186118.3507314-CDS-P-wetherbeei_contig1748:4123..44371683186118.3507314-CDS-P-wetherbeei_contig1748:4123..4437Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1748 4124..4437 +
1683186118.3579671-CDS-P-wetherbeei_contig1748:5126..54151683186118.3579671-CDS-P-wetherbeei_contig1748:5126..5415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1748 5127..5415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1748.3.1prot_P-wetherbeei_contig1748.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1748 3925..5415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1748.3.1

>prot_P-wetherbeei_contig1748.3.1 ID=prot_P-wetherbeei_contig1748.3.1|Name=mRNA_P-wetherbeei_contig1748.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MVTALPPLPGHRCHCCTDSNTTAQHRPERREKEILELASVRLGISHIRKS
ARSARPPQWPCKRWSEGAPCRARGANPPVRCPELAMELSVVFPLIEQFEE
NLALFERSPFRPTDPSTRRPFLGSTQSRSTQPSLRTPSRRHSTTIQLRAG
SRRPRQLAWPRRSRPPSRPPAQQQAHVGTARQQKMADPPSRRAPISAGLA
SSRTRASVSAGTTNVHTTLPLLQLVKELILQLPGKA
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mRNA from alignment at P-wetherbeei_contig1748:3751..5415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1748.3.1 ID=mRNA_P-wetherbeei_contig1748.3.1|Name=mRNA_P-wetherbeei_contig1748.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1665bp|location=Sequence derived from alignment at P-wetherbeei_contig1748:3751..5415+ (Phaeothamnion wetherbeei SAG_119_79)
ATAAGAATGTTGAATATGCTCGTGAGCTATCGCGGGCTCCCAGCGACGAG
GATCTGCGCGCGGCAAATAGCCAGCACTGTGTGACGAATATTTTCTATTT
TCATTTGCGGGGAATAATATCGATACTGTAATGGGGGGAGCAACTATTCC
ACCACGTATTACGTCGCATGCTCCATGGTAACAGCGCTGCCGCCGCTGCC
CGGCCATAGGTGCCATTGCTGCACTGACTCGAACACTACGGCACAACACC
GACCCGAGAGAAGGGAGAAGGAGATTTTGGTAAGCAGCAATTATTTCGAA
GGTTTCTGAATGAAGAGGAATTAATTATCGCGTCCTGAAACGCGTCTTCC
ACGCTTCCTTGGTTTCGGACCAGGAGTTGGCATCCGTGAGGCTCGGGATT
TCCCACATACGCAAGAGCGCCCGTAGCGCCAGGCCGCCGCAGTGGCCCTG
TAAGCGCTGGAGCGAGGGCGCACCCTGTCGTGCTCGCGGCGCCAATCCTC
CTGTGCGATGCCCCGAGCTAGCAATGGAATTGAGCGTGGTATTCCCGCTC
ATCGAACAATTCGAGGAAAACCTGGCCTTGTTCGAACGCTCACCTTTCCG
ACCGACCGACCCTTCGACCCGTCGACCCTTCCTGGGTTCGACCCAATCGC
GGTCGACCCAACCCAGTCTTCGGACCCCTTCGCGCCGGTGAGCCTACCGA
TGTCGACCCATAATATCGTCTCGGCATTTTTACACGGCCCCCGTGCCGAC
CATCCCCGACTTGGTGACCCCGGACCCTTAGCGTTTCATCAAAATGGAAC
CCCTCAAACCGGTACAATACGCCGCTCTACTCCCAAATTTCCCGCTTACA
CGAACCAATTGGGAAGCGTGGTCTTTTCACGTCCTTGCGGCCTCCGTATC
CGTGGGACTCCTCGAATTTGTCACCGGAGATTTGACCATTTATCACATTG
ATCCAGACGACATGCTCCCACCACCATATTAAAGCCCTCCAGAGGGAGAA
AAAGCAATGGCGCTTTCCTCTGGGCAAAGCTTGTGGAATCCCACAGCCGC
CCTTCTGCCACCCTTGGCAATATGGCCTCGAGAAATATTTGGGATGTTAT
CCTTAACCCGTCCGACAACCCAACCGTTTACTCAAACGCCATTGACTACC
TCCGTTATGTCGCAACTGACACGCTCAACACACGCCCACCGGGGAAACGA
TTACCCGGCTTTTATGAATCAAATTCAAGCAATAAATAACAATCCCCGCG
GTTTATCCGCCGCTGATGTACGAACTTTAACAAAATTTTCCGTCGATTGG
CAAGCTGACCCTTTCCTTGGCCTCGCAAATGACGTCTTTCGACGCCATCC
TTCTCCATGCCCGCCAAATCTACCAGGCATAGCACAACAATACAGCTGCG
GGCAGGCAGCAGGCGTCCGCGTCAGCTGGCCTGGCCTCGTCGGAGCCGGC
CGCCGTCCCGGCCACCGGCACAGCAGCAGGCGCACGTGGGAACTGCCCGG
CAACAAAAAATGGCCGACCCACCAAGCCGAAGAGCCCCCATTTCGGCTGG
TCTCGCGTCGAGCCGGACGCGAGCAAGTGTCTCCGCTGGAACAACCAATG
TCCACACAACACTTCCACTGCTGCAACTGGTAAAAGAACTAATTCTGCAG
CTACCCGGAAAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1748:3751..5415+

>mRNA_P-wetherbeei_contig1748.3.1 ID=mRNA_P-wetherbeei_contig1748.3.1|Name=mRNA_P-wetherbeei_contig1748.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig1748:3751..5415+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAACAGCGCTGCCGCCGCTGCCCGGCCATAGGTGCCATTGCTGCAC
TGACTCGAACACTACGGCACAACACCGACCCGAGAGAAGGGAGAAGGAGA
TTTTGGAGTTGGCATCCGTGAGGCTCGGGATTTCCCACATACGCAAGAGC
GCCCGTAGCGCCAGGCCGCCGCAGTGGCCCTGTAAGCGCTGGAGCGAGGG
CGCACCCTGTCGTGCTCGCGGCGCCAATCCTCCTGTGCGATGCCCCGAGC
TAGCAATGGAATTGAGCGTGGTATTCCCGCTCATCGAACAATTCGAGGAA
AACCTGGCCTTGTTCGAACGCTCACCTTTCCGACCGACCGACCCTTCGAC
CCGTCGACCCTTCCTGGGTTCGACCCAATCGCGGTCGACCCAACCCAGTC
TTCGGACCCCTTCGCGCCGGCATAGCACAACAATACAGCTGCGGGCAGGC
AGCAGGCGTCCGCGTCAGCTGGCCTGGCCTCGTCGGAGCCGGCCGCCGTC
CCGGCCACCGGCACAGCAGCAGGCGCACGTGGGAACTGCCCGGCAACAAA
AAATGGCCGACCCACCAAGCCGAAGAGCCCCCATTTCGGCTGGTCTCGCG
TCGAGCCGGACGCGAGCAAGTGTCTCCGCTGGAACAACCAATGTCCACAC
AACACTTCCACTGCTGCAACTGGTAAAAGAACTAATTCTGCAGCTACCCG
GAAAGGCC
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