mRNA_P-wetherbeei_contig17438.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17438.1.1
Unique NamemRNA_P-wetherbeei_contig17438.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A6H5JAL6_9PHAE (AAA_5 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAL6_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 4.710e-52
Identity = 98/149 (65.77%), Postives = 115/149 (77.18%), Query Frame = 1
Query:  127 ASVMEELRR-QRDAVL--ALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQA 564
            A  +EEL   QR+ VL   L  R  GLFEW DGPLVTAM++G+ +LLDELSLA+DAVLERLNSVLEPGRS+TLAEKGGE      G+ G  G    + AAPGFR+ ATMNPGGDFGKRELSPALRSRFTE+WVPA++DR+D   V+ +A
Sbjct:  123 ADQLEELSGLQRELVLLKTLAVRTKGLFEWVDGPLVTAMRKGELILLDELSLADDAVLERLNSVLEPGRSITLAEKGGE------GAVGGHGAAETVVAAPGFRVMATMNPGGDFGKRELSPALRSRFTEVWVPALSDREDMEGVVQKA 265          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 5.910e-50
Identity = 97/154 (62.99%), Postives = 118/154 (76.62%), Query Frame = 1
Query:  112 PPPDSASVMEE---LRRQRDAVLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQA 564
            P P  ++ +EE   L R+  ++ AL  R  GLFEW DGPLVTAM++G+ +LLDELSLAEDAVLERLNSVLEPGRS+TLAEKGG+      G+ G  G    + AAPGFR+ ATMNPGGDFGKRELSPALRSRFTE+WVPA++DR+D   V+ +A
Sbjct:  913 PTPGESTGLEEQYALEREFVSLKALAVRTKGLFEWVDGPLVTAMRKGELILLDELSLAEDAVLERLNSVLEPGRSITLAEKGGK------GAVGGEGAAEAVVAAPGFRVMATMNPGGDFGKRELSPALRSRFTEVWVPALSDREDMEGVVQKA 1060          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.410e-44
Identity = 88/124 (70.97%), Postives = 100/124 (80.65%), Query Frame = 1
Query:  196 LFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQAL 567
            LFEW DGPLVTAM+RG+ LLLDE+SLAEDAVLERLNSVLEPGRSLTLAEKGG ++GG  G   D+     + A PGFR+ ATMNPGGD+GKRELSPALRSRFTEIWVP +  R D  +V+L  L
Sbjct: 1703 LFEWCDGPLVTAMRRGEVLLLDEISLAEDAVLERLNSVLEPGRSLTLAEKGGGSEGGREGEGDDS----HVVAVPGFRLLATMNPGGDYGKRELSPALRSRFTEIWVPPLRARADVSSVVLSVL 1822          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A7R9VD21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VD21_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.820e-44
Identity = 86/131 (65.65%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  196 LFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEAD-----GGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQALMA 573
            LFEW DGPLV+AM+ G  LLLDE+SLAEDAVLERLNSVLEP R L LAEKGG+ D        G  +  +  G  I A   FRIFATMNPGGDFGKRELSPALRSRFTEIWVP+V  R D   VL + L A
Sbjct:    6 LFEWADGPLVSAMRDGHLLLLDEMSLAEDAVLERLNSVLEPSRLLVLAEKGGDTDLTTNVEARGERSFSSNGGSEIHAKENFRIFATMNPGGDFGKRELSPALRSRFTEIWVPSVTGRTDVNVVLERTLSA 136          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: S7RP33_GLOTA (AAA_5 domain-containing protein (Fragment) n=1 Tax=Gloeophyllum trabeum (strain ATCC 11539 / FP-39264 / Madison 617) TaxID=670483 RepID=S7RP33_GLOTA)

HSP 1 Score: 147 bits (370), Expect = 2.340e-42
Identity = 74/121 (61.16%), Postives = 94/121 (77.69%), Query Frame = 1
Query:  196 LFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPI-RAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVL 555
            LFEW DGPLV AM++GD +LLDE+SLA+D+VLERLNSVLEPGR++ LAEKGGE             +  P+ +AA GF++ ATMNPGGD+GK+ELSPALR+RFTEIWVP V++R D   ++
Sbjct:    1 LFEWVDGPLVQAMRQGDAMLLDEISLADDSVLERLNSVLEPGRTIVLAEKGGED------------IDQPVVKAAEGFKLVATMNPGGDYGKKELSPALRNRFTEIWVPPVSERRDLEQII 109          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A7S3VEM6_9STRA (Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA)

HSP 1 Score: 160 bits (406), Expect = 3.670e-42
Identity = 89/146 (60.96%), Postives = 104/146 (71.23%), Query Frame = 1
Query:  136 MEELRRQRDAVLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQALMA 573
            +E+L++Q D V  L  +   LFEW DGPLV AM++GD  LLDE+SLAEDAVLERLNSVLEP R+L LAEKGG+          D+     I+A   FR+FATMNPGGDFGKRELSPALRSRFTEIWVP+V D  D   VL Q + A
Sbjct: 1671 LEKLKKQLDEVDKLFQQHASLFEWVDGPLVDAMKKGDLFLLDEMSLAEDAVLERLNSVLEPSRTLVLAEKGGDLS-----VDEDSSDNTEIKAHENFRVFATMNPGGDFGKRELSPALRSRFTEIWVPSVTDLGDIDLVLGQTMNA 1811          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A8K0NR06_9TREE (Uncharacterized protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=A0A8K0NR06_9TREE)

HSP 1 Score: 160 bits (405), Expect = 4.900e-42
Identity = 87/146 (59.59%), Postives = 104/146 (71.23%), Query Frame = 1
Query:  124 SASVMEELRRQRDAVLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQ 561
            S   ME LR+ R       ++C+ LFEW DGPLV AMQ+G  LLLDELSLA+D+VLERLNSVLEP ++L LAEKGG           DA V   ++ APGF+I ATMNPGGDFGK+ELSPALR+RFTEIWVPA+ D DD   ++ Q
Sbjct: 1592 SVDEMEHLRKIR----LEASQCEALFEWHDGPLVHAMQQGGILLLDELSLADDSVLERLNSVLEPSKTLVLAEKGGS----------DADV---VKGAPGFQIVATMNPGGDFGKKELSPALRNRFTEIWVPAITDYDDLYQIMDQ 1720          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A7R9UB68_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB68_9STRA)

HSP 1 Score: 153 bits (387), Expect = 4.920e-42
Identity = 89/152 (58.55%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  118 PDSASVMEELRRQRDA-VLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEK-GGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQAL 567
            PD  S   +L+ +R A   A      GLFEW DGPL  AM+ G+F+LLDE+SLAEDAVLERLNSVLEP R LTLAE+ G +A  G GG   +      + A   FR+ ATMNPGGDFGKRELSPALRSRFTEIWVPA+ +R D   V+  AL
Sbjct:   66 PDRTSEKMDLQPERAADENAESPATKGLFEWVDGPLTRAMRCGEFVLLDEISLAEDAVLERLNSVLEPSRRLTLAERVGSDASAGGGGQGAE-----EVSAHADFRLLATMNPGGDFGKRELSPALRSRFTEIWVPALVERADLEMVVTSAL 212          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.740e-41
Identity = 92/151 (60.93%), Postives = 105/151 (69.54%), Query Frame = 1
Query:  121 DSASVMEELR--RQRDAVLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQAL 567
            ++  ++ +LR  R R+A+ A   R +G   WQDGPLV AM+ GD LLLDELSLAEDAVLERLNSVLEP R L LAEKGG   G              I AAPGFRI ATMNPGGDFGKRELSPALRSRFTEIWVP ++  +D  AVL + L
Sbjct: 1087 EAGDLLGQLRPLRAREALEA-ALREEGAAFWQDGPLVAAMREGDLLLLDELSLAEDAVLERLNSVLEPSRRLVLAEKGGGQRGAE-----------EIVAAPGFRILATMNPGGDFGKRELSPALRSRFTEIWVPPMSLAEDVEAVLAKML 1225          
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Match: A0A7S2Y6W7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6W7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.040e-40
Identity = 86/146 (58.90%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  139 EELRRQRDAVLA---LCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERLNSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNPGGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQAL 567
            EE+ R ++       L  + + LFEW DGPLV AM+ G+ +LLDE+SLAEDAVLERLNSVLEPGR+L LAEKG  +DG            G I A   F++FATMNPGGDFGKRELSPALRSRFTEIWVP V D  D   VL + L
Sbjct:  155 EEMNRMQELFTEMENLNKKYNSLFEWSDGPLVQAMRNGEMILLDEMSLAEDAVLERLNSVLEPGRTLVLAEKGVTSDG----------ENGLIVADDSFQLFATMNPGGDFGKRELSPALRSRFTEIWVPPVEDMTDIELVLQECL 290          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17438.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAL6_9PHAE4.710e-5265.77AAA_5 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FL28_ECTSI5.910e-5062.99Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A4D9D334_9STRA1.410e-4470.97VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7R9VD21_9STRA2.820e-4465.65Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
S7RP33_GLOTA2.340e-4261.16AAA_5 domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S3VEM6_9STRA3.670e-4260.96Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
A0A8K0NR06_9TREE4.900e-4259.59Uncharacterized protein n=1 Tax=Filobasidium flori... [more]
A0A7R9UB68_9STRA4.920e-4258.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835Z947_9STRA7.740e-4160.93P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S2Y6W7_9STRA1.040e-4058.90Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17438contigP-wetherbeei_contig17438:855..1430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL28
PFAMsAAA_5
Model size576
Max annot lvl2759|Eukaryota
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.69e-51
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size576
COG categoryM
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.6166012-CDS-P-wetherbeei_contig17438:854..14301683186117.6166012-CDS-P-wetherbeei_contig17438:854..1430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17438 855..1430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17438.1.1prot_P-wetherbeei_contig17438.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17438 855..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17438.1.1

>prot_P-wetherbeei_contig17438.1.1 ID=prot_P-wetherbeei_contig17438.1.1|Name=mRNA_P-wetherbeei_contig17438.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=192bp
TVAAAATEEAAVRAAAGMNGHSEGQGMPGVAHGAPAMPPPDSASVMEELR
RQRDAVLALCARCDGLFEWQDGPLVTAMQRGDFLLLDELSLAEDAVLERL
NSVLEPGRSLTLAEKGGEADGGAGGSAGDAGVGGPIRAAPGFRIFATMNP
GGDFGKRELSPALRSRFTEIWVPAVADRDDTRAVLLQALMAR
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mRNA from alignment at P-wetherbeei_contig17438:855..1430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17438.1.1 ID=mRNA_P-wetherbeei_contig17438.1.1|Name=mRNA_P-wetherbeei_contig17438.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig17438:855..1430+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTCGCAGCTGCCGCAACTGAGGAAGCGGCCGTCCGAGCGGCGGCCGG CATGAATGGCCACTCAGAAGGTCAGGGCATGCCAGGGGTTGCGCATGGCG CGCCTGCTATGCCGCCGCCGGACAGCGCTTCGGTGATGGAGGAGCTTCGG CGGCAGCGGGACGCCGTGCTGGCGCTGTGCGCCCGCTGCGATGGGCTGTT TGAGTGGCAGGACGGGCCCCTTGTCACGGCGATGCAGCGCGGCGACTTTC TACTGCTGGACGAGCTCTCGCTGGCGGAGGACGCCGTGCTGGAGCGTCTC AACTCGGTACTGGAGCCGGGACGGTCGCTGACGCTGGCAGAGAAGGGCGG CGAGGCGGATGGCGGGGCCGGTGGCAGTGCCGGTGACGCCGGCGTCGGGG GGCCGATTCGGGCGGCGCCGGGCTTCCGCATCTTTGCGACGATGAACCCG GGCGGCGACTTCGGCAAGCGGGAGCTGTCGCCGGCGCTGCGGTCCCGCTT CACGGAGATTTGGGTGCCGGCGGTGGCAGACCGCGACGACACCAGGGCAG TGCTGCTGCAGGCGCTTATGGCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17438:855..1430+

>mRNA_P-wetherbeei_contig17438.1.1 ID=mRNA_P-wetherbeei_contig17438.1.1|Name=mRNA_P-wetherbeei_contig17438.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=576bp|location=Sequence derived from alignment at P-wetherbeei_contig17438:855..1430+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGTCGCAGCTGCCGCAACTGAGGAAGCGGCCGTCCGAGCGGCGGCCGG
CATGAATGGCCACTCAGAAGGTCAGGGCATGCCAGGGGTTGCGCATGGCG
CGCCTGCTATGCCGCCGCCGGACAGCGCTTCGGTGATGGAGGAGCTTCGG
CGGCAGCGGGACGCCGTGCTGGCGCTGTGCGCCCGCTGCGATGGGCTGTT
TGAGTGGCAGGACGGGCCCCTTGTCACGGCGATGCAGCGCGGCGACTTTC
TACTGCTGGACGAGCTCTCGCTGGCGGAGGACGCCGTGCTGGAGCGTCTC
AACTCGGTACTGGAGCCGGGACGGTCGCTGACGCTGGCAGAGAAGGGCGG
CGAGGCGGATGGCGGGGCCGGTGGCAGTGCCGGTGACGCCGGCGTCGGGG
GGCCGATTCGGGCGGCGCCGGGCTTCCGCATCTTTGCGACGATGAACCCG
GGCGGCGACTTCGGCAAGCGGGAGCTGTCGCCGGCGCTGCGGTCCCGCTT
CACGGAGATTTGGGTGCCGGCGGTGGCAGACCGCGACGACACCAGGGCAG
TGCTGCTGCAGGCGCTTATGGCGCGC
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