mRNA_P-wetherbeei_contig17431.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17431.1.1
Unique NamemRNA_P-wetherbeei_contig17431.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1H0PW31_9BRAD (Transcriptional regulator, IclR family n=5 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0PW31_9BRAD)

HSP 1 Score: 447 bits (1149), Expect = 2.200e-156
Identity = 236/272 (86.76%), Postives = 252/272 (92.65%), Query Frame = 2
Query:  134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            MAAIS++DPS  SR KA  +  DPAFATTLAHGLDVLAAFR+++GS SNADLALHTGLSRPTVSRL+YTLE+LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQ+ARPL+R+FAAY GGTVSIAMPFGLDFIYVET+RTTDAV H+PDVGFTGTLAT+AVGRAL SL T EE AAYVA VKAERPEEA+YV TR LPDIELCKERGFAVSLGEWRREIFGVAAPLYRT +GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct:    1 MAAISSVDPS--SRAKAPEDHADPAFATTLAHGLDVLAAFRNRTGSLSNADLALHTGLSRPTVSRLSYTLEQLGYLKRDAKGRFELGLGVLAAAYPVLSALKVRQVARPLIREFAAYTGGTVSIAMPFGLDFIYVETVRTTDAVAHLPDVGFTGTLATTAVGRALLSLFTTEEQAAYVADVKAERPEEADYVQTRMLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTPSGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 270          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1H1U409_9BRAD (Transcriptional regulator, IclR family n=2 Tax=Bradyrhizobium canariense TaxID=255045 RepID=A0A1H1U409_9BRAD)

HSP 1 Score: 439 bits (1130), Expect = 1.780e-153
Identity = 228/260 (87.69%), Postives = 239/260 (91.92%), Query Frame = 2
Query:  170 SRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            SR+K A +  DP+FATTLAHGLDVLA FR+  GS SNADLALHTGLSRPTVSRLTYTL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPH+PDVGFTG+LAT+AVGRAL SLSTPEEL  YV T + ERP+E EYV TRTLPDIELCKERGFA+SLGEWRREIFGVAAPLYRT  GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct:   12 SRSKMAGDQTDPSFATTLAHGLDVLATFRNSPGSLSNADLALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHIPDVGFTGSLATTAVGRALLSLSTPEELELYVQTTRTERPDEIEYVRTRTLPDIELCKERGFAISLGEWRREIFGVAAPLYRTPAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 271          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001BAB1856 (IclR family transcriptional regulator n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAB1856)

HSP 1 Score: 436 bits (1121), Expect = 4.020e-152
Identity = 230/272 (84.56%), Postives = 246/272 (90.44%), Query Frame = 2
Query:  134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            MAA+ST+DPS   RT    +  DPAFATTLAHGLDVLAAFR++SGS SNADLALHTGLSRPTVSRLTYTL +LGYLKRDAKGRF+LGLG LAAAYPVLSALKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAV H+PDVGF  +LA +AVGRAL SL T EEL AYVA VKAERPEEA+YV  RTLPD+ELCKERGFA+SLGEWRREIFGVAAPLYRTA+GD LSVNCGIPSFRF+AEQIEREC PR+LGLARSIRSLVAN
Sbjct:    1 MAALSTVDPSTRPRTPE--DHADPAFATTLAHGLDVLAAFRNRSGSLSNADLALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFQLGLGILAAAYPVLSALKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVTHLPDVGFASSLAPTAVGRALLSLFTKEELDAYVAGVKAERPEEADYVQARTLPDVELCKERGFAISLGEWRREIFGVAAPLYRTASGDCLSVNCGIPSFRFNAEQIERECAPRMLGLARSIRSLVAN 270          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A1M5LMW5_9BRAD (Transcriptional regulator, IclR family n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5LMW5_9BRAD)

HSP 1 Score: 433 bits (1113), Expect = 7.390e-151
Identity = 226/261 (86.59%), Postives = 242/261 (92.72%), Query Frame = 2
Query:  170 SRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVANS 952
            SR++AA +  DP+FATTLAHGLD+LAAFR+ SGS SNADLAL TGLSRPTVSRLT+TL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQ+ARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLAT+AVGRAL SLST +EL  YV +VKAERP+E EYV  RTLPDIELC+ERGFA+SLGEWRREIFGVAAPLYRTA GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N+
Sbjct:   14 SRSRAAGDPSDPSFATTLAHGLDLLAAFRNGSGSLSNADLALQTGLSRPTVSRLTHTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQMARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATTAVGRALLSLSTEDELQRYVQSVKAERPDELEYVEARTLPDIELCRERGFALSLGEWRREIFGVAAPLYRTAAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVDNN 274          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001C01C656 (IclR family transcriptional regulator n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C01C656)

HSP 1 Score: 427 bits (1097), Expect = 1.570e-148
Identity = 223/263 (84.79%), Postives = 237/263 (90.11%), Query Frame = 2
Query:  161 SPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            S  +R KA  +  DP+FATTLAHGLDVLAAFR+ +GS SNADLA  TGLSRPTVSRLT+TL +LGYLKRDAKGRFELGLG LAAAYPVLSALKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGT+AT+AVGRAL SL T +EL AY+  VKAERPEE +YV +RTLPD+ELCKERGFAVSLGEWRREIFGVAAPLYRT  GD LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N
Sbjct:    4 SAATRPKAEADQNDPSFATTLAHGLDVLAAFRNSTGSLSNADLAASTGLSRPTVSRLTHTLAQLGYLKRDAKGRFELGLGILAAAYPVLSALKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTMATTAVGRALLSLYTKDELQAYLQAVKAERPEELKYVQSRTLPDMELCKERGFAVSLGEWRREIFGVAAPLYRTPAGDCLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVTN 266          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: UPI001BA6B0AD (IclR family transcriptional regulator n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=UPI001BA6B0AD)

HSP 1 Score: 417 bits (1073), Expect = 5.880e-145
Identity = 219/256 (85.55%), Postives = 231/256 (90.23%), Query Frame = 2
Query:  182 AAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            AA    DP+FATTLAHGLDVLAAFR+ +GS SNA+LA HTGLSRPTVSRLTYTLE+LGYLKRD KGRF LGLG LAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGF  +LA +AVGR+L SL T EEL  YVA VKAERP+E +YV  RTLPDIELCKERGFA+SLGEWRREIFGVAAPLYRT  G+ LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN
Sbjct:    6 AAETQADPSFATTLAHGLDVLAAFRNHAGSLSNAELAHHTGLSRPTVSRLTYTLEQLGYLKRDTKGRFLLGLGVLAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFVSSLAPTAVGRSLLSLFTREELDGYVARVKAERPDEYDYVQRRTLPDIELCKERGFAISLGEWRREIFGVAAPLYRTPNGECLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 261          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A0R3MBE3_9BRAD (Uncharacterized protein n=12 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MBE3_9BRAD)

HSP 1 Score: 414 bits (1065), Expect = 1.440e-143
Identity = 218/272 (80.15%), Postives = 236/272 (86.76%), Query Frame = 2
Query:  134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            MA  S    S  SR     +  DP+FATTLAHGLDVLAAFR++  S SNA+LALHTGLSRPTVSRLTYTL +LGYLKRDAKGRF+LGLG LAAAYPVLSALKVRQLARPLMR+FAAY GGTVSIAMPFGLDFIYVETLRTTDAV H+PDVGF  +LA +AVGRAL SL T EEL AYV  VK+ERPEEA+YV  RTLPD+ELCKERGFA+SLGEWRREIFGVAAPLYRT +GD LSVNCGIPSFRF+AEQIERECGPR+LGLARSIRSLV N
Sbjct:    1 MAVKSLTHSSAASRAGEPEDQADPSFATTLAHGLDVLAAFRNRGDSLSNAELALHTGLSRPTVSRLTYTLAQLGYLKRDAKGRFQLGLGILAAAYPVLSALKVRQLARPLMREFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVAHLPDVGFASSLAPTAVGRALLSLFTEEELDAYVVAVKSERPEEADYVERRTLPDVELCKERGFAISLGEWRREIFGVAAPLYRTPSGDCLSVNCGIPSFRFNAEQIERECGPRMLGLARSIRSLVTN 272          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A0R3D5X1_9BRAD (Uncharacterized protein n=21 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3D5X1_9BRAD)

HSP 1 Score: 414 bits (1063), Expect = 1.950e-143
Identity = 213/248 (85.89%), Postives = 226/248 (91.13%), Query Frame = 2
Query:  200 DPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV 943
            DP+FATTLAHGLDVLAAFR   GS SNA+LALHTGLSRPTVSRLTYTLE+LGYL+RD KGRF LGLGALAAAYPVLSALKVRQLARPLMRDFA YAGGTVSIAMPFG+DFIYVETLRTTD  PHVPDVGF  TLA +AVGRAL SL T +EL AYVA VKAERP+E +YV  RTLPDIELC+ERGFAVSLGEWRREIFGVAAPLYRT TG+ LSVNCG+PSFRFSAEQIERECGPRILGLARSIR+LV
Sbjct:   12 DPSFATTLAHGLDVLAAFRRHPGSLSNAELALHTGLSRPTVSRLTYTLEQLGYLRRDTKGRFVLGLGALAAAYPVLSALKVRQLARPLMRDFATYAGGTVSIAMPFGIDFIYVETLRTTDTAPHVPDVGFVSTLAPTAVGRALLSLFTEDELGAYVARVKAERPDEFDYVQKRTLPDIELCRERGFAVSLGEWRREIFGVAAPLYRTPTGECLSVNCGVPSFRFSAEQIERECGPRILGLARSIRALV 259          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A560MFR7_9BRAD (IclR family transcriptional regulator n=20 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A560MFR7_9BRAD)

HSP 1 Score: 412 bits (1060), Expect = 5.590e-143
Identity = 219/272 (80.51%), Postives = 234/272 (86.03%), Query Frame = 2
Query:  134 MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVAN 949
            MAA+S+++P             DP+FATTLAHGLDVLAAFR+ +G  SNA+LA HTGLSRPTVSRLTYTLE+LGYL+RD KGRF LGLG LAAAYPVLS+LKVRQLARPLMRDFAAY GGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGF  +LA +AVGRAL SL T EE  AYVA VKAERPEE +YV  RTLPDIELC ERGFAVSLGEWRREIFGVAAPLYRT  G+ LSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV N
Sbjct:    1 MAALSSLEPQT-----------DPSFATTLAHGLDVLAAFRNHAGPLSNAELAEHTGLSRPTVSRLTYTLEQLGYLRRDPKGRFVLGLGVLAAAYPVLSSLKVRQLARPLMRDFAAYTGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFVSSLAPTAVGRALLSLFTKEERDAYVARVKAERPEELDYVERRTLPDIELCNERGFAVSLGEWRREIFGVAAPLYRTPAGECLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLVTN 261          
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Match: A0A109J763_9BRAD (Uncharacterized protein n=1 Tax=Bradyrhizobium macuxiense TaxID=1755647 RepID=A0A109J763_9BRAD)

HSP 1 Score: 409 bits (1051), Expect = 1.310e-141
Identity = 211/248 (85.08%), Postives = 226/248 (91.13%), Query Frame = 2
Query:  200 DPAFATTLAHGLDVLAAFRSQSGSRSNADLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSALKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDVGFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDIELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQIERECGPRILGLARSIRSLV 943
            DP+FATTLAHGLDVLAAFR  S   SNA+LA+HTGLSRPTVSRLTYTLE+LGYL+RDAKGRF LGLG LAAAYPVL++LKVRQLARPLMRDFA YAGGTVSIAMPFGLDFIYVETLRTTDA PHVPDVGF  +LA +AVGRAL SL T +EL  YVA VKAERPEE +YV TRTLPDIELC+ERGFAVSLGEWRREIFGVAAPLYRT TG+ LSVNCG+PSFRFSAEQIERECGPRILGLARSIR+LV
Sbjct:   12 DPSFATTLAHGLDVLAAFRRHSSPLSNAELAVHTGLSRPTVSRLTYTLEQLGYLRRDAKGRFVLGLGMLAAAYPVLASLKVRQLARPLMRDFATYAGGTVSIAMPFGLDFIYVETLRTTDAAPHVPDVGFVSSLAPTAVGRALLSLFTADELDGYVARVKAERPEELDYVQTRTLPDIELCRERGFAVSLGEWRREIFGVAAPLYRTPTGECLSVNCGMPSFRFSAEQIERECGPRILGLARSIRALV 259          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17431.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1H0PW31_9BRAD2.200e-15686.76Transcriptional regulator, IclR family n=5 Tax=Bra... [more]
A0A1H1U409_9BRAD1.780e-15387.69Transcriptional regulator, IclR family n=2 Tax=Bra... [more]
UPI001BAB18564.020e-15284.56IclR family transcriptional regulator n=3 Tax=uncl... [more]
A0A1M5LMW5_9BRAD7.390e-15186.59Transcriptional regulator, IclR family n=1 Tax=Bra... [more]
UPI001C01C6561.570e-14884.79IclR family transcriptional regulator n=3 Tax=uncl... [more]
UPI001BA6B0AD5.880e-14585.55IclR family transcriptional regulator n=1 Tax=Brad... [more]
A0A0R3MBE3_9BRAD1.440e-14380.15Uncharacterized protein n=12 Tax=Bradyrhizobium Ta... [more]
A0A0R3D5X1_9BRAD1.950e-14385.89Uncharacterized protein n=21 Tax=Bradyrhizobium Ta... [more]
A0A560MFR7_9BRAD5.590e-14380.51IclR family transcriptional regulator n=20 Tax=Bra... [more]
A0A109J763_9BRAD1.310e-14185.08Uncharacterized protein n=1 Tax=Bradyrhizobium mac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17431contigP-wetherbeei_contig17431:107..1061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1298867.AUES01000001_gene1856
PFAMsHTH_IclR,IclR
Model size955
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.13e-155
EggNOG OGsCOG1414@1|root,COG1414@2|Bacteria,1R4WS@1224|Proteobacteria,2TV0A@28211|Alphaproteobacteria,3JTY6@41294|Bradyrhizobiaceae
Descriptionhelix_turn_helix isocitrate lyase regulation
Cds size822
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.3887115-CDS-P-wetherbeei_contig17431:106..9281683186117.3887115-CDS-P-wetherbeei_contig17431:106..928Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17431 107..928 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186117.3988085-UTR-P-wetherbeei_contig17431:928..10611683186117.3988085-UTR-P-wetherbeei_contig17431:928..1061Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17431 929..1061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17431.1.1prot_P-wetherbeei_contig17431.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17431 107..928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17431.1.1

>prot_P-wetherbeei_contig17431.1.1 ID=prot_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
MAAISTIDPSPTSRTKAAVEAGDPAFATTLAHGLDVLAAFRSQSGSRSNA
DLALHTGLSRPTVSRLTYTLERLGYLKRDAKGRFELGLGALAAAYPVLSA
LKVRQLARPLMRDFAAYAGGTVSIAMPFGLDFIYVETLRTTDAVPHVPDV
GFTGTLATSAVGRALHSLSTPEELAAYVATVKAERPEEAEYVLTRTLPDI
ELCKERGFAVSLGEWRREIFGVAAPLYRTATGDRLSVNCGIPSFRFSAEQ
IERECGPRILGLARSIRSLVANS*
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mRNA from alignment at P-wetherbeei_contig17431:107..1061-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17431.1.1 ID=mRNA_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=955bp|location=Sequence derived from alignment at P-wetherbeei_contig17431:107..1061- (Phaeothamnion wetherbeei SAG_119_79)
CTTCCGACCGACTGGAAAGATCGAAATCCATGCCGCCTCCTGCTTTCCGA GGCAGATAATCGTATATCGATATGAATTGCAATTTCATTTTGATATATTG ACAGAATGTTAGATTGTGCCCACTATTATACGCATGGCAGCGATCTCGAC CATCGATCCCTCCCCAACTTCCCGGACCAAGGCCGCGGTGGAGGCAGGCG ATCCCGCCTTCGCAACGACGCTCGCGCATGGGCTCGACGTACTGGCCGCC TTCCGTAGCCAGAGCGGTTCGCGGTCGAACGCGGACCTCGCGCTCCATAC CGGCCTGTCGCGACCGACGGTATCGCGACTGACCTACACGCTGGAGCGGC TCGGCTATCTCAAGCGCGACGCCAAGGGACGTTTCGAACTCGGGCTCGGG GCACTCGCCGCCGCCTATCCGGTGTTGTCGGCGCTGAAAGTCCGGCAACT GGCGCGGCCGCTGATGCGCGACTTCGCCGCCTATGCCGGTGGCACGGTTT CGATCGCAATGCCGTTCGGGCTCGACTTCATCTATGTCGAGACGCTGCGC ACCACCGATGCGGTGCCGCATGTCCCCGATGTCGGATTTACCGGAACGCT GGCGACCTCGGCGGTTGGCCGCGCCTTGCACTCGCTCTCCACGCCGGAAG AACTCGCAGCTTACGTCGCAACCGTGAAGGCGGAGCGCCCCGAGGAAGCC GAATACGTGCTGACGCGGACGCTGCCTGACATCGAGCTGTGCAAGGAGCG CGGCTTTGCCGTTTCGCTCGGCGAATGGCGGCGTGAGATTTTTGGCGTCG CAGCGCCCTTGTACCGGACGGCGACCGGCGATCGCCTGTCCGTCAATTGC GGCATTCCTTCATTTCGTTTCAGCGCCGAGCAGATCGAGCGCGAATGCGG ACCCCGTATCCTGGGTCTTGCGCGCAGCATCCGGTCATTGGTCGCCAACA GCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17431:107..1061-

>mRNA_P-wetherbeei_contig17431.1.1 ID=mRNA_P-wetherbeei_contig17431.1.1|Name=mRNA_P-wetherbeei_contig17431.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig17431:107..1061- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGATCTCGACCATCGATCCCTCCCCAACTTCCCGGACCAAGGC
CGCGGTGGAGGCAGGCGATCCCGCCTTCGCAACGACGCTCGCGCATGGGC
TCGACGTACTGGCCGCCTTCCGTAGCCAGAGCGGTTCGCGGTCGAACGCG
GACCTCGCGCTCCATACCGGCCTGTCGCGACCGACGGTATCGCGACTGAC
CTACACGCTGGAGCGGCTCGGCTATCTCAAGCGCGACGCCAAGGGACGTT
TCGAACTCGGGCTCGGGGCACTCGCCGCCGCCTATCCGGTGTTGTCGGCG
CTGAAAGTCCGGCAACTGGCGCGGCCGCTGATGCGCGACTTCGCCGCCTA
TGCCGGTGGCACGGTTTCGATCGCAATGCCGTTCGGGCTCGACTTCATCT
ATGTCGAGACGCTGCGCACCACCGATGCGGTGCCGCATGTCCCCGATGTC
GGATTTACCGGAACGCTGGCGACCTCGGCGGTTGGCCGCGCCTTGCACTC
GCTCTCCACGCCGGAAGAACTCGCAGCTTACGTCGCAACCGTGAAGGCGG
AGCGCCCCGAGGAAGCCGAATACGTGCTGACGCGGACGCTGCCTGACATC
GAGCTGTGCAAGGAGCGCGGCTTTGCCGTTTCGCTCGGCGAATGGCGGCG
TGAGATTTTTGGCGTCGCAGCGCCCTTGTACCGGACGGCGACCGGCGATC
GCCTGTCCGTCAATTGCGGCATTCCTTCATTTCGTTTCAGCGCCGAGCAG
ATCGAGCGCGAATGCGGACCCCGTATCCTGGGTCTTGCGCGCAGCATCCG
GTCATTGGTCGCCAACAGCTAA
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