mRNA_P-wetherbeei_contig17422.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17422.1.1
Unique NamemRNA_P-wetherbeei_contig17422.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17422.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17422contigP-wetherbeei_contig17422:2..1433 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1432
Hectar predicted targeting categoryother localisation
Exons1
Cds size951
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.976736-UTR-P-wetherbeei_contig17422:1..3301683186116.976736-UTR-P-wetherbeei_contig17422:1..330Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17422 2..330 +
1683186117.002436-UTR-P-wetherbeei_contig17422:1281..14331683186117.002436-UTR-P-wetherbeei_contig17422:1281..1433Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17422 1282..1433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.9891152-CDS-P-wetherbeei_contig17422:330..12811683186116.9891152-CDS-P-wetherbeei_contig17422:330..1281Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17422 331..1281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17422.1.1prot_P-wetherbeei_contig17422.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17422 331..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17422.1.1

>prot_P-wetherbeei_contig17422.1.1 ID=prot_P-wetherbeei_contig17422.1.1|Name=mRNA_P-wetherbeei_contig17422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=317bp
MQQQPGQPMQPMQQQQQQQQQGYGADPSVMQLGMQFQGMGIQYSNGGSGG
GGNSFAPYDPSQQPPPPPQQQQMQQMQQMQMLQQQQQAGGYWTGHQQQPQ
PQQPGYGQFDPSQWGPGGGGAGDPNAPNGAGVFGGGGDGGEEPRVKSLDK
DLWQLGQDKKLVALDDLTDVRRVTAKIQPGAQDRRSLAELATNRGQAGAA
APTAATPVMLPPRPAPPQPQQYALVPVSALAAYATAAGGYGQQMQMQQPQ
QMQAPMQMVAPQQQMQYATSYGAGGGNMPMPQQQMPQQYQTAAGYSVAGG
GGVNVYYTNQQQQYGR*
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mRNA from alignment at P-wetherbeei_contig17422:2..1433+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17422.1.1 ID=mRNA_P-wetherbeei_contig17422.1.1|Name=mRNA_P-wetherbeei_contig17422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1432bp|location=Sequence derived from alignment at P-wetherbeei_contig17422:2..1433+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGCAAGAAGGAGAAGAAGGGGCGGCACAAAGACGGCGGCGCCGCCGTC
GCCGTCCTCGCCGCCGGTAAGCTTGCCCGCAAGGCCAGCGCCCGCCGGGC
GTCGACCAGCAGCGAGGGAACCGGCGGCGGCGGCGGTGGAGCTGGCGGAG
CTCCGGCGGACATTCTGTCGGTGGACCCGCGGACTCTCCAGCCGGACCCG
TTCGCGGCCCGTGGAGGCGGCAATGCGGCTGGCGGCGGCGGGGGGGGCGG
TGGTTTCGACCCGCTGGCGCCGGGGTACGACCACTACGGGGTGCAGCAGG
GATACAACGCATATGGCGGGCAGCCGCCGATGCAGCAGCAGCCGGGACAG
CCGATGCAGCCGATGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGATATGG
CGCGGATCCTTCGGTTATGCAGCTGGGCATGCAGTTCCAGGGCATGGGCA
TCCAGTACAGCAACGGTGGCAGCGGCGGCGGCGGGAACAGCTTTGCGCCG
TACGACCCTTCGCAGCAGCCACCACCGCCACCGCAGCAGCAGCAAATGCA
GCAGATGCAGCAGATGCAAATGCTGCAGCAGCAACAGCAGGCGGGCGGTT
ACTGGACAGGCCACCAGCAGCAACCGCAGCCGCAGCAGCCGGGATACGGC
CAGTTTGACCCTTCGCAGTGGGGACCCGGTGGCGGCGGCGCCGGCGATCC
GAACGCGCCCAACGGGGCCGGCGTTTTTGGCGGCGGTGGTGACGGCGGGG
AGGAGCCGCGCGTGAAGAGTCTGGACAAGGATCTGTGGCAGCTGGGGCAG
GACAAGAAGCTGGTGGCGCTGGACGACCTGACGGACGTCCGTCGCGTGAC
CGCAAAGATCCAGCCCGGCGCGCAGGACCGGCGGTCCCTCGCGGAGCTGG
CGACCAACCGAGGCCAGGCCGGAGCGGCGGCGCCCACCGCAGCGACGCCG
GTCATGTTGCCGCCGCGGCCGGCGCCGCCGCAGCCGCAGCAGTATGCGCT
CGTGCCGGTCTCTGCGCTGGCGGCGTACGCGACGGCTGCGGGCGGGTACG
GCCAGCAGATGCAAATGCAGCAGCCGCAGCAGATGCAGGCGCCAATGCAG
ATGGTGGCGCCGCAGCAGCAGATGCAGTACGCGACTTCTTACGGCGCCGG
CGGCGGCAACATGCCAATGCCGCAGCAACAAATGCCGCAGCAGTACCAGA
CGGCAGCCGGCTACAGCGTGGCGGGCGGCGGCGGCGTCAACGTTTATTAC
ACCAACCAGCAGCAGCAGTACGGCCGGTGACGCCGCCGCTTACTGCGGGT
CGGCGGCGATGGCGTCGGCAGTGGTTGGCGATCTGCGCAGCGGATTTCGG
AAGCGATGGAGGCGTCCAGGCGGTTCCGCGTGCGTGCCACCGTGGCATGA
ACGTGATGACGGTGGGGAGCATCGGTGGGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17422:2..1433+

>mRNA_P-wetherbeei_contig17422.1.1 ID=mRNA_P-wetherbeei_contig17422.1.1|Name=mRNA_P-wetherbeei_contig17422.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=951bp|location=Sequence derived from alignment at P-wetherbeei_contig17422:2..1433+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCAGCAGCCGGGACAGCCGATGCAGCCGATGCAGCAGCAGCAGCA
GCAGCAGCAGCAGGGATATGGCGCGGATCCTTCGGTTATGCAGCTGGGCA
TGCAGTTCCAGGGCATGGGCATCCAGTACAGCAACGGTGGCAGCGGCGGC
GGCGGGAACAGCTTTGCGCCGTACGACCCTTCGCAGCAGCCACCACCGCC
ACCGCAGCAGCAGCAAATGCAGCAGATGCAGCAGATGCAAATGCTGCAGC
AGCAACAGCAGGCGGGCGGTTACTGGACAGGCCACCAGCAGCAACCGCAG
CCGCAGCAGCCGGGATACGGCCAGTTTGACCCTTCGCAGTGGGGACCCGG
TGGCGGCGGCGCCGGCGATCCGAACGCGCCCAACGGGGCCGGCGTTTTTG
GCGGCGGTGGTGACGGCGGGGAGGAGCCGCGCGTGAAGAGTCTGGACAAG
GATCTGTGGCAGCTGGGGCAGGACAAGAAGCTGGTGGCGCTGGACGACCT
GACGGACGTCCGTCGCGTGACCGCAAAGATCCAGCCCGGCGCGCAGGACC
GGCGGTCCCTCGCGGAGCTGGCGACCAACCGAGGCCAGGCCGGAGCGGCG
GCGCCCACCGCAGCGACGCCGGTCATGTTGCCGCCGCGGCCGGCGCCGCC
GCAGCCGCAGCAGTATGCGCTCGTGCCGGTCTCTGCGCTGGCGGCGTACG
CGACGGCTGCGGGCGGGTACGGCCAGCAGATGCAAATGCAGCAGCCGCAG
CAGATGCAGGCGCCAATGCAGATGGTGGCGCCGCAGCAGCAGATGCAGTA
CGCGACTTCTTACGGCGCCGGCGGCGGCAACATGCCAATGCCGCAGCAAC
AAATGCCGCAGCAGTACCAGACGGCAGCCGGCTACAGCGTGGCGGGCGGC
GGCGGCGTCAACGTTTATTACACCAACCAGCAGCAGCAGTACGGCCGGTG
A
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