mRNA_P-wetherbeei_contig17408.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17408.1.1
Unique NamemRNA_P-wetherbeei_contig17408.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A835ZCM5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCM5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 4.100e-28
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK 252
            VFVRNLP  FLEPDIE LFGE GPIKR+DLIK+M D G K S+GFGFVRFAL+ DA  AAAAL+G+ V G+ +  EIA+KKGAK
Sbjct:   31 VFVRNLPETFLEPDIETLFGEHGPIKRIDLIKSMHD-GAKLSKGFGFVRFALQADAAAAAAALNGRQVQGKAISVEIAMKKGAK 113
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: D7G584_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G584_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 2.340e-21
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:   31 LEPDIENLFGEFGPIKRVDLIKTMDDE-GIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK 252
            LEPDIE +  + GPIKR+DLIKT D E G K SRGFGFV FALE DA KA + +H K V GR++ CEIALKKGAK
Sbjct:    2 LEPDIETMLADCGPIKRIDLIKTTDAETGAKRSRGFGFVTFALESDATKAVSIIHRKRVMGREVSCEIALKKGAK 76
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A4D9CR96_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CR96_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.500e-15
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK 252
            +FVRNLP      D+E L G  GP+KR  +I++ D      SRGFGFV+FA+ EDA +A A L G  +NGR L  E+ALK+G K
Sbjct:    9 IFVRNLPFSASTTDLEVLCGSIGPVKRASIIQSGDG----VSRGFGFVKFAMPEDAMRAVAILSGAELNGRTLSIELALKRGQK 88
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: W7T7L7_9STRA (Rna-binding protein 28 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T7L7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.840e-15
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK 252
            +FVRNLP      D+E L G+ GP+KR  +I++ D      SRGFGFV++A+ EDA +A A L G  +NGR L  E+ALK+G K
Sbjct:    9 IFVRNLPFSASTTDLEVLCGKIGPVKRASIIQSGDG----VSRGFGFVKYAMPEDAMRAVAILSGAELNGRTLSIELALKRGQK 88
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A7S1U6V6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6V6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.250e-15
Identity = 40/81 (49.38%), Postives = 52/81 (64.20%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKK 243
            VFVR LP ++ E  +  LF + GP+KRVDLI+   D   + S+GFGFVRFA+  DA +AA  L G+   GR +  EIA KK
Sbjct:   10 VFVRQLPFDWTEEQVMQLFSDSGPVKRVDLIR---DAKTRQSKGFGFVRFAMAPDARRAAQDLDGQRKGGRTIRVEIASKK 87
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A8K1CP94_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CP94_PYTOL)

HSP 1 Score: 75.5 bits (184), Expect = 4.700e-14
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIK----TSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKK 243
            VFVRNLP +  +  +E +FGE GP+K+VD+IK   D+G K    T+RGF FVRFA+  DA  A   LH     GRK+  EIA +K
Sbjct:    5 VFVRNLPFDVTQDALEQVFGEIGPVKKVDVIK---DKGKKKSETTTRGFAFVRFAMAADAQYAIEKLHQSDFRGRKMILEIAKEK 86
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A7S4F0N5_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F0N5_CHRCT)

HSP 1 Score: 73.9 bits (180), Expect = 1.160e-13
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEI 231
            VFVRNLP +  +P++E+ F   GP+ R  +++   D+  +  RGFGFV F L +DA +AAA LHGK + GRK+  ++
Sbjct:   28 VFVRNLPYDLSDPELEDHFAAIGPVTRAFVVR---DKRTREGRGFGFVSFVLPDDACRAAAELHGKLLKGRKITVDL 101
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: K3WMW4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMW4_GLOUD)

HSP 1 Score: 73.9 bits (180), Expect = 1.630e-13
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTS----RGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKG 246
            VFVRNLP    + ++E +F + GP+K+VD+IK   D+G K S    RGF FV+FA+E DA  A   L+G  + GR++  EIA +KG
Sbjct:    5 VFVRNLPYGITQEELEQVFSDIGPVKKVDVIK---DKGKKKSDMLTRGFAFVKFAIENDAVYAVEKLNGHELQGRRMRLEIAREKG 87
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BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A1V9ZKF3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKF3_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.640e-13
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTS----RGFGFVRFALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK 252
            +FVRNL     + ++ENLFG+ GP+K+V +IK   D+G + +    RGF FV+FA+E DA  A  AL+     GRKLC +IA  K  K
Sbjct:    5 IFVRNLAYGVSQQELENLFGDIGPVKKVSVIK---DKGKRKTDMLTRGFAFVKFAMESDAKAAMEALNNTDYQGRKLCIDIAKDKAGK 89
[Close]
BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Match: A0A2D4BNT5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BNT5_PYTIN)

HSP 1 Score: 73.9 bits (180), Expect = 1.650e-13
Identity = 41/84 (48.81%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTS-RGFGFVRFALEEDAGKAAAALHGKFVNGRK-LCCEIALKKG 246
            VFVRNLP +  +  +E +FGE GP+K+VD+IK    +  +T+ RGF FVRFA+  DA  A   LH     GRK L  EIA +KG
Sbjct:  247 VFVRNLPFDVTQDALEQVFGEIGPVKKVDVIKDKGKQKSETTTRGFAFVRFAMSADAEAAIQQLHQSDFRGRKMLVAEIAKEKG 330
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17408.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCM5_9STRA4.100e-2870.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G584_ECTSI2.340e-2166.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9CR96_9STRA1.500e-1550.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7T7L7_9STRA2.840e-1548.81Rna-binding protein 28 n=1 Tax=Nannochloropsis gad... [more]
A0A7S1U6V6_9STRA7.250e-1549.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8K1CP94_PYTOL4.700e-1449.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S4F0N5_CHRCT1.160e-1344.16Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
K3WMW4_GLOUD1.630e-1346.51Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9ZKF3_9STRA1.640e-1345.45Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A2D4BNT5_PYTIN1.650e-1348.81Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17408contigP-wetherbeei_contig17408:19..270 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G584
PFAMsRRM_1
Model size252
Max annot lvl2759|Eukaryota
KEGG koko:K14573
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006366,GO:0006396,GO:0006397,GO:0006401,GO:0006417,GO:0006725,GO:0006807,GO:0007623,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009299,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0016070,GO:0016071,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032204,GO:0032206,GO:0032268,GO:0032270,GO:0032501,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034250,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042162,GO:0042752,GO:0042789,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043487,GO:0043488,GO:0043565,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0045893,GO:0045935,GO:0046483,GO:0046700,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051972,GO:0051973,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097167,GO:0097659,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1904353,GO:1904355,GO:1905661,GO:1905663,GO:1990904,GO:2000112,GO:2000278,GO:2000573,GO:2001141,GO:2001252
Exons1
Evalue3.83e-22
EggNOG OGsKOG0127@1|root,KOG0127@2759|Eukaryota
DescriptionRNA processing
Cds size252
COG categoryK
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.7029958-CDS-P-wetherbeei_contig17408:18..2701683186116.7029958-CDS-P-wetherbeei_contig17408:18..270Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17408 19..270 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17408.1.1prot_P-wetherbeei_contig17408.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17408 19..270 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17408.1.1

>prot_P-wetherbeei_contig17408.1.1 ID=prot_P-wetherbeei_contig17408.1.1|Name=mRNA_P-wetherbeei_contig17408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=84bp
VFVRNLPVEFLEPDIENLFGEFGPIKRVDLIKTMDDEGIKTSRGFGFVRF
ALEEDAGKAAAALHGKFVNGRKLCCEIALKKGAK
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mRNA from alignment at P-wetherbeei_contig17408:19..270-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17408.1.1 ID=mRNA_P-wetherbeei_contig17408.1.1|Name=mRNA_P-wetherbeei_contig17408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig17408:19..270- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGTGCGCAACCTTCCCGTAGAGTTTCTGGAGCCTGACATCGAGAA
TCTCTTTGGCGAATTTGGACCCATCAAGCGTGTGGACTTGATTAAGACGA
TGGACGACGAGGGAATCAAGACAAGCCGCGGCTTTGGCTTTGTACGGTTC
GCGCTCGAGGAGGACGCGGGCAAAGCTGCAGCGGCCCTGCATGGCAAGTT
TGTCAATGGCCGGAAGCTCTGCTGCGAGATCGCGCTGAAGAAGGGCGCCA
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17408:19..270-

>mRNA_P-wetherbeei_contig17408.1.1 ID=mRNA_P-wetherbeei_contig17408.1.1|Name=mRNA_P-wetherbeei_contig17408.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=252bp|location=Sequence derived from alignment at P-wetherbeei_contig17408:19..270- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTCGTGCGCAACCTTCCCGTAGAGTTTCTGGAGCCTGACATCGAGAA
TCTCTTTGGCGAATTTGGACCCATCAAGCGTGTGGACTTGATTAAGACGA
TGGACGACGAGGGAATCAAGACAAGCCGCGGCTTTGGCTTTGTACGGTTC
GCGCTCGAGGAGGACGCGGGCAAAGCTGCAGCGGCCCTGCATGGCAAGTT
TGTCAATGGCCGGAAGCTCTGCTGCGAGATCGCGCTGAAGAAGGGCGCCA
AG
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