mRNA_P-wetherbeei_contig174.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig174.3.1
Unique NamemRNA_P-wetherbeei_contig174.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig174.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig174contigP-wetherbeei_contig174:2794..4149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size929
Hectar predicted targeting categoryother localisation
Exons2
Cds size801
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.4471169-UTR-P-wetherbeei_contig174:2793..29171683186116.4471169-UTR-P-wetherbeei_contig174:2793..2917Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig174 2794..2917 +
1683186116.457673-UTR-P-wetherbeei_contig174:3344..33481683186116.457673-UTR-P-wetherbeei_contig174:3344..3348Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig174 3345..3348 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.4673798-CDS-P-wetherbeei_contig174:3348..41491683186116.4673798-CDS-P-wetherbeei_contig174:3348..4149Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig174 3349..4149 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig174.3.1prot_P-wetherbeei_contig174.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig174 3349..4149 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig174.3.1

>prot_P-wetherbeei_contig174.3.1 ID=prot_P-wetherbeei_contig174.3.1|Name=mRNA_P-wetherbeei_contig174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
MWAQPAVLICCPPEEERFPGSEGSTSSGGVNDSPPSANSTTLAATDFGGG
GGWRWKSKPYTRASCDRCVHLKRHCNGGRPVCNRCKAAVLTNCHYSCTRR
RPNRFLTHKSAPAPIASVALVERVTLSQSPAVGLTGAENSYLRSFLACFG
NAIPFGCTPSAIVATLLGTSTIPRTTAAAAAAAAAAAKAGVRAGATTAAA
APLAGGSAREILREGLAIAVLGLGAVMSGNCVNPSDHAMLMLRANLCIQR
ALEVWVPDGDDGAGGRS
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mRNA from alignment at P-wetherbeei_contig174:2794..4149+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig174.3.1 ID=mRNA_P-wetherbeei_contig174.3.1|Name=mRNA_P-wetherbeei_contig174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1356bp|location=Sequence derived from alignment at P-wetherbeei_contig174:2794..4149+ (Phaeothamnion wetherbeei SAG_119_79)
GTTCGTAGGACCTTTCGGCAAAAAGTGAAGGTACACTCGTGTGCCCCCAG
ACAGGACGGACGAGGGAAATTTGAAAGCAGTCAGATCTCCGGCCCCATCA
CTTGCGAAAAGAAGTGTCAAAAAGGTAAATGAAAAGGGTCGTGTCTCCCT
GATTCCCTTCTCTTTCTGCGCTAAAGCGAAAGGCATAGCGTAATCGCATC
TCATGCATGAAAGCCCCGTTCCTCGTCCTGGAGTTCTGCGGCTTCAAACA
TGCATTTTATTAATTGTTGGTTGGTTCCTAGACGATGGGTTATCATTACA
AAACAATTGAAGTCTCCGCGTGGACAGGGTGGCCATTGGCCGCCGGCCTG
CTTTTTCACGAGCACGTGGCCTTGAAACTCATGGCGGTACCTACAACACA
GAAACTATGGGTTATCATTTGACAAAGTAAAAGTCCACCTGGAAAGGTGG
CGTTAGCCGCGTGCGTGCTTTTCCGCGAGTTCGTGGGTCTTGAAACTCAT
TACGGTCACCGTTTCCGTCCGTCCCTCGATCCCTGTATTCTGTCATTGCA
GCGATATGTGGGCTCAGCCTGCCGTCCTGATATGCTGCCCGCCGGAAGAA
GAAAGATTTCCAGGGTCCGAGGGCAGCACATCCTCCGGCGGCGTCAACGA
CAGCCCGCCATCAGCTAACTCGACGACGTTAGCGGCGACGGATTTTGGAG
GCGGCGGCGGCTGGCGATGGAAGAGCAAACCGTACACCCGAGCATCTTGC
GATCGCTGTGTGCACCTGAAACGGCATTGCAACGGAGGCCGCCCCGTCTG
CAACCGCTGCAAAGCCGCCGTCCTCACCAACTGCCACTACTCGTGCACGC
GACGCCGCCCGAACCGCTTCCTGACCCACAAGTCCGCCCCGGCGCCCATC
GCCTCCGTAGCTCTGGTCGAGCGCGTCACACTGTCGCAGTCCCCAGCGGT
CGGCCTGACCGGCGCAGAGAACTCATACCTGCGCTCCTTCCTGGCGTGCT
TCGGCAACGCCATTCCCTTCGGGTGCACACCAAGCGCCATCGTCGCGACG
CTCCTCGGCACAAGCACCATTCCACGAACCACTGCGGCGGCGGCGGCGGC
GGCGGCCGCGGCGGCAAAAGCGGGTGTGAGAGCAGGTGCAACGACTGCCG
CCGCCGCGCCCCTAGCTGGCGGCAGTGCTCGCGAGATTTTGCGGGAGGGC
CTCGCCATTGCCGTCTTGGGACTCGGCGCCGTGATGTCTGGCAATTGCGT
CAATCCGTCCGACCACGCGATGCTAATGTTGCGCGCCAACCTGTGCATAC
AGCGCGCTCTCGAAGTGTGGGTCCCGGATGGTGACGACGGCGCCGGCGGC
CGCAGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig174:2794..4149+

>mRNA_P-wetherbeei_contig174.3.1 ID=mRNA_P-wetherbeei_contig174.3.1|Name=mRNA_P-wetherbeei_contig174.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig174:2794..4149+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTGGGCTCAGCCTGCCGTCCTGATATGCTGCCCGCCGGAAGAAGAAAG
ATTTCCAGGGTCCGAGGGCAGCACATCCTCCGGCGGCGTCAACGACAGCC
CGCCATCAGCTAACTCGACGACGTTAGCGGCGACGGATTTTGGAGGCGGC
GGCGGCTGGCGATGGAAGAGCAAACCGTACACCCGAGCATCTTGCGATCG
CTGTGTGCACCTGAAACGGCATTGCAACGGAGGCCGCCCCGTCTGCAACC
GCTGCAAAGCCGCCGTCCTCACCAACTGCCACTACTCGTGCACGCGACGC
CGCCCGAACCGCTTCCTGACCCACAAGTCCGCCCCGGCGCCCATCGCCTC
CGTAGCTCTGGTCGAGCGCGTCACACTGTCGCAGTCCCCAGCGGTCGGCC
TGACCGGCGCAGAGAACTCATACCTGCGCTCCTTCCTGGCGTGCTTCGGC
AACGCCATTCCCTTCGGGTGCACACCAAGCGCCATCGTCGCGACGCTCCT
CGGCACAAGCACCATTCCACGAACCACTGCGGCGGCGGCGGCGGCGGCGG
CCGCGGCGGCAAAAGCGGGTGTGAGAGCAGGTGCAACGACTGCCGCCGCC
GCGCCCCTAGCTGGCGGCAGTGCTCGCGAGATTTTGCGGGAGGGCCTCGC
CATTGCCGTCTTGGGACTCGGCGCCGTGATGTCTGGCAATTGCGTCAATC
CGTCCGACCACGCGATGCTAATGTTGCGCGCCAACCTGTGCATACAGCGC
GCTCTCGAAGTGTGGGTCCCGGATGGTGACGACGGCGCCGGCGGCCGCAG
T
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