mRNA_P-wetherbeei_contig174.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig174.4.1
Unique NamemRNA_P-wetherbeei_contig174.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig174.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig174contigP-wetherbeei_contig174:4205..7417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2335
Hectar predicted targeting categoryother localisation
Exons4
Cds size1791
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig174.4.1prot_P-wetherbeei_contig174.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig174 4300..6968 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.3668609-UTR-P-wetherbeei_contig174:4204..42991683186116.3668609-UTR-P-wetherbeei_contig174:4204..4299Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig174 4205..4299 +
1683186116.4140196-UTR-P-wetherbeei_contig174:6968..74171683186116.4140196-UTR-P-wetherbeei_contig174:6968..7417Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig174 6969..7417 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186116.3755522-CDS-P-wetherbeei_contig174:4299..43831683186116.3755522-CDS-P-wetherbeei_contig174:4299..4383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig174 4300..4383 +
1683186116.386319-CDS-P-wetherbeei_contig174:4530..54091683186116.386319-CDS-P-wetherbeei_contig174:4530..5409Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig174 4531..5409 +
1683186116.3957398-CDS-P-wetherbeei_contig174:5716..59411683186116.3957398-CDS-P-wetherbeei_contig174:5716..5941Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig174 5717..5941 +
1683186116.4062595-CDS-P-wetherbeei_contig174:6365..69681683186116.4062595-CDS-P-wetherbeei_contig174:6365..6968Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig174 6366..6968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig174.4.1

>prot_P-wetherbeei_contig174.4.1 ID=prot_P-wetherbeei_contig174.4.1|Name=mRNA_P-wetherbeei_contig174.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=597bp
MPPGALLCVIQMLEAMYHLAIGRDFLYDECVQDAVASFEIAWSPGCDEAG
SAAASSPLRTRLGAILLLFQRLSAMNHQLPMVPSPVTALPKAHDGEAATA
VPDHAAAAAAAAAAAGPADTGAVAGGGAAGAAEATGQNPFAAGPGGAGLP
FPFNLAEVLTTGGPALAATVAAMAVALGGLPALPPTPSLDKQGDAAAVAA
LGTPVQLLNCLQFLLDFYSPIIIARELAKQLGLSEEAFGCGGGDTGAGDR
DAGNGGDGSDGGNGGDGTSSVVADFLVRNSANPSAMVGTGKVRPPWELAS
RTEMEQAALLSEWCFRRTFEELADTGLFLLVPIMWMRHTAVAASMEYNEE
RGEMAAKTWSATMALAPNCPGLLAFHPVEPLRACALATTCGKNAAAMDSA
YETFKECWGVCQRNAGGCFDPAARIDSRALIREKLWSGKYKPIFVKGAEV
VLDWSPAEPADAADAAAAGGAAAAVHDAEAAAAATASDAAVAVPAVGVGN
AVPARTAAASAPPATAAPTASASAAVAGAAAAAAAAATSVDWAYGANTAT
WHDVIVSTAAEPAFADVAPALAAPLAAPHPSPFAGAGAGASGPAHG*
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mRNA from alignment at P-wetherbeei_contig174:4205..7417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig174.4.1 ID=mRNA_P-wetherbeei_contig174.4.1|Name=mRNA_P-wetherbeei_contig174.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3213bp|location=Sequence derived from alignment at P-wetherbeei_contig174:4205..7417+ (Phaeothamnion wetherbeei SAG_119_79)
GCACCGGCGACAGCGGCGGCGGCGGCAGCCTGCGGCACCGGGCGTCGCGG
ACGCCGCCGCGGGTGCTGTTAGGACGCGAGGAGGACGTGCTGGAGATGCC
GCCCGGCGCGCTCTTGTGCGTCATTCAGATGCTCGAGGCCATGTACCACC
TCGCGATCGGCAGAGACTTTCTGTATGACGTAAGTCTAAATCGCGATATT
CGCAGAAGAAATTGGTAAACCAAAGTTCGCCTCAGCAACCGTCAAAACGC
AATTCTAACCGGTGTGCACACATCGGCATTTCCTTTTGTTTTTGCCGGCG
GCTGCCACCCAATAAAATATTTGCAGGAGTGCGTGCAAGACGCTGTGGCG
TCATTTGAGATCGCGTGGTCGCCTGGCTGCGACGAAGCTGGCTCGGCAGC
AGCGTCGTCGCCGCTTCGCACCCGGCTGGGTGCCATTCTGCTGCTGTTTC
AGCGGCTGTCGGCGATGAACCACCAGCTTCCGATGGTGCCTTCGCCCGTC
ACGGCCCTTCCCAAGGCCCATGACGGGGAAGCGGCGACTGCGGTTCCCGA
CCATGCCGCTGCCGCTGCAGCAGCTGCCGCTGCCGCTGGCCCCGCCGACA
CTGGCGCCGTCGCCGGCGGTGGCGCCGCCGGTGCCGCCGAAGCGACGGGT
CAGAACCCTTTCGCGGCCGGCCCGGGCGGTGCGGGGCTGCCGTTTCCCTT
CAACCTCGCGGAGGTTCTAACAACGGGCGGCCCGGCGCTTGCGGCGACTG
TGGCGGCCATGGCTGTGGCTTTGGGGGGGCTCCCGGCGCTCCCGCCCACC
CCTTCTCTCGACAAGCAGGGGGACGCCGCCGCTGTCGCCGCCCTCGGTAC
CCCGGTGCAGCTGCTCAACTGCCTGCAGTTTCTTCTCGACTTCTACTCGC
CGATCATCATCGCCAGGGAGCTCGCAAAGCAATTGGGCCTCTCGGAAGAG
GCATTTGGCTGCGGCGGCGGTGACACCGGCGCCGGCGACCGTGACGCCGG
CAACGGCGGCGATGGCAGTGACGGCGGCAATGGTGGTGACGGCACAAGCA
GCGTCGTTGCCGATTTTCTCGTCAGGAACAGCGCTAACCCGTCCGCCATG
GTCGGCACAGGAAAAGTCCGGCCGCCGTGGGAACTGGCGTCGCGGACGGA
GATGGAACAGGCAGCGCTCCTCTCGGAATGGTGCTTCCGCCGCACTTTTG
AAGAGGTGAGAGGTTTGCCAGTCCCCGTTGCCGTCCGTCCGGTGGCATGG
AAAACGTCGCGCATGCTTCAAGCTTTCGTGGCTTCTTTCATGACGGTCAG
CGTCACCAGCAGAGTGCTGAAAACCGCCTGCCGCATCGGCCGTCCCTGTG
TTGTTGCAACGTTTTGGGAAAGAGAACTCAGCCGCAGTACTTTTTTCTGT
GTGTCTACGCTCTCGCCGCAACGCTACTCAACACAATGCCTTTCCTCCAA
ATATCTGTCCGTCTCCATCCTGGCTGCCGATTGACGGCTGGCGGTGGCGG
CGGCGGCTGCAGCTCGCCGACACCGGCCTCTTCCTGCTAGTGCCCATCAT
GTGGATGCGACACACTGCCGTGGCGGCCAGCATGGAGTACAACGAGGAGC
GGGGCGAGATGGCGGCCAAGACGTGGAGCGCCACCATGGCGCTGGCACCC
AACTGCCCGGGCCTGCTGGCATTCCACCCGGTGGAGCCACTGCGGGCATG
CGCGCTGGCGACAACATGCGGGAAGAATGCCGCGGCGGTGCGTCGTATTT
GCTTTGTATATTTCTTTCTGCCTGGCTGATTGCCAGCCGGGAGGGGCATT
GAGAGTGTTTGCTGCTGCTGATCGTTCTTCTCTTCTCTCTTTCTGTGCCT
GACCGGTCGTTGTCGGTTTGCATCGTTTGCAGCGGATACGCTGCCGCTCC
TTCTTTAGGGAGCAACGTTGGCCGTTCGCACCCGTTGATGCCGTTGTGGT
CGACAGGCCCCTCCAGACTCGTTCCTTGTTCTGAGATCCATTTGGAGACA
GATGTACCGTTTCTTACTTGTCTGAGGTGCCGCCGCTGCCGCCACCATTG
CTGCTGCTTTCGCCGCTGCTGTCGCCGCTATCGCCATTGCCGCTCGCTGA
CCGCTACAACCCCGTCATCTTCGCGGTGTCATTTTTTACCTGCTACCTCC
TTTATCCGCAGATGGACAGCGCCTATGAGACCTTCAAGGAGTGCTGGGGC
GTCTGCCAGCGCAACGCGGGCGGGTGCTTCGATCCTGCGGCGCGCATCGA
CTCGCGAGCGCTGATTCGCGAGAAGCTCTGGAGCGGGAAATACAAACCCA
TCTTCGTGAAGGGCGCCGAAGTCGTCTTGGACTGGAGCCCGGCGGAACCG
GCGGACGCGGCGGACGCGGCGGCAGCGGGCGGCGCGGCGGCGGCGGTGCA
CGACGCGGAAGCGGCGGCAGCGGCAACGGCTAGTGACGCGGCAGTGGCGG
TGCCAGCGGTGGGGGTCGGTAACGCAGTGCCGGCGCGGACAGCGGCGGCA
TCTGCGCCGCCGGCGACGGCAGCCCCGACTGCATCAGCGTCGGCGGCGGT
GGCAGGAGCGGCAGCTGCAGCGGCGGCGGCGGCGACGTCAGTCGACTGGG
CATACGGCGCGAACACGGCGACGTGGCACGATGTGATCGTGTCGACCGCG
GCGGAGCCGGCGTTCGCTGATGTTGCACCGGCGTTGGCGGCCCCGCTTGC
GGCGCCGCACCCAAGCCCGTTTGCAGGTGCCGGCGCCGGCGCCAGTGGCC
CGGCGCATGGTTGAGAAGTCGGCCGCAGGGCTCTGAGACTCGACCACTGC
AGCGCCGGCAGACGTGCTGCTGCCGCAATCGCTGCAGTGCTGATCCTGAC
TTTTCGGTTGGACAAGTCTGCGGCAGTTAAGGAGGCACTACGGGCGCTTC
AGTGCGTTCGTCGGCGGCCTCTGCTTTCCTGCCTCGCCATGCTGCCGGCG
CCGCGCCAATTGCCGGTGGATGAGAGGAGGCGGGCAGGCGGGCGGGCGGG
CCCTTACCAGCCCTGAGGGGAAGCCTCCATCTGACTGCTGCCGGGCACCT
GCCAGGAACGCCCGCGGACGTATTTACCGGGGGCATGCGGCGCCCCCTAT
TTTGCGCTCGCTGCAAGTGAGTACGCGCCTTTCTTCGCGGTCGGTGTGGG
CGAGCCGATCTTGGGATATTGATCGCGTTGAGGCGACGATTATACTCCTT
GGCGTTCGAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig174:4205..7417+

>mRNA_P-wetherbeei_contig174.4.1 ID=mRNA_P-wetherbeei_contig174.4.1|Name=mRNA_P-wetherbeei_contig174.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1791bp|location=Sequence derived from alignment at P-wetherbeei_contig174:4205..7417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCCGGCGCGCTCTTGTGCGTCATTCAGATGCTCGAGGCCATGTA
CCACCTCGCGATCGGCAGAGACTTTCTGTATGACGAGTGCGTGCAAGACG
CTGTGGCGTCATTTGAGATCGCGTGGTCGCCTGGCTGCGACGAAGCTGGC
TCGGCAGCAGCGTCGTCGCCGCTTCGCACCCGGCTGGGTGCCATTCTGCT
GCTGTTTCAGCGGCTGTCGGCGATGAACCACCAGCTTCCGATGGTGCCTT
CGCCCGTCACGGCCCTTCCCAAGGCCCATGACGGGGAAGCGGCGACTGCG
GTTCCCGACCATGCCGCTGCCGCTGCAGCAGCTGCCGCTGCCGCTGGCCC
CGCCGACACTGGCGCCGTCGCCGGCGGTGGCGCCGCCGGTGCCGCCGAAG
CGACGGGTCAGAACCCTTTCGCGGCCGGCCCGGGCGGTGCGGGGCTGCCG
TTTCCCTTCAACCTCGCGGAGGTTCTAACAACGGGCGGCCCGGCGCTTGC
GGCGACTGTGGCGGCCATGGCTGTGGCTTTGGGGGGGCTCCCGGCGCTCC
CGCCCACCCCTTCTCTCGACAAGCAGGGGGACGCCGCCGCTGTCGCCGCC
CTCGGTACCCCGGTGCAGCTGCTCAACTGCCTGCAGTTTCTTCTCGACTT
CTACTCGCCGATCATCATCGCCAGGGAGCTCGCAAAGCAATTGGGCCTCT
CGGAAGAGGCATTTGGCTGCGGCGGCGGTGACACCGGCGCCGGCGACCGT
GACGCCGGCAACGGCGGCGATGGCAGTGACGGCGGCAATGGTGGTGACGG
CACAAGCAGCGTCGTTGCCGATTTTCTCGTCAGGAACAGCGCTAACCCGT
CCGCCATGGTCGGCACAGGAAAAGTCCGGCCGCCGTGGGAACTGGCGTCG
CGGACGGAGATGGAACAGGCAGCGCTCCTCTCGGAATGGTGCTTCCGCCG
CACTTTTGAAGAGCTCGCCGACACCGGCCTCTTCCTGCTAGTGCCCATCA
TGTGGATGCGACACACTGCCGTGGCGGCCAGCATGGAGTACAACGAGGAG
CGGGGCGAGATGGCGGCCAAGACGTGGAGCGCCACCATGGCGCTGGCACC
CAACTGCCCGGGCCTGCTGGCATTCCACCCGGTGGAGCCACTGCGGGCAT
GCGCGCTGGCGACAACATGCGGGAAGAATGCCGCGGCGATGGACAGCGCC
TATGAGACCTTCAAGGAGTGCTGGGGCGTCTGCCAGCGCAACGCGGGCGG
GTGCTTCGATCCTGCGGCGCGCATCGACTCGCGAGCGCTGATTCGCGAGA
AGCTCTGGAGCGGGAAATACAAACCCATCTTCGTGAAGGGCGCCGAAGTC
GTCTTGGACTGGAGCCCGGCGGAACCGGCGGACGCGGCGGACGCGGCGGC
AGCGGGCGGCGCGGCGGCGGCGGTGCACGACGCGGAAGCGGCGGCAGCGG
CAACGGCTAGTGACGCGGCAGTGGCGGTGCCAGCGGTGGGGGTCGGTAAC
GCAGTGCCGGCGCGGACAGCGGCGGCATCTGCGCCGCCGGCGACGGCAGC
CCCGACTGCATCAGCGTCGGCGGCGGTGGCAGGAGCGGCAGCTGCAGCGG
CGGCGGCGGCGACGTCAGTCGACTGGGCATACGGCGCGAACACGGCGACG
TGGCACGATGTGATCGTGTCGACCGCGGCGGAGCCGGCGTTCGCTGATGT
TGCACCGGCGTTGGCGGCCCCGCTTGCGGCGCCGCACCCAAGCCCGTTTG
CAGGTGCCGGCGCCGGCGCCAGTGGCCCGGCGCATGGTTGA
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