mRNA_P-wetherbeei_contig17387.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17387.1.1
Unique NamemRNA_P-wetherbeei_contig17387.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17387.1.1 vs. uniprot
Match: UPI00199B7359 (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199B7359)

HSP 1 Score: 84.3 bits (207), Expect = 3.750e-20
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 MIRYTFFVLTVLGSAATAIAAIAPASEMPLANAKNVTVIEMNQAFPVYGPIVVKQCAVENCSDVEA 198
            MIRYT FVL V+G+AATAIAA+ PA+    + + NVTVI  N+AFPV+GPI+V+QCA E+CSDV++
Sbjct:    1 MIRYTLFVLAVIGTAATAIAAVQPATNSAASRSTNVTVIHKNEAFPVFGPIIVEQCAKEDCSDVQS 66
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BLAST of mRNA_P-wetherbeei_contig17387.1.1 vs. uniprot
Match: A0A847ZV54_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZV54_9HYPH)

HSP 1 Score: 72.0 bits (175), Expect = 2.560e-15
Identity = 36/63 (57.14%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MIRYTFFVLTVLGSAATAIAAIAPASEMPLANAKNVTVIEMNQAFPVYGPIVVKQCAVENCSD 189
            M RYTFFVL V+G+AATAIA+IAP +    ++  N+TV+  NQAFP +GP+V ++CAVE+CS+
Sbjct:    1 MTRYTFFVLAVIGTAATAIASIAPTTHT--SSPANITVVAKNQAFPQFGPLVFEECAVEDCSE 61
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BLAST of mRNA_P-wetherbeei_contig17387.1.1 vs. uniprot
Match: A0A847ZYH2_9HYPH (Uncharacterized protein n=1 Tax=Phyllobacteriaceae bacterium TaxID=1871068 RepID=A0A847ZYH2_9HYPH)

HSP 1 Score: 68.2 bits (165), Expect = 8.570e-14
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    1 MIRYTFFVLTVLGSAATAIAAIAPASEMPLANAKNVTVIEMNQAFPVYGPIVVKQCAVENCSD 189
            M+RYT F+  V GSAATAIA+IAP  ++ ++N  N+T++  NQAFP +G I++++CA E+CS+
Sbjct:    1 MVRYTLFLAIVFGSAATAIASIAP--DVAISNPANITIVAKNQAFPQFGDIILEECATEDCSE 61
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BLAST of mRNA_P-wetherbeei_contig17387.1.1 vs. uniprot
Match: UPI0019921EEB (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019921EEB)

HSP 1 Score: 45.8 bits (107), Expect = 7.840e-5
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:  103 NVTVIEMNQAFPVYGPIVVKQCAVENCSD 189
            NVT+IE NQAFPV+GPI V+ C  E+CS+
Sbjct:   47 NVTIIEKNQAFPVFGPITVEVCENEDCSE 75
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17387.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
UPI00199B73593.750e-2062.12Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A847ZV54_9HYPH2.560e-1557.14Uncharacterized protein n=1 Tax=Phyllobacteriaceae... [more]
A0A847ZYH2_9HYPH8.570e-1450.79Uncharacterized protein n=1 Tax=Phyllobacteriaceae... [more]
UPI0019921EEB7.840e-565.52Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17387contigP-wetherbeei_contig17387:354..554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size201
Hectar predicted targeting categorysignal peptide
Exons1
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.9548557-CDS-P-wetherbeei_contig17387:353..5541683186115.9548557-CDS-P-wetherbeei_contig17387:353..554Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17387 354..554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17387.1.1prot_P-wetherbeei_contig17387.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17387 354..554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17387.1.1

>prot_P-wetherbeei_contig17387.1.1 ID=prot_P-wetherbeei_contig17387.1.1|Name=mRNA_P-wetherbeei_contig17387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MIRYTFFVLTVLGSAATAIAAIAPASEMPLANAKNVTVIEMNQAFPVYGP
IVVKQCAVENCSDVEA*
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mRNA from alignment at P-wetherbeei_contig17387:354..554+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17387.1.1 ID=mRNA_P-wetherbeei_contig17387.1.1|Name=mRNA_P-wetherbeei_contig17387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig17387:354..554+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCGCTACACTTTCTTCGTACTCACAGTTCTTGGATCGGCCGCAAC
TGCAATTGCTGCCATCGCCCCTGCCAGTGAAATGCCCTTGGCCAACGCCA
AGAATGTCACGGTTATCGAAATGAACCAGGCTTTCCCGGTTTACGGCCCC
ATCGTTGTTAAGCAGTGCGCCGTTGAGAACTGCTCCGACGTGGAAGCCTG
A
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17387:354..554+

>mRNA_P-wetherbeei_contig17387.1.1 ID=mRNA_P-wetherbeei_contig17387.1.1|Name=mRNA_P-wetherbeei_contig17387.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig17387:354..554+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCCGCTACACTTTCTTCGTACTCACAGTTCTTGGATCGGCCGCAAC
TGCAATTGCTGCCATCGCCCCTGCCAGTGAAATGCCCTTGGCCAACGCCA
AGAATGTCACGGTTATCGAAATGAACCAGGCTTTCCCGGTTTACGGCCCC
ATCGTTGTTAAGCAGTGCGCCGTTGAGAACTGCTCCGACGTGGAAGCCTG
A
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