mRNA_P-wetherbeei_contig17381.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17381.1.1
Unique NamemRNA_P-wetherbeei_contig17381.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: D7FGY0_ECTSI (Nop domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FGY0_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.020e-59
Identity = 101/129 (78.29%), Postives = 116/129 (89.92%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHF 387
            FVL+E+ASGYALLEV E EEVGSLLEEVQ++V D QRF RTVKLK FQPFTTAENALEN+NAISEQ+VT+DLK FLEMNLPKVKKSK+A FQLGCIEP LASAIQ+    PCR+D+TV+EI+RG+R+HF
Sbjct:    4 FVLYESASGYALLEVMEAEEVGSLLEEVQQAVLDPQRFCRTVKLKGFQPFTTAENALENVNAISEQIVTDDLKNFLEMNLPKVKKSKSASFQLGCIEPGLASAIQDRLGFPCRSDETVKEIIRGIRVHF 132
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: W7TM46_9STRA (Nucleolar protein NOP56 like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TM46_9STRA)

HSP 1 Score: 168 bits (425), Expect = 2.220e-51
Identity = 82/129 (63.57%), Postives = 108/129 (83.72%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHF 387
            +VL+E+ASGYAL E+ + +++ SL +EVQ SV D+QRFGRTVKLKAFQPFT+AENALEN+NA+SE ++++DLK+FLE+NLPKVKK+   G  LG IEPAL + IQE    PC++D++ RE+LRGVRLHF
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKA-GKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHF 131
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: K8YR72_NANGC (Nucleolar protein nop56 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YR72_NANGC)

HSP 1 Score: 169 bits (428), Expect = 2.910e-51
Identity = 83/131 (63.36%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFAK 393
            +VL+E+ASGYAL E+ + +++ SL +EVQ SV D+QRFGRTVKLKAFQPFT+AENALEN+NA+SE ++++DLK+FLE+NLPKVKK+   G  LG IEPAL + IQE    PC++D++ RE+LRGVRLHF K
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKA-GKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHK 133
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A4D9D682_9STRA (Nop domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D682_9STRA)

HSP 1 Score: 169 bits (428), Expect = 8.780e-48
Identity = 83/131 (63.36%), Postives = 109/131 (83.21%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFAK 393
            +VL+E+ASGYAL E+ + +++ SL +EVQ SV D+QRFGRTVKLKAFQPFT+AENALEN+NA+SE ++++DLK+FLE+NLPKVKK+   G  LG IEPAL + IQE    PC++D++ RE+LRGVRLHF K
Sbjct:    4 YVLYESASGYALFELIQHDDIASLTDEVQASVQDVQRFGRTVKLKAFQPFTSAENALENINAVSEHILSDDLKHFLELNLPKVKKA-GKGTTLGVIEPALGTVIQETLSFPCKSDESTREVLRGVRLHFHK 133
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A7S1U4K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4K6_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.700e-45
Identity = 81/131 (61.83%), Postives = 102/131 (77.86%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAG-FQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFA 390
            ++L E+ASGYAL E  E EE+GS  +EVQ +VAD+ RFGR VKLKAFQPFT+ ENAL N+NA+SE +V+ DL  FLEMN+PK  K K+     LGC+ PALASA+QE+  + CR+DD +RE+LRGVRLHFA
Sbjct:    7 YLLFESASGYALFEAVEFEEIGSSTDEVQAAVADVGRFGRAVKLKAFQPFTSPENALANINAVSEHVVSEDLSAFLEMNVPKAGKKKSKSKVSLGCVAPALASAVQESLGITCRSDDIIREMLRGVRLHFA 137
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A5D6Y2J2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2J2_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.600e-45
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFAK 393
            FVL E+ASGYAL EV E EE+G+LL EVQ+SV+DL +FGR VKLKAFQPFT+AENALEN+N ISE +V +DLK FLEMNLPKVK  K A F LG  + +LA AI + T+ PC +++T  EILRGVR HF+K
Sbjct:   31 FVLFESASGYALFEVVEHEEIGTLLAEVQESVSDLSKFGRIVKLKAFQPFTSAENALENINNISEGIVGDDLKNFLEMNLPKVKTGKKAKFSLGIQDKSLAQAISDETKAPCNSNETTVEILRGVRFHFSK 161
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A8K1FGU2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGU2_PYTOL)

HSP 1 Score: 158 bits (399), Expect = 1.460e-43
Identity = 83/130 (63.85%), Postives = 100/130 (76.92%), Query Frame = 1 
Query:    4 VLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFAK 393
            VL E+ASGYAL EV E EE+GSLL+EVQ+SV DL +FGR VKLKAFQPFT+AENALEN+N ISE ++ +DLK FLEMNLPKVK  K A F LG  +  LA A+ +   VP  +++T  EILRGVR HF+K
Sbjct:    7 VLFESASGYALFEVVEHEEIGSLLDEVQQSVNDLAKFGRIVKLKAFQPFTSAENALENINNISEGLLGDDLKNFLEMNLPKVKAGKKAKFTLGVFDKNLAQAVADNLSVPANSNETTLEILRGVRFHFSK 136
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A7S2CNL1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNL1_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.510e-43
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKS--KAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHF 387
            +VL E+ASGY L+EV E EE+ SL EEVQ SV DL++F R VKLKAFQPF  AE ALEN+NAISE MVT+ L +FLE NLP VKKS  K   F LG I+ + ASA+QEA+  P R+DDTVRE++RG+R HF
Sbjct:    5 YVLFESASGYCLVEVVEYEEIASLKEEVQASVQDLKKFSRMVKLKAFQPFANAEEALENINAISEHMVTDQLTHFLEANLPSVKKSSKKQKDFALGVIDASFASAVQEASGFPVRSDDTVREVVRGMRTHF 135
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: K3WJW5_GLOUD (Nop domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WJW5_GLOUD)

HSP 1 Score: 158 bits (399), Expect = 1.550e-43
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHFAK 393
            FVL E+ASGYAL EV E EEVG LL+EVQ+SV DL +FGR VKLKAFQPFT+AENALEN+N ISE ++  DLK FLEMNLPKVK  K A F LG  +  L+ +I +  + PC +++T  EILRGVR HF+K
Sbjct:    2 FVLFESASGYALFEVVEHEEVGVLLDEVQQSVNDLAKFGRIVKLKAFQPFTSAENALENINNISEGILGEDLKNFLEMNLPKVKSGKKAKFTLGIQDKNLSQSISDELKAPCNSNETTLEILRGVRFHFSK 132
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BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Match: A0A2P4X144_9STRA (Nucleolar protein Nop56 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X144_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.920e-43
Identity = 80/129 (62.02%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:    1 FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPFTTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPALASAIQEATEVPCRADDTVREILRGVRLHF 387
            FVL E+ASGYA+ EV E EE+G LL EVQ +VAD+  FGR VKLKAFQPFT+AENALEN+N +SE +V +DLK FLEMNLPKVK  K A F LG  +  LA AI +    PC   +T  EI+RGVR+HF
Sbjct:    6 FVLFESASGYAIFEVVENEEIGGLLAEVQAAVADVSSFGRIVKLKAFQPFTSAENALENINNVSEGLVGDDLKNFLEMNLPKVKAGKKAKFALGVQDKGLAQAISDELNAPCNTSETTLEIVRGVRMHF 134
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17381.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGY0_ECTSI1.020e-5978.29Nop domain-containing protein n=2 Tax=Ectocarpus T... [more]
W7TM46_9STRA2.220e-5163.57Nucleolar protein NOP56 like protein n=1 Tax=Nanno... [more]
K8YR72_NANGC2.910e-5163.36Nucleolar protein nop56 n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D682_9STRA8.780e-4863.36Nop domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S1U4K6_9STRA2.700e-4561.83Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A5D6Y2J2_9STRA4.600e-4565.65Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1FGU2_PYTOL1.460e-4363.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2CNL1_9STRA1.510e-4363.36Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
K3WJW5_GLOUD1.550e-4363.36Nop domain-containing protein n=1 Tax=Globisporang... [more]
A0A2P4X144_9STRA1.920e-4362.02Nucleolar protein Nop56 (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17381contigP-wetherbeei_contig17381:130..814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FGY0
PFAMsNOP5NT,Nop
Model size396
Max annot lvl2759|Eukaryota
KEGG koko:K14564
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030515,GO:0030684,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons2
Evalue1.67e-60
EggNOG OGsCOG1498@1|root,KOG2573@2759|Eukaryota
Ec32 ortholog descriptionNOP56 subunit of the C/D ribonucleoprotein complex
Ec32 orthologEc-11_001050.1
DescriptionsnoRNA binding
Cds size396
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.8696527-CDS-P-wetherbeei_contig17381:129..3061683186115.8696527-CDS-P-wetherbeei_contig17381:129..306Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17381 130..306 -
1683186115.8803604-CDS-P-wetherbeei_contig17381:595..8141683186115.8803604-CDS-P-wetherbeei_contig17381:595..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17381 596..814 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17381.1.1prot_P-wetherbeei_contig17381.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17381 130..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17381.1.1

>prot_P-wetherbeei_contig17381.1.1 ID=prot_P-wetherbeei_contig17381.1.1|Name=mRNA_P-wetherbeei_contig17381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=132bp
FVLHEAASGYALLEVTEVEEVGSLLEEVQKSVADLQRFGRTVKLKAFQPF
TTAENALENMNAISEQMVTNDLKYFLEMNLPKVKKSKAAGFQLGCIEPAL
ASAIQEATEVPCRADDTVREILRGVRLHFAK*
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mRNA from alignment at P-wetherbeei_contig17381:130..814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17381.1.1 ID=mRNA_P-wetherbeei_contig17381.1.1|Name=mRNA_P-wetherbeei_contig17381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=685bp|location=Sequence derived from alignment at P-wetherbeei_contig17381:130..814- (Phaeothamnion wetherbeei SAG_119_79)
TTCGTGCTGCACGAGGCAGCCTCTGGCTACGCGCTGCTGGAGGTGACGGA
GGTCGAAGAGGTCGGCAGCCTCCTAGAGGAGGTGCAGAAGAGCGTGGCAG
ACCTGCAGCGCTTCGGGCGAACGGTCAAGCTCAAGGCATTCCAGCCGTTC
ACCACCGCCGAGAACGCCCTGGAAAACATGAACGCCATCTCTGAGCAGAT
GGTCACGAACGACCTCAAGGTCAGAATCGTCCCAACCACATGTGTTTTCC
TTTACGTCTTCTTTTTCTAGCGACATTTTCTGGTCTTCGCTTTTCGCTGC
TGCGGCGTTCCGGGGATTTTCGAGTCGAGGCATTTCACATACCTTGAAAG
GATGATGGTTCGTTTTGATTTGGTGGGGTATGGACATAAAATCCTGTCAG
GCATTCAAATGCCGCCCCATTGTGTCAGAATTGTCCTTTCCTTGCGCGCT
ACGTTGCCCCCCGCAAAATTGTACATGTATATATATTTGCCTCCGTCTTC
TCTACCAGTACTTCCTGGAGATGAATCTGCCCAAGGTAAAGAAGTCGAAG
GCGGCAGGCTTCCAGCTGGGCTGCATCGAGCCGGCCCTTGCCAGCGCCAT
CCAGGAAGCCACCGAGGTGCCGTGCCGCGCTGACGACACCGTCCGCGAGA
TCCTCCGGGGCGTGCGCCTCCACTTTGCCAAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17381:130..814-

>mRNA_P-wetherbeei_contig17381.1.1 ID=mRNA_P-wetherbeei_contig17381.1.1|Name=mRNA_P-wetherbeei_contig17381.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=396bp|location=Sequence derived from alignment at P-wetherbeei_contig17381:130..814- (Phaeothamnion wetherbeei SAG_119_79)
TTCGTGCTGCACGAGGCAGCCTCTGGCTACGCGCTGCTGGAGGTGACGGA
GGTCGAAGAGGTCGGCAGCCTCCTAGAGGAGGTGCAGAAGAGCGTGGCAG
ACCTGCAGCGCTTCGGGCGAACGGTCAAGCTCAAGGCATTCCAGCCGTTC
ACCACCGCCGAGAACGCCCTGGAAAACATGAACGCCATCTCTGAGCAGAT
GGTCACGAACGACCTCAAGTACTTCCTGGAGATGAATCTGCCCAAGGTAA
AGAAGTCGAAGGCGGCAGGCTTCCAGCTGGGCTGCATCGAGCCGGCCCTT
GCCAGCGCCATCCAGGAAGCCACCGAGGTGCCGTGCCGCGCTGACGACAC
CGTCCGCGAGATCCTCCGGGGCGTGCGCCTCCACTTTGCCAAGTGA
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