mRNA_P-wetherbeei_contig1738.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1738.4.1
Unique NamemRNA_P-wetherbeei_contig1738.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A1F4F6Q0_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 TaxID=1797501 RepID=A0A1F4F6Q0_9PROT)

HSP 1 Score: 691 bits (1782), Expect = 7.320e-243
Identity = 359/576 (62.33%), Postives = 446/576 (77.43%), Query Frame = 1
Query:   55 DRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELP 1782
            +R+D   VLA +V+ LY Q  LGI  T  +G +  FEL+   ++ ELV+FW  L++ +  A   L+ AY+ + +++  P+ WLR   I AL +G  WGFA AVFFP HTDEQQVFLAF+L GM+A G+P++A+ W ++ALYAAG++ PF  VL TFG+RLFTE++ ++P+F+AIN ++AYR+ +VF SGYRLR +YGRLTEDY+ LNQRLERQL+ELEE RRQVEASGRKL+LFAER+PIAVLELDA+G I +VN   + LFGY A+EL+  G   + LV+PE H EF  RWK L++T  S AGL I N RRDGI+VVCEWTVTPLVN EG II+++AQGRD+T Q EA+R+K+EFTSTLSHELRTPLTSIIGSLQL+N G++GD+  D AELT VAERNGQRLLDLIND+LDIEKI+SGK+T+  E +P+D++V E++ LN+ F +R+ V+        G  V AD KRLLQVMTNL+SN+ KFSP GG+V+I LR   P V V  V DRG GIPE+FR RIFGRFAQADS  TR KGGTGLGLAICKRLIEMM G IGF DR GGGTTFWFELP
Sbjct:   25 ERTDPRVVLAARVDQLYGQMWLGILATFALGAIATFELWEL-RLRELVLFWWGLVLLITAASAALLYAYRRSPDKEANPEQWLRWLGIAALAAGANWGFAAAVFFPSHTDEQQVFLAFLLVGMTAAGIPVYASSWPIFALYAAGILAPFTYVLATFGNRLFTEIALLVPMFYAINVAIAYRLTRVFHSGYRLRHAYGRLTEDYSVLNQRLERQLVELEEARRQVEASGRKLQLFAERAPIAVLELDAQGAITEVNHATELLFGYAASELI--GRDFRFLVKPEFHDEFYRRWKRLVDTHASEAGL-IRNTRRDGIDVVCEWTVTPLVNPEGTIIAVVAQGRDVTAQREAERVKKEFTSTLSHELRTPLTSIIGSLQLINTGIVGDVPPDVAELTVVAERNGQRLLDLINDLLDIEKIESGKVTMAPEVLPVDEVVREAMVLNRAFGERFKVRFEMTSGLPGREVTADRKRLLQVMTNLLSNAVKFSPEGGAVEIGLRENGPNVRVA-VQDRGPGIPESFRTRIFGRFAQADSTATRQKGGTGLGLAICKRLIEMMHGKIGFEDRAGGGTTFWFELP 595          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A537GAA2_9PROT (Histidine kinase n=6 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A537GAA2_9PROT)

HSP 1 Score: 690 bits (1781), Expect = 1.380e-242
Identity = 357/591 (60.41%), Postives = 450/591 (76.14%), Query Frame = 1
Query:   16 TAQTITAPADSSRDRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIH 1788
            T       A  SR+RSD   VLAD+VE LY Q PLGI  T++IG + A EL    +I ELV FW  L++ V      L  AY+ + ++    + WLR   IGA  +GVTWGF  +VFFP H DE+QVFLAF+L+G+ +GG+P++AA W ++A YAAG+  PF  VL TFG+RLF E++ ++P+F+ ++ ++AYR+N+VF SGYRLR +YG+LTEDY+ LNQRLE QL+ELEE RRQVEASGRKL LFAER+PIAVLE+D +G +  VN  A+ LFGY AAEL+  G  +K LV PE HAEFD+ W  + ETR+ +AGL+I N RRDGIE+VCEWTVTPLVN EG+I+S+IAQG+D+T+Q+EA+R+K+EFTSTLSHELRTPLTSIIGSLQLVN+GV G+L++D +ELT VAERNGQRLLD+INDILDIEKI+SG +++  E + +D LV ES+ LN+GF +R+ V+  + G   G  V  D KRLLQVMTNL+SN+AKFSP  G VDI L  ++  + V  V DRG GIPE FR+RIFGRFAQADS  +R KGGTGLGLAICKR+IE+M G IGF DR GGGTTFWFELP H
Sbjct:   14 TGSAAAGVAAGSRERSDPRVVLADRVEQLYSQLPLGIAATVVIGLISALEL-REGRIIELVAFWGGLLLLVSALHAALYFAYRRSADKLAQGEQWLRWLGIGAFAAGVTWGFGASVFFPSHADERQVFLAFLLSGVMSGGIPVYAASWPIFAAYAAGIAIPFTYVLATFGNRLFAEIALLVPLFYGVSVAIAYRLNRVFHSGYRLRHAYGKLTEDYSVLNQRLELQLVELEEARRQVEASGRKLALFAERAPIAVLEIDPQGIVTAVNHAAELLFGYAAAELI--GGHVKRLVLPEFHAEFDSHWTRMTETRQPLAGLRIRNSRRDGIELVCEWTVTPLVNPEGDIVSVIAQGQDVTRQIEAERMKKEFTSTLSHELRTPLTSIIGSLQLVNSGVAGELSRDVSELTLVAERNGQRLLDIINDILDIEKIESGTISMAPEVLAIDGLVRESIVLNEGFGERFKVRFEARGELPGREVYVDRKRLLQVMTNLLSNAAKFSPEWGKVDITLEESDANIRV-GVHDRGPGIPEEFRSRIFGRFAQADSTASRQKGGTGLGLAICKRMIELMHGRIGFEDRAGGGTTFWFELPKH 600          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A1F4F901_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F901_9PROT)

HSP 1 Score: 683 bits (1762), Expect = 7.920e-240
Identity = 354/581 (60.93%), Postives = 445/581 (76.59%), Query Frame = 1
Query:   52 RDRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIHNA 1794
            RDR+D   VLAD+V  LY Q P+ I  T + G +   EL+    + ELV+FW  L++   +A   L +AY+ A ++      WLRR  I A  +G +WGFAGAVFF   TDEQQVFLAF+ AG+++ G+P++AA W V+ALYAAG++ PF  VL TFG+RLF E++ ++P+F+A+N ++A+R+NQVF SGYRLR +YGRLTEDY+ LNQRLE+QL+ELEE RRQVEASGRKL LFAER+PIAVLELD + R+ +VNR A+ LFGY A ELV+    +K LV PE HAEFDA W  LI +RE  AG++I NPRRDG++VVCEWTVTPLVN EG I+++IAQG+DIT+ LEA+RLK+EFTSTLSHELRTPLTSIIGSLQL+N+GV+G++ +D AELT +AERNGQRLLDLINDILDIEKI+SGKLT+  E   + +LV E++ LN+ F +R+ V+  + G  +   V+AD KRLLQVMTNL+SN+ KFSP GG V++ +    P + V  V DRG GIPE FR+RIFGRFAQADS   R K GTGLGLAICKRL+E+M G IGF DR GGGTTFWFELP H A
Sbjct:   21 RDRADPRLVLADRVNQLYNQLPVSIAATFVAGAIATVELWGQ-WLKELVLFWWALVLAFTVAATSLAIAYRRAADKVEEAAEWLRRLGIAAFANGASWGFAGAVFFRSLTDEQQVFLAFLFAGIASVGIPVYAASWPVFALYAAGILAPFAYVLATFGNRLFIEIALLVPVFYAVNVAIAWRLNQVFDSGYRLRHAYGRLTEDYSVLNQRLEKQLVELEEARRQVEASGRKLALFAERAPIAVLELDPQARVLEVNRAAEILFGYAAGELVDG--HVKKLVHPEFHAEFDANWAKLISSREPQAGVRIRNPRRDGLDVVCEWTVTPLVNTEGRIVAVIAQGQDITRHLEAERLKKEFTSTLSHELRTPLTSIIGSLQLINSGVMGEVGRDVAELTTIAERNGQRLLDLINDILDIEKIESGKLTMNPEVFGLGELVREALVLNKAFGERFGVRFEANGPIAARPVHADRKRLLQVMTNLLSNATKFSPEGGVVEVTMEERGPSLRV-GVHDRGPGIPENFRHRIFGRFAQADSTTARQKSGTGLGLAICKRLVELMQGRIGFEDRAGGGTTFWFELPRHVA 597          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A521YPI7_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YPI7_9PROT)

HSP 1 Score: 681 bits (1758), Expect = 3.200e-239
Identity = 358/575 (62.26%), Postives = 441/575 (76.70%), Query Frame = 1
Query:   58 RSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELP 1782
            R+D   VLA +VE LY Q  LGI  T  IG +  FEL+   ++ ELV+FW  L++ +  A  GL+ AY+  ++++  P+ WLR   I AL +G  WGFAGAVFFP HTDEQQVFLAF+L GM+A G+P++AA W ++ALYAAG + PF  VL TFG+RLFTE++ ++P+F+AIN ++AYR+ QVF SGYRLR +YGRLT DY+ LNQRLERQL+EL+E RRQVEASGRKL+LFAER+PIAVLELDA G I +VN  A+ LFGY   EL+  G     LVRPE+H EF ARWK + E+  S AG+ I N RRDGI+++CEWTVTPLVN EG II+++AQGRDIT Q EA+R+K+EFTSTLSHELRTPLTSIIGSLQLVN G++GD+  D +ELT VAERN QRLLDLIND+LDIEK++SGKLT+  E + +D++V E++ LN+ F +R+ V         G  V AD KRLLQVMTNL+SN+AKFSP GG+V+I LR  N   V V V DRG GIPE+FR+RIFGRFAQADS  TR KGGTGLGLAICKRL+E+M G IGF  R GGGTTFWFELP
Sbjct:   26 RTDPRAVLAARVEQLYGQMWLGILTTFAIGAIATFELWEL-RLRELVLFWWGLVLLITAASAGLLYAYRSRRDKEADPEQWLRWLGIAALAAGANWGFAGAVFFPSHTDEQQVFLAFLLTGMTAAGIPVYAASWPIFALYAAGALAPFTYVLATFGNRLFTEIALLVPMFYAINVAIAYRLTQVFHSGYRLRHAYGRLTRDYSVLNQRLERQLVELDEARRQVEASGRKLQLFAERAPIAVLELDANGAITEVNHAAELLFGYAGGELI--GRHFSFLVRPEHHDEFKARWKRIAESHASEAGV-IRNTRRDGIDLLCEWTVTPLVNREGTIIAVVAQGRDITAQREAERIKKEFTSTLSHELRTPLTSIIGSLQLVNTGIVGDVPPDVSELTVVAERNSQRLLDLINDLLDIEKMESGKLTMAPEVLAIDEVVREAMVLNKAFGERFKVNFEMQSGLPGSEVTADRKRLLQVMTNLLSNAAKFSPEGGAVEIALRE-NGSNVRVAVQDRGPGIPESFRSRIFGRFAQADSTATRQKGGTGLGLAICKRLVELMHGKIGFEARAGGGTTFWFELP 595          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: UPI00199165A9 (PAS domain-containing sensor histidine kinase n=1 Tax=Candidatus Parcubacteria bacterium TaxID=2762014 RepID=UPI00199165A9)

HSP 1 Score: 676 bits (1744), Expect = 4.110e-237
Identity = 351/578 (60.73%), Postives = 441/578 (76.30%), Query Frame = 1
Query:   61 SDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYK-HAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIHN 1791
            +D  RVLAD+VE LY Q PLGI  T +I  V A+EL     + E+V+FWA L++ + +AR GL  +Y+ +A   D+A   WLR  AI AL +G TWGFAGAVFFP H DEQQVFLAF+LAGM AGG+P++A  W VYALYAAG++FPF  VL TFG++LF E++ ++P F+AIN  +AYR+N+VF SGYRLR +YG+LTEDYT LNQRLE+QL+ELE  RRQVEASGRKL LFAERSPIAV E DA+G +  VN  A+NLFG+ A+E+V +      +   E  ++  +R +  I  R+ V GL+  N RRDG EV+CEW +TPLVN +  ++S+I QGRDITQQLEA+R+KQEFTSTLSHELRTPLTSIIGSLQL+N+GV+GD+ KD  ELT +AERNGQRLLDLINDILD+EKI+SGKLTL  E + + +LV ES+ LN+G+A+R+ VKL +      + VNAD KR+ Q+MTNL+SN+ KFSP G  V++ +   +   + V+V D+G GIPE FRNRIFGRFAQAD + TR KGGTGLGLAICKRL+E+M G IGFSDR GGGTTFWFELP H+
Sbjct:   23 ADPRRVLADRVEQLYSQLPLGIVATFVISVVAAYELREGRYV-EIVLFWAGLVLLLTVARAGLYWSYRRNAGKVDSAQ--WLRWLAISALANGATWGFAGAVFFPSHADEQQVFLAFLLAGMVAGGVPMYAVSWPVYALYAAGIVFPFTYVLATFGNKLFAEIALLVPAFYAINVGIAYRLNEVFDSGYRLRHAYGKLTEDYTALNQRLEQQLVELEGARRQVEASGRKLALFAERSPIAVFEFDADGNVLSVNPAAENLFGFTASEMVARP-GTAFMFPGEMESQVASRGQSFIAERKPVFGLRYNNIRRDGSEVICEWNLTPLVNPDNQVVSVIIQGRDITQQLEAERIKQEFTSTLSHELRTPLTSIIGSLQLINSGVMGDIEKDTLELTTIAERNGQRLLDLINDILDVEKIESGKLTLNPEVLELGELVAESLTLNRGYAERFKVKLAAVAAPEHVKVNADRKRVHQIMTNLLSNAVKFSPEGSVVEVTMEYVDGSTLRVSVHDKGPGIPEDFRNRIFGRFAQADMSHTRQKGGTGLGLAICKRLVELMGGRIGFSDRDGGGTTFWFELPKHD 596          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A1F3YJC0_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YJC0_9PROT)

HSP 1 Score: 660 bits (1702), Expect = 9.980e-231
Identity = 348/594 (58.59%), Postives = 433/594 (72.90%), Query Frame = 1
Query:    1 NPGRMTAQTITAPADSSRDRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELP 1782
            +P     Q   A +   R  +D  R+LAD+V  LY Q PL I  + +I  + A+EL    +  E+VVFWA L+V + LA  GL   Y+ +  +      WLR   I AL  G TWGFAGAVFFP H DEQQVFLA V++ + A G+P++A  W +YA YAAG++FPF  VL TFG++LF E++ ++P F+ +N  +AYR+N VF SG+RLR +YG+LTEDYT LNQRLE+QL+ELEE RRQVEASGRKL LFAERSPIAV E D  GRI   N  A+ LFG+ + E+V +      L       +  ARW+ LI++RE V GL+++N RRDG E+ CEW++TPLVN E  +IS+I QGRDITQQLEA+R+KQEFTSTLSHELRTPLTSIIGSLQL+N+GVLG++ KD  ELT +AERNGQRLLDLINDILD+EKI+SGKLTLF E + + +LV ES+ LN+GFAD + V+L +AG  + + VNAD KRLLQVMTNL+SN+AKFSP G  VD+ L   +   V V V D G GIPE FR+RIFGRFAQAD + TR KGGTGLGL+ICKRL+EMM G IGFS R+G GTTFWFELP
Sbjct:    3 SPSTAAPQVSAAESIDLRQSADPRRILADRVRQLYSQMPLAIVGSFLISAIAAYEL-REGRFVEIVVFWAGLVVLLTLACAGLYWGYRKSARKIEEAAQWLRWLGISALAIGATWGFAGAVFFPSHADEQQVFLALVISLLVAAGIPIYAVSWPIYAAYAAGILFPFTYVLATFGNKLFAEIALIVPAFYLLNVGIAYRLNGVFDSGFRLRHAYGKLTEDYTALNQRLEQQLVELEEARRQVEASGRKLALFAERSPIAVFEFDPAGRILSANPAAETLFGFSSREMVGRP-GTDTLFPSGAKDDIRARWRSLIQSREPVFGLRLSNTRRDGAEITCEWSLTPLVNPENLVISVIVQGRDITQQLEAERMKQEFTSTLSHELRTPLTSIIGSLQLINSGVLGEIEKDTLELTTIAERNGQRLLDLINDILDVEKIESGKLTLFPEVLDLGELVNESLALNRGFADGFKVRLATAGELAQVRVNADRKRLLQVMTNLLSNAAKFSPEGSVVDVTLENIDGGKVRVGVHDCGPGIPEDFRDRIFGRFAQADMSYTRQKGGTGLGLSICKRLLEMMGGRIGFSGREGSGTTFWFELP 594          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A536WLW6_9PROT (Histidine kinase n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536WLW6_9PROT)

HSP 1 Score: 655 bits (1689), Expect = 8.120e-229
Identity = 353/593 (59.53%), Postives = 432/593 (72.85%), Query Frame = 1
Query:   10 RMTAQTITAPADSSRDRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIH 1788
            R  A  ITA     R R+D   V AD+VE LY Q PLG+  T++IG + A EL+    I ELV FW  L+  V +    L L Y++   R      WLR   IGA  +G  WGFAGAVFFP H DE+QVFLAF+LAG+ +GG+P++AA W ++A YAA +  P   VL TFG+RLF E++ +IP+F+A++ ++A+R+N VF+SGYRLR +Y              +RQL+EL+E RRQ+EASGRKL LF ERSPIAVLELDA G I+++N   + LFGY AAEL+  G+ +  LV  +   EFDA W+ L+ TRE +AGLK+ NPRRDG+ VVCEWTVTPLVN EG +IS+IAQGRDIT QLEA+RLK+EFTSTLSHELRTPLTSIIGSLQL+NAGVLG++ KD  ELTEVAERNGQRLLDLINDILDIEKI+SGKLTL  + + +D+LV E++ LN+GF +R+ V+    G  S   V+ADHKRLLQVMTNL+SN+AKFSP G  V+I        + V  V DRG GIPEAFR RIFGRF QADS  +R KGGTGLGLAICKRL+EMM G IGF DR+GGGTTFWFELP H
Sbjct:   21 RSVAAAITADI---RGRADPALVRADRVEQLYSQLPLGMAATVVIGVIAAVELHEGRLI-ELVYFWGSLVGLVVVLHGLLYLGYRNDARRHENTGQWLRWLGIGAFAAGAVWGFAGAVFFPSHADERQVFLAFLLAGVISGGIPMYAASWPIFAAYAAAIALPITYVLATFGNRLFAEIALLIPLFYAVSVAIAFRLNGVFLSGYRLRHAY--------------QRQLVELDEARRQIEASGRKLALFFERSPIAVLELDAAGIIQEINHAGELLFGYAAAELI--GQPVTRLVVAKYQGEFDAEWRKLVATREPLAGLKVRNPRRDGLTVVCEWTVTPLVNREGQLISVIAQGRDITAQLEAERLKKEFTSTLSHELRTPLTSIIGSLQLINAGVLGEVPKDVGELTEVAERNGQRLLDLINDILDIEKIESGKLTLNPQVIRVDELVREAIVLNKGFGERFKVRFEPRGELSPREVSADHKRLLQVMTNLLSNAAKFSPEGEVVEITTEELADWLRVA-VHDRGPGIPEAFRPRIFGRFNQADSTTSRQKGGTGLGLAICKRLVEMMQGRIGFQDREGGGTTFWFELPRH 592          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A537BKQ7_9PROT (Histidine kinase n=4 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537BKQ7_9PROT)

HSP 1 Score: 575 bits (1483), Expect = 6.350e-196
Identity = 302/579 (52.16%), Postives = 403/579 (69.60%), Query Frame = 1
Query:   61 SDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIHNAE 1797
            +D   VL ++ E +YR+    +G T ++  +L+  L+ S+ + EL++FW   ++ +    + L LAY+ + +    P  W+RR A GA   G  WGFA AVFFPG  D QQVF+AFV+A ++AGGLP+F+ VWW+YALYAAGVM PF  VL  +G+  F  L   +P+ +  N + AY++ + F S Y LR +Y RL+ D      +L  QL  L E  R+V+A GRKL LF+ER+PIAV E+D    I D+N  A+NLFGY A E+V +   I +L+ P++    D  W  L+        +     RRDG+E+ CEWT+TPLV+D+  +IS+I QGRDITQQ  A+R++ EFTSTLSHELRTPLTSIIGSLQL+ AG +G+++K+Q E+ E+AE+N QRLLDLIN++LDIEKI+SG+LTL  EPM +D L+ ES++LNQG+ADR+   L   G    ++V AD KRL+QVMTNL+SN+AKFSP   +VD+ + +    VV V VSDRG GIPEAFR RIFGRFAQADSAD+R KGGTGLGLAICKRL+EMM G +GF DR+GGGTTF+FELP+   E
Sbjct:    8 ADAPEVLKERCEYIYRRILPAVGATAVLSLLLSAFLWPSSPV-ELILFWQTAILLIAAGYWALALAYQRSGDAREHPQPWIRRAAFGAAALGAAWGFATAVFFPGG-DYQQVFIAFVVALVTAGGLPMFSTVWWIYALYAAGVMIPFNGVLFAYGTDFFHLLGAAVPLLYIANVATAYQLGKAFSSAYGLRSAYERLSADNAATQAQLGEQLDSLLEAHREVQAFGRKLALFSERAPIAVFEVDPRATILDMNPAAENLFGYAAPEMVGRN-CISMLLNPDDRESTDKWWGELVAQGRPATVVAERCLRRDGLELACEWTMTPLVDDDHRVISVILQGRDITQQRAAERMRSEFTSTLSHELRTPLTSIIGSLQLLRAGAIGEVSKEQDEMVEIAEKNSQRLLDLINEVLDIEKIESGQLTLVPEPMLLDALLGESLRLNQGYADRFRANLALHGEVPQVVVRADRKRLMQVMTNLLSNAAKFSPPNSAVDVTVAQKEA-VVRVEVSDRGPGIPEAFRGRIFGRFAQADSADSRVKGGTGLGLAICKRLVEMMQGRVGFEDREGGGTTFFFELPVMPPE 582          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A536T2R5_9PROT (Histidine kinase (Fragment) n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536T2R5_9PROT)

HSP 1 Score: 562 bits (1448), Expect = 2.350e-194
Identity = 293/474 (61.81%), Postives = 359/474 (75.74%), Query Frame = 1
Query:  367 FPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIH 1788
            FP H DE+QVFLAF+LAG+ +GG+P++AA W ++A Y A +  P   VL TFG+RLF E++ +IP+F+ ++ ++AYR+N VF+SGYRLR +Y              +RQ +ELEE RRQ+EASGRKL LFAERSPIAVLELD E  + DVN  A+ LFGY A EL   G S+K LV P  HAEFD  W+ L+ +R+ ++  KI N RRDG+ VVCEWTVTPLVN EG ++S+IAQGRD+T QLEA+R+K+EFTSTLSHELRTPLTSIIGSLQL+NAGVLG+  KD  +LTEVAERN QRLLD+INDILDIEKIDSGKLTL  + + +D LV E++ LN+GF +R+ V+  + G  +   V ADHKRLLQVMTNL+SN+AKFSP G  V+I      P + V  V DRG GIPEAFR+RIFGRF QADS  +R KGG GLGLAICKRL+EMM G IGF DR GGG+TFWFELP H
Sbjct:    1 FPSHADERQVFLAFLLAGVISGGIPMYAASWPLFAAYGAAIALPSTYVLATFGNRLFAEIALLIPLFYGVSVAIAYRLNGVFLSGYRLRHAY--------------QRQRVELEEARRQIEASGRKLALFAERSPIAVLELDGEAVVHDVNPAAELLFGYGADEL--SGASVKRLVLPTFHAEFDREWQRLVASRQPLSATKIRNLRRDGLTVVCEWTVTPLVNREGELVSVIAQGRDVTAQLEAERMKKEFTSTLSHELRTPLTSIIGSLQLINAGVLGEAPKDVMDLTEVAERNSQRLLDIINDILDIEKIDSGKLTLNPQVLRLDDLVREAMVLNKGFGERFKVRFEAKGELTKHEVKADHKRLLQVMTNLLSNAAKFSPEGEVVEITTEEQGPWLRVA-VHDRGPGIPEAFRSRIFGRFTQADSTTSRQKGGAGLGLAICKRLVEMMQGRIGFQDRDGGGSTFWFELPSH 457          
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Match: A0A1F4CP74_9PROT (Histidine kinase n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 TaxID=1797504 RepID=A0A1F4CP74_9PROT)

HSP 1 Score: 556 bits (1433), Expect = 2.970e-188
Identity = 296/577 (51.30%), Postives = 403/577 (69.84%), Query Frame = 1
Query:   76 VLADQVEILYRQAPLGIGVTLIIGTVLAFELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRFAIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWWVYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVFVSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAERSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHAEFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISIIAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDLNKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVEESVKLNQGFADRYNVKLTSAGLGSG----IMVNADHKRLLQVMTNLISNSAKFSPAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTRAKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIHNA 1794
            V  ++ + +YR+   G   + ++  +L+  L+ S +  +L+VFW +L++ +    +GL  AY+ A      P +W+RR A GA   G  WGFA AVFFPG  DEQ VF++FV+A ++AGGLPLF+ VWWVYALYAAGVM PF VVL   G+  F  L   +P+ +A N + A+++  VF + + LR +Y RL+ D  E+  +L  QL  L +  R+V+A GRKL LF+ER+PIAV E+D  G I D+N  A+NLFG+ + E+V +   I +++  E+ A  +  W+  + +      +     RRDG+ + CEWT+TPL ++EG + SI+ QGRDITQQ  ++R++ EFTSTLSHELRTPLTSI+GSL L+ +G LGD+ K+Q E+ E+AERNGQRLLDLIN++LDIEKI+SG+LTL  EP+ + +LV ES++LNQGFADR++V+L  A    G    + V AD KRL+QVMTNL+SN+AKFSP  GSV++ +   +  VV V V DRG GIP AFR RIFGRFAQADSAD+R KGGTGLGLAI KRL+EMM G +GF DR+GGGTTF+FELP+  A
Sbjct:   12 VARERCDFIYRRLAPGAAASAVLSLLLSGFLWRS-RAPDLIVFWQLLVLALAALLWGLSAAYRRAPAAREQPALWIRRAAFGAAALGAGWGFAAAVFFPGAQDEQ-VFISFVVALVTAGGLPLFSTVWWVYALYAAGVMLPFNVVLFAHGTDFFRLLGAAVPLLYAANVATAWQLGGVFSTAFGLREAYRRLSGDNAEIQAQLGEQLDSLLDAHREVQAYGRKLSLFSERAPIAVFEVDPRGTILDMNPAAENLFGWASPEMVGRN-IITMMLGVEDRAGTEKWWEEFVASARPATRVVENCMRRDGLALACEWTMTPLASEEGQVSSIVLQGRDITQQRASERVRSEFTSTLSHELRTPLTSILGSLSLLRSGALGDVPKEQDEIVEIAERNGQRLLDLINEVLDIEKIESGRLTLEPEPLELGELVRESLRLNQGFADRFHVRLALAAEMRGEVPQVTVRADRKRLMQVMTNLLSNAAKFSPPSGSVEVSVALKDA-VVRVGVGDRGPGIPSAFRGRIFGRFAQADSADSRIKGGTGLGLAISKRLVEMMQGRVGFEDREGGGTTFFFELPVMRA 584          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1738.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4F6Q0_9PROT7.320e-24362.33Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]
A0A537GAA2_9PROT1.380e-24260.41Histidine kinase n=6 Tax=unclassified Betaproteoba... [more]
A0A1F4F901_9PROT7.920e-24060.93Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]
A0A521YPI7_9PROT3.200e-23962.26Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]
UPI00199165A94.110e-23760.73PAS domain-containing sensor histidine kinase n=1 ... [more]
A0A1F3YJC0_9PROT9.980e-23158.59Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]
A0A536WLW6_9PROT8.120e-22959.53Histidine kinase n=3 Tax=Betaproteobacteria bacter... [more]
A0A537BKQ7_9PROT6.350e-19652.16Histidine kinase n=4 Tax=Betaproteobacteria bacter... [more]
A0A536T2R5_9PROT2.350e-19461.81Histidine kinase (Fragment) n=1 Tax=Betaproteobact... [more]
A0A1F4CP74_9PROT2.970e-18851.30Histidine kinase n=1 Tax=Betaproteobacteria bacter... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1738contigP-wetherbeei_contig1738:3669..5468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog301.JNHE01000010_gene3553
PFAMsGAF,GAF_2,HATPase_c,HisKA,PAS,PAS_3,PAS_9,dCache_3
Model size1800
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.73e-73
EggNOG OGsCOG2199@1|root,COG2202@1|root,COG5002@1|root,COG2199@2|Bacteria,COG2202@2|Bacteria,COG5002@2|Bacteria,1R5EN@1224|Proteobacteria,1RPI4@1236|Gammaproteobacteria,1YHI5@136841|Pseudomonas aeruginosa group
DescriptionDomain present in phytochromes and cGMP-specific phosphodiesterases.
Cds size1788
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.7994053-CDS-P-wetherbeei_contig1738:3668..54561683186115.7994053-CDS-P-wetherbeei_contig1738:3668..5456Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1738 3669..5456 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.8086584-UTR-P-wetherbeei_contig1738:5456..54681683186115.8086584-UTR-P-wetherbeei_contig1738:5456..5468Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1738 5457..5468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1738.4.1prot_P-wetherbeei_contig1738.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1738 3669..5456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1738.4.1

>prot_P-wetherbeei_contig1738.4.1 ID=prot_P-wetherbeei_contig1738.4.1|Name=mRNA_P-wetherbeei_contig1738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=596bp
MTAQTITAPADSSRDRSDRVRVLADQVEILYRQAPLGIGVTLIIGTVLAF
ELYSSAKIGELVVFWAILMVFVCLARYGLVLAYKHAQNRDTAPDVWLRRF
AIGALGSGVTWGFAGAVFFPGHTDEQQVFLAFVLAGMSAGGLPLFAAVWW
VYALYAAGVMFPFEVVLITFGSRLFTELSFMIPIFFAINCSVAYRMNQVF
VSGYRLRVSYGRLTEDYTELNQRLERQLIELEEVRRQVEASGRKLELFAE
RSPIAVLELDAEGRIKDVNREAQNLFGYPAAELVEKGESIKILVRPENHA
EFDARWKHLIETRESVAGLKITNPRRDGIEVVCEWTVTPLVNDEGNIISI
IAQGRDITQQLEADRLKQEFTSTLSHELRTPLTSIIGSLQLVNAGVLGDL
NKDQAELTEVAERNGQRLLDLINDILDIEKIDSGKLTLFSEPMPMDKLVE
ESVKLNQGFADRYNVKLTSAGLGSGIMVNADHKRLLQVMTNLISNSAKFS
PAGGSVDIELRRANPRVVVVTVSDRGSGIPEAFRNRIFGRFAQADSADTR
AKGGTGLGLAICKRLIEMMDGTIGFSDRQGGGTTFWFELPIHNAE*
back to top

mRNA from alignment at P-wetherbeei_contig1738:3669..5468-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1738.4.1 ID=mRNA_P-wetherbeei_contig1738.4.1|Name=mRNA_P-wetherbeei_contig1738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1800bp|location=Sequence derived from alignment at P-wetherbeei_contig1738:3669..5468- (Phaeothamnion wetherbeei SAG_119_79)
AATCCGGGCAGGATGACTGCCCAAACGATCACCGCCCCGGCGGACTCCAG CCGCGACCGAAGCGACCGCGTTCGCGTCCTCGCCGACCAGGTCGAGATCC TCTACCGGCAGGCCCCGCTGGGCATCGGTGTCACGCTCATCATCGGGACC GTGCTGGCCTTCGAGCTGTACTCGTCGGCCAAGATCGGCGAGCTGGTGGT GTTCTGGGCGATCCTGATGGTGTTCGTCTGCCTCGCCCGCTACGGGCTCG TGCTGGCCTACAAGCACGCCCAGAACCGCGACACGGCCCCGGACGTCTGG CTGCGGCGCTTCGCGATCGGCGCGCTCGGCAGCGGCGTCACATGGGGTTT CGCCGGCGCCGTATTCTTTCCCGGCCACACCGACGAGCAGCAGGTATTCC TCGCTTTCGTGCTCGCCGGCATGTCCGCGGGCGGACTGCCGCTGTTCGCC GCAGTCTGGTGGGTTTACGCCCTCTATGCCGCCGGGGTCATGTTCCCCTT CGAGGTGGTGCTGATCACCTTCGGGTCGCGCCTGTTCACCGAGCTGTCGT TCATGATCCCGATCTTCTTCGCGATCAACTGCTCGGTCGCCTACCGGATG AACCAGGTCTTCGTGTCGGGCTACCGGCTGCGGGTCTCCTACGGACGGTT GACGGAGGATTACACCGAGCTCAACCAGCGCCTGGAACGCCAGCTGATCG AACTCGAGGAGGTCCGCCGACAGGTCGAGGCCTCGGGCAGGAAGCTGGAG CTGTTCGCCGAGCGCTCGCCGATCGCGGTGCTCGAGCTCGACGCCGAAGG GCGCATCAAGGACGTGAACCGCGAGGCCCAGAACCTCTTCGGCTACCCGG CCGCGGAGCTCGTCGAGAAGGGCGAGTCGATCAAGATCCTCGTGCGCCCC GAGAACCATGCCGAGTTCGACGCGAGGTGGAAACACCTCATCGAAACCCG CGAATCGGTGGCCGGCCTGAAGATCACCAACCCGCGCCGCGACGGAATCG AGGTCGTCTGCGAGTGGACCGTGACTCCGCTGGTGAACGACGAAGGCAAC ATCATCTCGATCATCGCGCAGGGGCGCGACATCACCCAGCAGCTCGAGGC CGACCGCCTCAAGCAGGAGTTCACCTCCACCCTCTCCCACGAGCTGCGGA CCCCGCTCACCTCGATCATCGGGTCCCTCCAGCTGGTCAACGCGGGGGTC CTCGGCGACCTGAACAAGGACCAGGCCGAGCTGACCGAGGTGGCGGAACG CAACGGCCAGCGCCTGCTGGACCTTATCAACGACATCCTCGACATCGAGA AGATCGACTCAGGCAAGCTGACCCTCTTCTCCGAACCCATGCCGATGGAC AAGCTGGTCGAAGAATCCGTGAAGCTCAACCAGGGCTTCGCCGACCGCTA CAACGTGAAGCTGACCTCGGCCGGACTGGGCTCGGGCATCATGGTCAACG CCGACCACAAGCGGCTGCTGCAGGTGATGACCAACCTGATCTCCAACTCC GCCAAGTTCTCGCCCGCGGGCGGCAGCGTGGACATCGAGTTGCGCAGGGC CAACCCCCGCGTGGTCGTGGTAACCGTCAGCGACCGTGGGAGCGGCATCC CCGAAGCCTTCCGCAACCGGATCTTCGGACGTTTCGCCCAGGCGGACTCC GCCGACACGCGCGCCAAGGGCGGCACCGGTCTCGGCCTCGCCATCTGCAA GCGCCTCATCGAGATGATGGACGGCACCATCGGGTTCAGCGATCGCCAGG GCGGCGGCACGACCTTCTGGTTCGAGCTCCCCATCCACAACGCCGAATAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1738:3669..5468-

>mRNA_P-wetherbeei_contig1738.4.1 ID=mRNA_P-wetherbeei_contig1738.4.1|Name=mRNA_P-wetherbeei_contig1738.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1788bp|location=Sequence derived from alignment at P-wetherbeei_contig1738:3669..5468- (Phaeothamnion wetherbeei SAG_119_79)
ATGACTGCCCAAACGATCACCGCCCCGGCGGACTCCAGCCGCGACCGAAG
CGACCGCGTTCGCGTCCTCGCCGACCAGGTCGAGATCCTCTACCGGCAGG
CCCCGCTGGGCATCGGTGTCACGCTCATCATCGGGACCGTGCTGGCCTTC
GAGCTGTACTCGTCGGCCAAGATCGGCGAGCTGGTGGTGTTCTGGGCGAT
CCTGATGGTGTTCGTCTGCCTCGCCCGCTACGGGCTCGTGCTGGCCTACA
AGCACGCCCAGAACCGCGACACGGCCCCGGACGTCTGGCTGCGGCGCTTC
GCGATCGGCGCGCTCGGCAGCGGCGTCACATGGGGTTTCGCCGGCGCCGT
ATTCTTTCCCGGCCACACCGACGAGCAGCAGGTATTCCTCGCTTTCGTGC
TCGCCGGCATGTCCGCGGGCGGACTGCCGCTGTTCGCCGCAGTCTGGTGG
GTTTACGCCCTCTATGCCGCCGGGGTCATGTTCCCCTTCGAGGTGGTGCT
GATCACCTTCGGGTCGCGCCTGTTCACCGAGCTGTCGTTCATGATCCCGA
TCTTCTTCGCGATCAACTGCTCGGTCGCCTACCGGATGAACCAGGTCTTC
GTGTCGGGCTACCGGCTGCGGGTCTCCTACGGACGGTTGACGGAGGATTA
CACCGAGCTCAACCAGCGCCTGGAACGCCAGCTGATCGAACTCGAGGAGG
TCCGCCGACAGGTCGAGGCCTCGGGCAGGAAGCTGGAGCTGTTCGCCGAG
CGCTCGCCGATCGCGGTGCTCGAGCTCGACGCCGAAGGGCGCATCAAGGA
CGTGAACCGCGAGGCCCAGAACCTCTTCGGCTACCCGGCCGCGGAGCTCG
TCGAGAAGGGCGAGTCGATCAAGATCCTCGTGCGCCCCGAGAACCATGCC
GAGTTCGACGCGAGGTGGAAACACCTCATCGAAACCCGCGAATCGGTGGC
CGGCCTGAAGATCACCAACCCGCGCCGCGACGGAATCGAGGTCGTCTGCG
AGTGGACCGTGACTCCGCTGGTGAACGACGAAGGCAACATCATCTCGATC
ATCGCGCAGGGGCGCGACATCACCCAGCAGCTCGAGGCCGACCGCCTCAA
GCAGGAGTTCACCTCCACCCTCTCCCACGAGCTGCGGACCCCGCTCACCT
CGATCATCGGGTCCCTCCAGCTGGTCAACGCGGGGGTCCTCGGCGACCTG
AACAAGGACCAGGCCGAGCTGACCGAGGTGGCGGAACGCAACGGCCAGCG
CCTGCTGGACCTTATCAACGACATCCTCGACATCGAGAAGATCGACTCAG
GCAAGCTGACCCTCTTCTCCGAACCCATGCCGATGGACAAGCTGGTCGAA
GAATCCGTGAAGCTCAACCAGGGCTTCGCCGACCGCTACAACGTGAAGCT
GACCTCGGCCGGACTGGGCTCGGGCATCATGGTCAACGCCGACCACAAGC
GGCTGCTGCAGGTGATGACCAACCTGATCTCCAACTCCGCCAAGTTCTCG
CCCGCGGGCGGCAGCGTGGACATCGAGTTGCGCAGGGCCAACCCCCGCGT
GGTCGTGGTAACCGTCAGCGACCGTGGGAGCGGCATCCCCGAAGCCTTCC
GCAACCGGATCTTCGGACGTTTCGCCCAGGCGGACTCCGCCGACACGCGC
GCCAAGGGCGGCACCGGTCTCGGCCTCGCCATCTGCAAGCGCCTCATCGA
GATGATGGACGGCACCATCGGGTTCAGCGATCGCCAGGGCGGCGGCACGA
CCTTCTGGTTCGAGCTCCCCATCCACAACGCCGAATAG
back to top