mRNA_P-wetherbeei_contig17375.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17375.1.1
Unique NamemRNA_P-wetherbeei_contig17375.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A371B8F8_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B8F8_9HYPH)

HSP 1 Score: 372 bits (954), Expect = 2.770e-126
Identity = 190/279 (68.10%), Postives = 218/279 (78.14%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIA 864
            MTNIPTDLLRTFVAVVD RSFTKAA SLGVTQPAVSAQIKRLQ LLGDDIFDR+ QGVSLT HGEIV++YARRLLSINDQIVHL G G  PEL IR+GTSSDY   +LP  LA+FR R+P VRF +   + +PL RQLRDGEIDL + LS   P DA    A  +VWVRG N R DP  PVPL+S G+P +YH+    AL+AAG+ WE+VF+GP + SL GAVAAGLGVM I RRRA +DG++I +D PLP L   Y GI+VREGGAR +YEQLAD+IA
Sbjct:    1 MTNIPTDLLRTFVAVVDNRSFTKAANSLGVTQPAVSAQIKRLQSLLGDDIFDRTVQGVSLTSHGEIVVSYARRLLSINDQIVHLGG-GRRPELVIRIGTSSDYTLMLLPDILATFRARFPAVRFHISAGFTEPLMRQLRDGEIDLFVGLSTGEPRDAHEVWAAPLVWVRGPNIRLDPGDPVPLISSGEPSVYHRAAASALRAAGLGWEEVFVGPVMASLSGAVAAGLGVMPITRRRAIDDGMIIGDDLPLPALSHAYGGIFVREGGAREIYEQLADDIA 278          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A345ZXZ5_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZXZ5_9HYPH)

HSP 1 Score: 371 bits (952), Expect = 5.760e-126
Identity = 192/281 (68.33%), Postives = 218/281 (77.58%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLN--GAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIA 864
            MTNIPTDLLRT VAVVD+RS+TKAAA LG+TQPAVSAQIKRLQFLLG D+FDR  QGVSLT HG+ V++ ARRLLSINDQI+ L   G     EL IR+GT SD+IAS LP TLA FR RWPDVRFSVRT   DPL RQL +GEID+++A +M PPHDARH + +EVVWVR  + RFDP  PVPLVS G    Y +  V+ L+ AG+ WEDVF  PS+ SL  AVAAGLGVM I+RRRA   G+ +WED PLP L  LYSGIYVREGGARA YEQLADEIA
Sbjct:    1 MTNIPTDLLRTLVAVVDLRSYTKAAAFLGITQPAVSAQIKRLQFLLGTDLFDRRVQGVSLTAHGQSVVSQARRLLSINDQILALGVRGTESKAELLIRIGTPSDFIASYLPDTLARFRARWPDVRFSVRTQPYDPLVRQLHNGEIDVMVAQTMAPPHDARHLVEQEVVWVRSPSMRFDPSDPVPLVSGGDSSTYRRLAVQMLREAGLHWEDVFTSPSMYSLSNAVAAGLGVMPISRRRARAVGLPVWEDTPLPILPPLYSGIYVREGGARASYEQLADEIA 281          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: UPI0010BEDED4 (LysR substrate-binding domain-containing protein n=1 Tax=Pseudolabrys sp. FHR47 TaxID=2562284 RepID=UPI0010BEDED4)

HSP 1 Score: 367 bits (943), Expect = 1.300e-124
Identity = 195/306 (63.73%), Postives = 229/306 (74.84%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQSKA-PGKSMGSVDGRKKNSAA 942
            MTNIPTDLLRTFVAVVD RSFTKAA SLGVTQPAVSAQIKRLQ +LGD+IFDR+  GVSLTPHGE+V+NYARRLLSINDQIVHL G+   PEL IR+GTSSD+  ++LP  LASFR R+P VRF+V   Y +PL RQLRDGEID+ + LS   P DA       +VWVRG + R +P   VPLVSYG+P +YH+  V AL+AAG+ WE+V+ GP + SL GAVAAGLGVM I RRRA + G++I +D PLP L   Y GIYVREGG R +YEQLADEIA  +  +  A P    G  DG  KN+AA
Sbjct:    1 MTNIPTDLLRTFVAVVDNRSFTKAANSLGVTQPAVSAQIKRLQSMLGDEIFDRTVPGVSLTPHGEVVINYARRLLSINDQIVHLGGSR-RPELVIRIGTSSDFTVTLLPDILASFRARYPAVRFNVSAGYSEPLMRQLRDGEIDVFVGLSNGEPRDAHQVWPAPLVWVRGADVRLEPGETVPLVSYGEPSVYHRAAVSALRAAGLEWEEVYTGPIMASLSGAVAAGLGVMPITRRRAVDGGMIIGDDLPLPALNHAYGGIYVREGGPREIYEQLADEIAATMSRRMPATPLGVAGLFDG--KNTAA 303          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A0Q7TME8_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Pseudolabrys sp. Root1462 TaxID=1736466 RepID=A0A0Q7TME8_9HYPH)

HSP 1 Score: 338 bits (868), Expect = 2.850e-113
Identity = 176/289 (60.90%), Postives = 212/289 (73.36%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQSKAP 894
            MTNIPTDLLRT VAVVD RSFTKAA SLGVTQPAVSAQIKRLQ+LLG+DIFDRS QGVSLT HGE+V++YARRLLSINDQIV L G    P+L +R+GTSSD++A +LP  L  FR   P +RFSV +   D + RQLR GE+DL I L+   P DAR      +VWVRG   R      VPL+S+G+P ++H+  V AL+AAG+ WE+VF  P + SL GAVAAGLGVM I RRRA E G++I +D PLP L E+Y+G++VREGG R VYE LAD+I+  V    K P
Sbjct:    1 MTNIPTDLLRTLVAVVDHRSFTKAAMSLGVTQPAVSAQIKRLQYLLGEDIFDRSVQGVSLTSHGEVVVSYARRLLSINDQIVRLGGDSVRPDLVVRIGTSSDFVAMVLPDVLKRFRTASPALRFSVSSADSDSMMRQLRSGELDLFIGLTPVEPKDARDGWTAPLVWVRGPQFRLGHGERVPLISHGEPGVHHRVAVSALRAAGLDWEEVFTAPVVTSLTGAVAAGLGVMPITRRRAIEAGLIIADDLPLPPLPEVYAGVFVREGGPREVYEALADDISATVRRLIKVP 289          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A6L5FNR8_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FNR8_9HYPH)

HSP 1 Score: 312 bits (800), Expect = 1.100e-102
Identity = 163/302 (53.97%), Postives = 213/302 (70.53%), Query Frame = 1
Query:   25 KMTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPH-DARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQ-----SKAPGKSMGS 912
            +M NIPTDLLRT V VVD RSFTKAA  LGVTQPAVSAQIKRLQ +LG+D+FDRS  G++LTP GE+++NYARRLLSIND I+H+    P  + TIRVG  SD++   LPA LA FR+RWPD+RF+V+   L+P   +LR G++D+ + LS   P+ +ARH     +VW+RG+ TR DP  PVPLVS+ + CIY++  V AL  +G   E VFIGP++ SL  AV AGLG+MA+ R R     +M+W+DAPLPKL +L  G+Y+REGG     E LAD +A  +HA+      +A G+S+ S
Sbjct:    8 RMNNIPTDLLRTLVTVVDQRSFTKAAQVLGVTQPAVSAQIKRLQGVLGNDLFDRSASGLNLTPKGELIVNYARRLLSINDLILHVAEPNPSAQ-TIRVGVPSDFLGGNLPAILAGFRKRWPDLRFNVQHGALEPQLHELRQGQLDIAVGLSSADPNPEARHHWVESMVWLRGRATRLDPVAPVPLVSFREDCIYYRTAVTALNQSGRDSELVFIGPTIVSLAAAVGAGLGIMALPRSRVWSPDLMVWDDAPLPKLPDLAWGVYLREGGEHGPLENLADSMAAELHARCTMSVKQASGRSVKS 308          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A537V3A0_9PROT (LysR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537V3A0_9PROT)

HSP 1 Score: 285 bits (728), Expect = 1.050e-91
Identity = 154/297 (51.85%), Postives = 197/297 (66.33%), Query Frame = 1
Query:    1 AVPAANGAK--MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPH-DARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQ 882
            AVP A   +  M NIPT+LLRT V VVD RSFTKAA SLGVTQPAVSAQIKRLQFLLG ++ D+S  GVSLTP GE+V+ +ARR+LSINDQI  L G  P  + T+ V    D+  + +PATLA FR+RWP +RF+      +   R LR G+IDL +A+S + P  +A+H    + VWVR   T+ DP  PVPLVS+G+ C      V AL   G   + VF   S+ SL+ AV AGLG+M + R R ++  + IWEDAPLP+L +LY GIY+R+GG R   E+LAD+IA  +  Q
Sbjct:    8 AVPDAQERRGGMVNIPTELLRTLVFVVDQRSFTKAAQSLGVTQPAVSAQIKRLQFLLGYELLDKSAPGVSLTPRGEMVVTHARRMLSINDQIAQLGGGQPTAQ-TVCVAMPGDFAGTRIPATLARFRKRWPGIRFAASVTSFENTLRGLRQGDIDLAVAISSSKPSIEAQHLWIDQAVWVRSDATQLDPVGPVPLVSFGEDCSCRYTAVNALHRIGRECDFVFTSRSIASLEAAVLAGLGIMVLPRSRVQQTSLSIWEDAPLPELPQLYCGIYLRQGGNRVALEELADDIAAALRPQ 303          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A833GFE6_9HYPH (LysR family transcriptional regulator n=1 Tax=Pseudorhodoplanes sp. TaxID=1934341 RepID=A0A833GFE6_9HYPH)

HSP 1 Score: 284 bits (727), Expect = 1.810e-91
Identity = 151/288 (52.43%), Postives = 191/288 (66.32%), Query Frame = 1
Query:   13 ANGAKMTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVH 876
            A G  M NIPT+LLRT V VVD+RSFTKAA +LGVTQPAVSAQIKRL  LL  DI D+S  GV LTP GE V+++ARRLLSIND I+ L   GP P  TIRVG   D+I   LP TLA FR RWP+VRF VR+ + +   R+LR GE+DL + +S+   HD++H    E VWV      +DP+ PV LVS+G+ C  H+  V AL+  G ++E V++  S  SL  AV AGLGVM + R R +  G+  W+DAP PK  +LY G+ +REG  R   EQLAD +A  ++
Sbjct:   26 AAGPAMVNIPTELLRTLVTVVDLRSFTKAAQALGVTQPAVSAQIKRLHHLLDADILDKSAPGVLLTPIGERVVDHARRLLSINDSILGLTMPGP-PSQTIRVGVPGDFILPFLPWTLAQFRLRWPEVRFQVRSGHREMFLRELRQGELDLCVGMSVESVHDSQHEWREEAVWVHNPVYPYDPNAPVGLVSFGEHCAMHQLAVAALEEIGRAYEVVYVNSSTASLAAAVNAGLGVMILIRSRVDTAGLTAWDDAPYPKPADLYCGVSIREGDGRVALEQLADAVAAALN 312          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A1W6ZM52_9HYPH (HTH lysR-type domain-containing protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZM52_9HYPH)

HSP 1 Score: 281 bits (719), Expect = 1.040e-90
Identity = 153/293 (52.22%), Postives = 205/293 (69.97%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELT---IRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALS----MTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQS 885
            M NIPT+LLRT VAVVD RSFTKAA SLGVTQPAVSAQIKRLQ LL  ++FD+S  GVSLTP G +V+N+ARR+LSINDQIV ++    +P+L+   +R+G S D+ A +LP  LA F++R+P +RFSVR ++ D ++R LR G++DLLI LS    MT   DARH  A  +VWVR  + + D D PVPLV++G+ C YH+  +RAL  A   +E VF+G S  S+  AV++GLGV  +  R A+  G   WEDAPLP + ++Y GI + E G R V E+LAD +  +++A +
Sbjct:    1 MINIPTELLRTLVAVVDFRSFTKAAQSLGVTQPAVSAQIKRLQILLESELFDKSAPGVSLTPSGRLVVNFARRMLSINDQIVEIS----VPKLSAQSVRIGVSGDFAAPLLPPLLAEFKQRYPALRFSVRGEHFDIMSRDLRQGDLDLLIGLSEGDVMT---DARHQWAEPMVWVRNPSLQLDHDSPVPLVTFGEICAYHRLALRALNRAERPYEIVFVGASEASIFAAVSSGLGVSVMPSRLAKRAGFESWEDAPLPPVNDVYFGICLGENGERIVLEELADAVRDLLYADA 286          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A6N7GTL5_9HYPH (LysR family transcriptional regulator n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GTL5_9HYPH)

HSP 1 Score: 273 bits (698), Expect = 2.090e-87
Identity = 150/297 (50.51%), Postives = 195/297 (65.66%), Query Frame = 1
Query:   25 KMTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHL-NGAGPMPELTIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPP-HDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQSKAPGKSMG 909
            +M NIPTDLLRT +AV+D+RSFTKAA  LGVTQPAVSAQIKRLQ L+G ++ D+S  GVSLT  G  V+  ARR+L+IND+I+ L NG   M   T+RVG   DY  S +PATLA FR RWPDV F+V +   D + R L+ G++D+++A++ TPP    RH   R+ VWVR   TR +PD PVPLVSYG+ C   +  V AL  AG   + VF   S+ SL  AV AG GV+ + R RA ++ + IWEDAPLP L +L+ GIYVR+   R   ++LAD     + A+ + P    G
Sbjct:    2 QMQNIPTDLLRTLIAVIDLRSFTKAAQMLGVTQPAVSAQIKRLQSLIGYELLDKSAPGVSLTQRGLTVVAQARRMLAINDEILQLSNGQSAMQ--TLRVGIPGDYSGSRIPATLARFRLRWPDVGFTVTSGTSDSMLRALKQGDLDVVMAVTDTPPVTKPRHLWMRQAVWVRSDATRINPDGPVPLVSYGEDCACQRVAVAALSQAGRRCDYVFTSVSVTSLAAAVGAGFGVLVMPRGRALKNNLYIWEDAPLPPLPQLFCGIYVRDADTRTAADELADYFDADLRAEPQPPNWETG 296          
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Match: A0A127F255_9HYPH (LysR family transcriptional regulator n=1 Tax=Rhodoplanes sp. Z2-YC6860 TaxID=674703 RepID=A0A127F255_9HYPH)

HSP 1 Score: 254 bits (649), Expect = 4.080e-80
Identity = 144/285 (50.53%), Postives = 186/285 (65.26%), Query Frame = 1
Query:   28 MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDIFDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPEL-TIRVGTSSDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALSMTPPH-DARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRALKAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPLPKLGELYSGIYVREGGARAVYEQLADEIAVVVH 876
            MTNIPTDLLRT +AVVD+RSFTKAA SLGVTQPAVSAQIKRLQ +LG D+ D+S  GVSLT  GE+V+NYARRLLSINDQI+ +  A P  E  TIRVG + D  A+ + A + + R   PD++F +     D L R LR+GE DL I  S T P  D R+     +VWVR  +   + +RPVPL SYG+  ++ +  + AL  A   +E VF   SL +L   VAAG  VMA+ R RA   G+ +WEDAPLPKL +++ G+YVR+G      E +A+ I   ++
Sbjct:    1 MTNIPTDLLRTLIAVVDLRSFTKAAQSLGVTQPAVSAQIKRLQGMLGADLLDKSAPGVSLTSSGELVVNYARRLLSINDQILDI--ASPKIETKTIRVGATGDITAAAVAAGIGAVRASQPDLQFHLYVAGADDLLRDLREGETDLAIWASSTGPSLDTRYFWTEPMVWVRAPSMEIESNRPVPLASYGEDHLFGRIGINALSQANRGYERVFTSLSLVALGNVVAAGAAVMALPRSRASLPGLEVWEDAPLPKLPDVFLGLYVRDGADMQEREAIAEAIVAALN 283          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17375.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A371B8F8_9HYPH2.770e-12668.10LysR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A345ZXZ5_9HYPH5.760e-12668.33LysR family transcriptional regulator n=1 Tax=Pseu... [more]
UPI0010BEDED41.300e-12463.73LysR substrate-binding domain-containing protein n... [more]
A0A0Q7TME8_9HYPH2.850e-11360.90HTH lysR-type domain-containing protein n=1 Tax=Ps... [more]
A0A6L5FNR8_9HYPH1.100e-10253.97LysR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A537V3A0_9PROT1.050e-9151.85LysR family transcriptional regulator n=1 Tax=Alph... [more]
A0A833GFE6_9HYPH1.810e-9152.43LysR family transcriptional regulator n=1 Tax=Pseu... [more]
A0A1W6ZM52_9HYPH1.040e-9052.22HTH lysR-type domain-containing protein n=1 Tax=Ps... [more]
A0A6N7GTL5_9HYPH2.090e-8750.51LysR family transcriptional regulator n=1 Tax=Hyph... [more]
A0A127F255_9HYPH4.080e-8050.53LysR family transcriptional regulator n=1 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17375contigP-wetherbeei_contig17375:171..1115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1187851.A33M_4219
PFAMsHTH_1,LysR_substrate
Model size945
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.48e-73
EggNOG OGsCOG0583@1|root,COG0583@2|Bacteria,1R9H4@1224|Proteobacteria,2U420@28211|Alphaproteobacteria
DescriptionLysR substrate binding domain
Cds size918
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.644977-CDS-P-wetherbeei_contig17375:170..10881683186115.644977-CDS-P-wetherbeei_contig17375:170..1088Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17375 171..1088 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.6531746-UTR-P-wetherbeei_contig17375:1088..11151683186115.6531746-UTR-P-wetherbeei_contig17375:1088..1115Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig17375 1089..1115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17375.1.1prot_P-wetherbeei_contig17375.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17375 171..1088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17375.1.1

>prot_P-wetherbeei_contig17375.1.1 ID=prot_P-wetherbeei_contig17375.1.1|Name=mRNA_P-wetherbeei_contig17375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=306bp
MTNIPTDLLRTFVAVVDMRSFTKAAASLGVTQPAVSAQIKRLQFLLGDDI
FDRSTQGVSLTPHGEIVLNYARRLLSINDQIVHLNGAGPMPELTIRVGTS
SDYIASILPATLASFRERWPDVRFSVRTDYLDPLARQLRDGEIDLLIALS
MTPPHDARHCIAREVVWVRGKNTRFDPDRPVPLVSYGQPCIYHKHVVRAL
KAAGMSWEDVFIGPSLNSLKGAVAAGLGVMAINRRRAEEDGIMIWEDAPL
PKLGELYSGIYVREGGARAVYEQLADEIAVVVHAQSKAPGKSMGSVDGRK
KNSAA*
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mRNA from alignment at P-wetherbeei_contig17375:171..1115-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17375.1.1 ID=mRNA_P-wetherbeei_contig17375.1.1|Name=mRNA_P-wetherbeei_contig17375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=945bp|location=Sequence derived from alignment at P-wetherbeei_contig17375:171..1115- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGCCGGCGGCGAACGGGGCAAAGATGACGAATATTCCGACCGATCT GCTGCGGACCTTCGTTGCCGTGGTCGATATGCGCAGCTTCACCAAGGCCG CCGCCTCGCTCGGGGTTACCCAGCCGGCGGTCAGCGCGCAGATCAAGCGC CTGCAATTCCTGCTCGGCGACGATATCTTCGACCGCAGCACCCAGGGCGT CAGCCTCACGCCGCACGGCGAGATCGTGCTCAATTACGCGCGCCGATTGC TGTCGATCAACGATCAGATCGTTCATCTCAACGGCGCCGGCCCGATGCCC GAACTGACCATTCGCGTTGGCACCTCCAGCGACTATATCGCTTCGATCCT GCCGGCGACTTTGGCGTCTTTCCGCGAGCGCTGGCCGGATGTGCGTTTTT CCGTCCGCACGGATTATCTCGATCCGCTGGCCCGCCAGTTGCGCGACGGT GAAATCGATCTGCTGATCGCGCTGTCGATGACGCCGCCTCACGATGCGCG TCACTGCATCGCGCGCGAGGTCGTCTGGGTGCGAGGCAAGAACACGCGCT TCGATCCCGACCGCCCGGTGCCGCTGGTCTCCTACGGGCAGCCCTGCATC TATCACAAGCATGTCGTGCGCGCCCTGAAGGCCGCCGGTATGAGTTGGGA AGACGTGTTCATCGGCCCGAGCCTGAATAGCCTGAAAGGCGCGGTGGCGG CCGGCCTCGGCGTCATGGCGATCAACCGGCGCCGCGCCGAGGAGGATGGC ATTATGATTTGGGAAGACGCGCCGTTGCCGAAATTGGGCGAGCTTTACAG CGGCATCTATGTTCGCGAGGGCGGCGCCCGCGCCGTCTACGAACAACTGG CCGATGAAATTGCCGTGGTTGTTCACGCGCAGTCGAAGGCGCCCGGCAAG TCAATGGGCAGCGTCGACGGCCGCAAGAAGAATTCGGCGGCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17375:171..1115-

>mRNA_P-wetherbeei_contig17375.1.1 ID=mRNA_P-wetherbeei_contig17375.1.1|Name=mRNA_P-wetherbeei_contig17375.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=918bp|location=Sequence derived from alignment at P-wetherbeei_contig17375:171..1115- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGAATATTCCGACCGATCTGCTGCGGACCTTCGTTGCCGTGGTCGA
TATGCGCAGCTTCACCAAGGCCGCCGCCTCGCTCGGGGTTACCCAGCCGG
CGGTCAGCGCGCAGATCAAGCGCCTGCAATTCCTGCTCGGCGACGATATC
TTCGACCGCAGCACCCAGGGCGTCAGCCTCACGCCGCACGGCGAGATCGT
GCTCAATTACGCGCGCCGATTGCTGTCGATCAACGATCAGATCGTTCATC
TCAACGGCGCCGGCCCGATGCCCGAACTGACCATTCGCGTTGGCACCTCC
AGCGACTATATCGCTTCGATCCTGCCGGCGACTTTGGCGTCTTTCCGCGA
GCGCTGGCCGGATGTGCGTTTTTCCGTCCGCACGGATTATCTCGATCCGC
TGGCCCGCCAGTTGCGCGACGGTGAAATCGATCTGCTGATCGCGCTGTCG
ATGACGCCGCCTCACGATGCGCGTCACTGCATCGCGCGCGAGGTCGTCTG
GGTGCGAGGCAAGAACACGCGCTTCGATCCCGACCGCCCGGTGCCGCTGG
TCTCCTACGGGCAGCCCTGCATCTATCACAAGCATGTCGTGCGCGCCCTG
AAGGCCGCCGGTATGAGTTGGGAAGACGTGTTCATCGGCCCGAGCCTGAA
TAGCCTGAAAGGCGCGGTGGCGGCCGGCCTCGGCGTCATGGCGATCAACC
GGCGCCGCGCCGAGGAGGATGGCATTATGATTTGGGAAGACGCGCCGTTG
CCGAAATTGGGCGAGCTTTACAGCGGCATCTATGTTCGCGAGGGCGGCGC
CCGCGCCGTCTACGAACAACTGGCCGATGAAATTGCCGTGGTTGTTCACG
CGCAGTCGAAGGCGCCCGGCAAGTCAATGGGCAGCGTCGACGGCCGCAAG
AAGAATTCGGCGGCTTAG
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