mRNA_P-wetherbeei_contig1736.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1736.1.1
Unique NamemRNA_P-wetherbeei_contig1736.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1736.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1736contigP-wetherbeei_contig1736:1..2505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2167
Hectar predicted targeting categoryother localisation
Exons3
Cds size2025
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.3038714-CDS-P-wetherbeei_contig1736:0..8671683186115.3038714-CDS-P-wetherbeei_contig1736:0..867Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1736 1..867 +
1683186115.3115385-CDS-P-wetherbeei_contig1736:1172..17391683186115.3115385-CDS-P-wetherbeei_contig1736:1172..1739Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1736 1173..1739 +
1683186115.3192205-CDS-P-wetherbeei_contig1736:1772..23631683186115.3192205-CDS-P-wetherbeei_contig1736:1772..2363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1736 1773..2363 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186115.3265812-UTR-P-wetherbeei_contig1736:2363..25051683186115.3265812-UTR-P-wetherbeei_contig1736:2363..2505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1736 2364..2505 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1736.1.1prot_P-wetherbeei_contig1736.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1736 1..2363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1736.1.1

>prot_P-wetherbeei_contig1736.1.1 ID=prot_P-wetherbeei_contig1736.1.1|Name=mRNA_P-wetherbeei_contig1736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=675bp
RHRRDPLFLYKSAPVCEDCYLVYAELASLALNATSRRAMAATAASLHRFD
RPRSSGGGFSGGGGSAWGGGGEGDVAARVRSSRVRTDESVWRPVRGGNAL
SAGNGGGGSSCFAGMAVPGSSGSTYGKEMHSSQSMPALQPRAVPAFPETV
RNGPGAYAAARAAMEAGIGNGNGGGLGGCCGGGGYNNGGGYRDGGGGSDP
ADGGWVEGNLAEEPPAPAPYAGSGIGSAQPSVEEMVRAREEAFFREVAAA
GRRKDGGRSHPLAHMVASASKLSALSLLPHELDPNKAMKRVLRRNGTSPY
ARPLVLVEYLGHGGGLHASAAGAGGAAGSKANRGGGGAGVPAQLSASAMR
HREFLRVAMDEVKGQLGEAMSRENEGGNSDDGNKRAEDDGGSSSGVGGGS
CNGVDGGSCNGVDGSDGAGGGRSAGYAGSSNDQGDRLSATTSALSRNDGS
TGADIAGVPEDDDGSEGRRIEADDDCDAVGCGGNASGDEVEAGANSEGGD
GRGQGSPGSDVGKSGMAGGGDDHLSFYDGQAVKSLEPLSPAGDERAQASA
ETGGTNGSEGSVADGPGGGRPGGGGGSSSSPNSHGGGDSTCSNGVDLAGI
VVSADENGGSRGEADRAAPSVSASEPGVESDDARHQAGSPPAEHNHPQKP
EATLPDGGLRLGEAQKGIGEGAAG*
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mRNA from alignment at P-wetherbeei_contig1736:1..2505+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1736.1.1 ID=mRNA_P-wetherbeei_contig1736.1.1|Name=mRNA_P-wetherbeei_contig1736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2505bp|location=Sequence derived from alignment at P-wetherbeei_contig1736:1..2505+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCACCGGCGGGACCCGCTCTTCCTCTACAAGAGCGCGCCGGTGTGCGA
GGACTGCTACCTCGTCTACGCCGAGCTGGCATCACTGGCGCTCAACGCCA
CATCCCGCCGGGCCATGGCGGCCACCGCCGCGTCGCTGCACCGGTTCGAC
CGGCCCCGCAGCAGCGGCGGCGGCTTTAGCGGCGGCGGAGGCAGCGCATG
GGGAGGCGGTGGGGAAGGCGACGTCGCTGCGAGGGTCAGATCGAGCCGCG
TGCGCACAGACGAGAGCGTTTGGCGGCCGGTGCGAGGCGGCAACGCGCTC
TCCGCCGGCAACGGCGGCGGCGGCAGCAGCTGCTTCGCCGGGATGGCGGT
TCCCGGCTCGTCGGGTTCCACTTACGGAAAGGAGATGCATAGCAGCCAGA
GTATGCCGGCGCTGCAGCCGCGTGCAGTGCCCGCTTTCCCCGAGACGGTT
CGGAACGGTCCGGGCGCATACGCGGCCGCTCGCGCTGCCATGGAAGCCGG
CATAGGCAATGGCAACGGCGGCGGTCTTGGCGGCTGCTGCGGCGGAGGCG
GGTACAACAACGGCGGCGGTTACAGGGACGGTGGCGGCGGCAGCGACCCG
GCTGACGGCGGATGGGTGGAAGGAAATTTAGCGGAGGAGCCTCCGGCGCC
GGCGCCGTACGCCGGCAGCGGAATCGGCAGCGCACAGCCCTCCGTCGAGG
AGATGGTGCGGGCCCGCGAGGAGGCGTTCTTCCGGGAGGTGGCGGCGGCC
GGACGGCGGAAGGACGGCGGCCGCAGCCACCCGTTGGCGCATATGGTGGC
GTCGGCCTCCAAGCTGTCGGCGCTGTCGCTGCTGCCGCACGAGCTCGACC
CCAACAAGGCCATGAAGGTGGGAACCGCCGCTGCAGATGGAGAAGAGGGA
CGGCCAGAAACCGGTCAAAGTTTTGGCCGTCTTTTGGAGGGCAGGGAGGA
GAGGCTGCCATATTTTTGTGTCTCAGTTAAAGAATCGACTGAAAAGAACT
GCTCTAGCTTATTTCTCACAGAGGCGTCAGCTTCGCACCCGCTGGTGGCA
AAACAGCTCGACCGTCACGCCCATCGTCAACAAGAATTCTTCTTACAAAC
CTCTCCTTCCCGTCCTCCCTAAGGAAATCCTTTCTTTCATCCCTCCTTTG
ATATTCCTTACACTCCTGGCAGCGGGTATTGCGGCGCAATGGCACGAGCC
CATACGCGCGGCCCCTCGTCCTCGTCGAGTACCTTGGCCACGGCGGCGGC
CTTCATGCCTCTGCCGCCGGCGCCGGCGGCGCCGCTGGGTCAAAGGCCAA
CCGCGGTGGCGGCGGCGCCGGCGTCCCAGCCCAACTGTCGGCTTCAGCGA
TGCGGCACCGCGAGTTCTTGCGCGTGGCAATGGATGAAGTCAAAGGCCAG
CTCGGAGAGGCCATGTCGAGAGAAAATGAAGGCGGCAACAGCGATGACGG
CAACAAAAGAGCTGAAGATGATGGTGGCAGCAGCAGCGGCGTCGGCGGCG
GCAGTTGCAATGGCGTCGACGGCGGCAGTTGCAATGGCGTCGACGGCAGC
GACGGCGCCGGCGGCGGCAGGAGCGCTGGCTACGCTGGCAGCAGCAACGA
TCAAGGGGATCGATTATCTGCTACAACCAGTGCTCTGAGCCGCAATGACG
GCAGCACGGGAGCTGACATCGCGGGCGTCCCTGAGGACGACGACGGCAGC
GAAGGCCGTCGGATAGAAGCCGACGACGACTGCGATGCTGCCGCTGCTGC
TGCTGCTGCTGGCGGTGGCGAGGTCGGCTGCGGCGGCAATGCCAGCGGTG
ACGAGGTAGAAGCTGGGGCAAACAGCGAGGGCGGCGATGGACGTGGCCAG
GGTTCTCCTGGCAGCGATGTGGGGAAGTCCGGCATGGCCGGTGGAGGCGA
CGATCATCTCAGCTTTTATGACGGCCAAGCCGTAAAGAGTCTCGAACCAC
TTTCGCCAGCAGGGGACGAAAGAGCGCAGGCCAGCGCGGAGACCGGCGGT
ACCAACGGCAGCGAAGGCTCTGTTGCTGATGGGCCCGGTGGCGGCCGTCC
GGGAGGCGGCGGCGGCAGTAGCAGCAGTCCCAACAGCCACGGCGGCGGCG
ACAGTACCTGTAGCAACGGCGTGGACCTTGCCGGCATTGTCGTCAGCGCC
GACGAGAACGGAGGCAGCAGGGGCGAAGCTGACCGAGCCGCGCCGTCTGT
TTCCGCGAGCGAGCCTGGTGTCGAGAGCGACGATGCCAGGCACCAAGCTG
GCTCGCCGCCGGCCGAACATAACCACCCGCAAAAGCCAGAGGCGACGCTG
CCCGATGGCGGCTTGCGGCTTGGGGAGGCGCAGAAGGGGATTGGAGAAGG
TGCCGCAGGGTGAACGAAACGAAGGTTTGTAGCTGTCTCGGATATAGTGG
ACTTGTTCTGGACCTCCACTGGCCCCAGACTCTTTCAGGACGAGGCCTGA
GAAAGATACTTTTGCAAGCGATGGCGAAACGACGAGAGGAAGGTACTACA
CGTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1736:1..2505+

>mRNA_P-wetherbeei_contig1736.1.1 ID=mRNA_P-wetherbeei_contig1736.1.1|Name=mRNA_P-wetherbeei_contig1736.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2025bp|location=Sequence derived from alignment at P-wetherbeei_contig1736:1..2505+ (Phaeothamnion wetherbeei SAG_119_79)
CGGCACCGGCGGGACCCGCTCTTCCTCTACAAGAGCGCGCCGGTGTGCGA
GGACTGCTACCTCGTCTACGCCGAGCTGGCATCACTGGCGCTCAACGCCA
CATCCCGCCGGGCCATGGCGGCCACCGCCGCGTCGCTGCACCGGTTCGAC
CGGCCCCGCAGCAGCGGCGGCGGCTTTAGCGGCGGCGGAGGCAGCGCATG
GGGAGGCGGTGGGGAAGGCGACGTCGCTGCGAGGGTCAGATCGAGCCGCG
TGCGCACAGACGAGAGCGTTTGGCGGCCGGTGCGAGGCGGCAACGCGCTC
TCCGCCGGCAACGGCGGCGGCGGCAGCAGCTGCTTCGCCGGGATGGCGGT
TCCCGGCTCGTCGGGTTCCACTTACGGAAAGGAGATGCATAGCAGCCAGA
GTATGCCGGCGCTGCAGCCGCGTGCAGTGCCCGCTTTCCCCGAGACGGTT
CGGAACGGTCCGGGCGCATACGCGGCCGCTCGCGCTGCCATGGAAGCCGG
CATAGGCAATGGCAACGGCGGCGGTCTTGGCGGCTGCTGCGGCGGAGGCG
GGTACAACAACGGCGGCGGTTACAGGGACGGTGGCGGCGGCAGCGACCCG
GCTGACGGCGGATGGGTGGAAGGAAATTTAGCGGAGGAGCCTCCGGCGCC
GGCGCCGTACGCCGGCAGCGGAATCGGCAGCGCACAGCCCTCCGTCGAGG
AGATGGTGCGGGCCCGCGAGGAGGCGTTCTTCCGGGAGGTGGCGGCGGCC
GGACGGCGGAAGGACGGCGGCCGCAGCCACCCGTTGGCGCATATGGTGGC
GTCGGCCTCCAAGCTGTCGGCGCTGTCGCTGCTGCCGCACGAGCTCGACC
CCAACAAGGCCATGAAGCGGGTATTGCGGCGCAATGGCACGAGCCCATAC
GCGCGGCCCCTCGTCCTCGTCGAGTACCTTGGCCACGGCGGCGGCCTTCA
TGCCTCTGCCGCCGGCGCCGGCGGCGCCGCTGGGTCAAAGGCCAACCGCG
GTGGCGGCGGCGCCGGCGTCCCAGCCCAACTGTCGGCTTCAGCGATGCGG
CACCGCGAGTTCTTGCGCGTGGCAATGGATGAAGTCAAAGGCCAGCTCGG
AGAGGCCATGTCGAGAGAAAATGAAGGCGGCAACAGCGATGACGGCAACA
AAAGAGCTGAAGATGATGGTGGCAGCAGCAGCGGCGTCGGCGGCGGCAGT
TGCAATGGCGTCGACGGCGGCAGTTGCAATGGCGTCGACGGCAGCGACGG
CGCCGGCGGCGGCAGGAGCGCTGGCTACGCTGGCAGCAGCAACGATCAAG
GGGATCGATTATCTGCTACAACCAGTGCTCTGAGCCGCAATGACGGCAGC
ACGGGAGCTGACATCGCGGGCGTCCCTGAGGACGACGACGGCAGCGAAGG
CCGTCGGATAGAAGCCGACGACGACTGCGATGCTGTCGGCTGCGGCGGCA
ATGCCAGCGGTGACGAGGTAGAAGCTGGGGCAAACAGCGAGGGCGGCGAT
GGACGTGGCCAGGGTTCTCCTGGCAGCGATGTGGGGAAGTCCGGCATGGC
CGGTGGAGGCGACGATCATCTCAGCTTTTATGACGGCCAAGCCGTAAAGA
GTCTCGAACCACTTTCGCCAGCAGGGGACGAAAGAGCGCAGGCCAGCGCG
GAGACCGGCGGTACCAACGGCAGCGAAGGCTCTGTTGCTGATGGGCCCGG
TGGCGGCCGTCCGGGAGGCGGCGGCGGCAGTAGCAGCAGTCCCAACAGCC
ACGGCGGCGGCGACAGTACCTGTAGCAACGGCGTGGACCTTGCCGGCATT
GTCGTCAGCGCCGACGAGAACGGAGGCAGCAGGGGCGAAGCTGACCGAGC
CGCGCCGTCTGTTTCCGCGAGCGAGCCTGGTGTCGAGAGCGACGATGCCA
GGCACCAAGCTGGCTCGCCGCCGGCCGAACATAACCACCCGCAAAAGCCA
GAGGCGACGCTGCCCGATGGCGGCTTGCGGCTTGGGGAGGCGCAGAAGGG
GATTGGAGAAGGTGCCGCAGGGTGA
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