mRNA_P-wetherbeei_contig17341.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17341.1.1
Unique NamemRNA_P-wetherbeei_contig17341.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Match: A0A7S2UH07_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH07_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.660e-9
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    1 RCFFLACD-RVAAARRIDARCVTMLRRGLLRETAELLASGALRPHSMPSRAIGYRQTIEF 177
            RCFFL  D R+A A  +D RC  ML++GLL+ET +L  SG L P    SRAIGYRQT+++
Sbjct:   45 RCFFLCPDDRMAHAEVVDVRCEQMLQKGLLKETTDLWLSGVLLPDGQLSRAIGYRQTLDY 104
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BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Match: A0A388KS05_CHABU (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KS05_CHABU)

HSP 1 Score: 58.5 bits (140), Expect = 2.720e-7
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 CFFLACDRVAAARRIDARCVTMLRRGLLRETAELLASGALRPHSMPSRAIGYRQTIEF 177
            C+FL   R A  RRIDARC  M+  GLL+E + LL  G +   S PSRAIGYRQ +E+
Sbjct:  415 CYFLFAPRTAMYRRIDARCEEMVMDGLLKEASWLLDLGVMPDSSPPSRAIGYRQAMEY 472
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BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Match: A0A1Y1HNI6_KLENI (Isopentenyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HNI6_KLENI)

HSP 1 Score: 55.8 bits (133), Expect = 2.210e-6
Identity = 29/59 (49.15%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 RCFFLACDRVAAARRIDARCVTMLRRGLLRETAELLASGALRPHSMPSRAIGYRQTIEF 177
            RC+FL   R    R+ID RC  M++ GLL E ++LL +G      MPSRAIGYRQ +E+
Sbjct:  384 RCYFLFGPRRELYRKIDERCEQMVKGGLLEEASQLLDTGIRADTCMPSRAIGYRQALEY 442
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BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Match: A0A7S0GWQ9_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GWQ9_MICPS)

HSP 1 Score: 55.1 bits (131), Expect = 2.960e-6
Identity = 48/137 (35.04%), Postives = 59/137 (43.07%), Query Frame = 1 
Query:    4 CFFLACDRVAAARRIDARCVTMLRRGLLRETAELLASGALRPHSMP-SRAIGYRQTIEFFGLLVGNSDSADGGAIAXXXXXXXXXXXXXXXXXDAVVDPDIATLLPEFALTFAARTRQYAHAQFKWFRGEKGRNFVW 411
            C  L+  R    RRIDAR   M+R G+L E+A +L +G L P S P SRAIGYRQT++F               +A                 D          L     T  A TR +A  QF WFRGEK   + W
Sbjct:   36 CVALSSPRATLYRRIDARVEEMVRDGVLHESASMLLAG-LEPGSTPASRAIGYRQTMDF---------------LARRAERRRDETKTDGDKTDDAFFCSHEKFLAYVEETQRA-TRAFAKRQFTWFRGEKEGRYFW 155
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BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Match: A0A2R6X662_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X662_MARPO)

HSP 1 Score: 54.7 bits (130), Expect = 5.280e-6
Identity = 45/132 (34.09%), Postives = 58/132 (43.94%), Query Frame = 1 
Query:    1 RCFFLACDRVAAARRIDARCVTMLRR--GLLRETAELLASGALRPHSMPSRAIGYRQTIEFFGLLVGNSDSADGGAIAXXXXXXXXXXXXXXXXXDAVVDPDIATLLPEFALTFAARTRQYAHAQFKWFRGE 390
            +C+F+   R+   RRID RC  ML    GLLRE + LL  G L   S PSRAIGYRQT+E+            GG  +                        ++  L ++   F   +R YA  Q  WFRGE
Sbjct:  241 QCYFMYTQRMDLYRRIDQRCEEMLTDTDGLLREASWLLDLGILPNSSSPSRAIGYRQTMEYL-----TKCRMSGGVTS------------------------VSQFL-DYLQGFQRASRNYAKRQLTWFRGE 342
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17341.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2UH07_9STRA5.660e-955.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A388KS05_CHABU2.720e-753.45CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A1Y1HNI6_KLENI2.210e-649.15Isopentenyltransferase n=1 Tax=Klebsormidium niten... [more]
A0A7S0GWQ9_MICPS2.960e-635.04Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A2R6X662_MARPO5.280e-634.09Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17341contigP-wetherbeei_contig17341:755..1312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ18
PFAMsIPPT
Model size411
Max annot lvl2759|Eukaryota
KEGG rclassRC02820
KEGG koko:K00791
KEGG ReactionR01122
KEGG Pathwayko00908,ko01100,ko01110,map00908,map01100,map01110
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016765,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0052381,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Exons2
Evalue4.71e-21
EggNOG OGsCOG0324@1|root,KOG1384@2759|Eukaryota
EC2.5.1.75
DescriptionCatalyzes the transfer of a dimethylallyl group onto the adenine at position 37
Cds size411
COG categoryJ
BRITEko00000,ko00001,ko01000,ko01006,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.8033183-CDS-P-wetherbeei_contig17341:754..8851683186114.8033183-CDS-P-wetherbeei_contig17341:754..885Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17341 755..885 -
1683186114.8121648-CDS-P-wetherbeei_contig17341:1032..13121683186114.8121648-CDS-P-wetherbeei_contig17341:1032..1312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17341 1033..1312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17341.1.1prot_P-wetherbeei_contig17341.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17341 755..1312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17341.1.1

>prot_P-wetherbeei_contig17341.1.1 ID=prot_P-wetherbeei_contig17341.1.1|Name=mRNA_P-wetherbeei_contig17341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
RCFFLACDRVAAARRIDARCVTMLRRGLLRETAELLASGALRPHSMPSRA
IGYRQTIEFFGLLVGNSDSADGGAIAEESGGGGGKSSSSGGGGDAVVDPD
IATLLPEFALTFAARTRQYAHAQFKWFRGEKGRNFVW
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mRNA from alignment at P-wetherbeei_contig17341:755..1312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17341.1.1 ID=mRNA_P-wetherbeei_contig17341.1.1|Name=mRNA_P-wetherbeei_contig17341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=558bp|location=Sequence derived from alignment at P-wetherbeei_contig17341:755..1312- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGTTTCTTTCTCGCATGTGACCGTGTGGCCGCCGCCCGCCGCATCGA
CGCCCGCTGCGTGACCATGCTGCGGCGGGGACTGCTCCGCGAGACGGCGG
AACTGCTGGCGTCGGGAGCCTTGCGGCCCCACTCCATGCCCAGCCGCGCT
ATTGGCTACCGGCAGACGATCGAGTTCTTCGGCTTGCTTGTCGGAAATTC
TGACTCCGCTGACGGCGGCGCAATTGCGGAGGAAAGCGGCGGCGGCGGCG
GCAAAAGCAGCAGCTCCGGCGGCGGCGGCGGTGGCGGCGGCTTCGGGTTT
CGCCACTCTCCGGTTCCGCAGCCCGTGCTGACGTCGGCGGCGCCATCGGG
AGCAAGACAGGCGGCAAATGCGGCAGCGGACACGGTGGCCGCGGCGTTAT
CGGCTGCCAGCACTTCGGGAAAGGCAGATGCGGTCGTGGACCCGGACATC
GCTACGCTGCTGCCGGAGTTTGCCCTGACATTCGCTGCACGAACCCGGCA
ATATGCCCACGCACAATTCAAGTGGTTCCGCGGCGAGAAAGGACGCAACT
TCGTGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17341:755..1312-

>mRNA_P-wetherbeei_contig17341.1.1 ID=mRNA_P-wetherbeei_contig17341.1.1|Name=mRNA_P-wetherbeei_contig17341.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig17341:755..1312- (Phaeothamnion wetherbeei SAG_119_79)
AGGTGTTTCTTTCTCGCATGTGACCGTGTGGCCGCCGCCCGCCGCATCGA
CGCCCGCTGCGTGACCATGCTGCGGCGGGGACTGCTCCGCGAGACGGCGG
AACTGCTGGCGTCGGGAGCCTTGCGGCCCCACTCCATGCCCAGCCGCGCT
ATTGGCTACCGGCAGACGATCGAGTTCTTCGGCTTGCTTGTCGGAAATTC
TGACTCCGCTGACGGCGGCGCAATTGCGGAGGAAAGCGGCGGCGGCGGCG
GCAAAAGCAGCAGCTCCGGCGGCGGCGGCGATGCGGTCGTGGACCCGGAC
ATCGCTACGCTGCTGCCGGAGTTTGCCCTGACATTCGCTGCACGAACCCG
GCAATATGCCCACGCACAATTCAAGTGGTTCCGCGGCGAGAAAGGACGCA
ACTTCGTGTGG
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