mRNA_P-wetherbeei_contig17339.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17339.2.1
Unique NamemRNA_P-wetherbeei_contig17339.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17339.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17339contigP-wetherbeei_contig17339:1266..1418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FJ73
PFAMsFG-GAP,VCBS
Model size153
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0007275,GO:0008150,GO:0009555,GO:0009653,GO:0009987,GO:0010208,GO:0010584,GO:0010927,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0032501,GO:0032502,GO:0032989,GO:0043062,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045229,GO:0046872,GO:0048229,GO:0048646,GO:0048856,GO:0048869,GO:0071840,GO:0085029
Exons1
Evalue7.59e-05
EggNOG OGs2CMU7@1|root,2QRZ6@2759|Eukaryota
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186114.6679273-CDS-P-wetherbeei_contig17339:1265..14181683186114.6679273-CDS-P-wetherbeei_contig17339:1265..1418Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17339 1266..1418 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17339.2.1prot_P-wetherbeei_contig17339.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17339 1266..1418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17339.2.1

>prot_P-wetherbeei_contig17339.2.1 ID=prot_P-wetherbeei_contig17339.2.1|Name=mRNA_P-wetherbeei_contig17339.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MTPLRTAPAGRLQKQAASGGAAAGLHVVVPSLDGHVYIVEGGSGCTNKAS
V
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mRNA from alignment at P-wetherbeei_contig17339:1266..1418+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17339.2.1 ID=mRNA_P-wetherbeei_contig17339.2.1|Name=mRNA_P-wetherbeei_contig17339.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig17339:1266..1418+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCTCTGCGAACTGCACCTGCCGGCAGGTTGCAAAAGCAAGCCGC
CTCGGGCGGCGCGGCGGCCGGACTCCACGTGGTGGTGCCGAGCCTCGACG
GGCATGTTTACATCGTCGAAGGCGGAAGCGGCTGCACCAACAAGGCAAGT
GTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17339:1266..1418+

>mRNA_P-wetherbeei_contig17339.2.1 ID=mRNA_P-wetherbeei_contig17339.2.1|Name=mRNA_P-wetherbeei_contig17339.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig17339:1266..1418+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACACCTCTGCGAACTGCACCTGCCGGCAGGTTGCAAAAGCAAGCCGC
CTCGGGCGGCGCGGCGGCCGGACTCCACGTGGTGGTGCCGAGCCTCGACG
GGCATGTTTACATCGTCGAAGGCGGAAGCGGCTGCACCAACAAGGCAAGT
GTG
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