mRNA_P-wetherbeei_contig17292.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig17292.1.1
Unique NamemRNA_P-wetherbeei_contig17292.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig17292.1.1 vs. uniprot
Match: D8LTK9_ECTSI (Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTK9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.570e-7
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 PWRFAIAEAGFFRYTAFSTNDSEAWHNYAASMPLS 105
            P RFA+AEAGFFR+ A++TND+E+WHNYAA   L+
Sbjct:  740 PKRFALAEAGFFRFAAYNTNDAESWHNYAACRQLA 774
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig17292.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LTK9_ECTSI2.570e-765.71Ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig17292contigP-wetherbeei_contig17292:22..690 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTK9
PFAMsAnk_2,Ank_4,COR,Ras,Roc
Model size295
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.21e-08
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size294
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186112.871208-CDS-P-wetherbeei_contig17292:22..2251683186112.871208-CDS-P-wetherbeei_contig17292:22..225Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17292 23..225 -
1683186112.8811862-CDS-P-wetherbeei_contig17292:599..6901683186112.8811862-CDS-P-wetherbeei_contig17292:599..690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig17292 600..690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig17292.1.1prot_P-wetherbeei_contig17292.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig17292 23..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig17292.1.1

>prot_P-wetherbeei_contig17292.1.1 ID=prot_P-wetherbeei_contig17292.1.1|Name=mRNA_P-wetherbeei_contig17292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=98bp
PWRFAIAEAGFFRYTAFSTNDSEAWHNYAASMPLSRLQRLRRRPRRLHPR
SRDRSPQWACPRQPGSAPSEFPREIRGGVCRGDAHSPPCAAGGGGAGA
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mRNA from alignment at P-wetherbeei_contig17292:22..690-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig17292.1.1 ID=mRNA_P-wetherbeei_contig17292.1.1|Name=mRNA_P-wetherbeei_contig17292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig17292:22..690- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGCGGTTTGCCATCGCGGAGGCCGGCTTCTTTCGGTACACGGCCTT
CAGCACGAACGACAGCGAGGCCTGGCACAATTATGCGGCGAGTCCTCTCG
CCTGCCTGCTTTATAATTTCGACTCATGCTTAGCATTGCTGATGCGGTCG
CGGCGCTGGAGGATAATATTTTATTTCTCATCAGGCACTCCGCCGCCGCC
GCCATGCTGCCAGGCATTCTTTACCATGGAGCGCGCCGCCATCAAAGCAG
CTGCTGCAACTGCCGCAGGCTGATCCACCGTTTCTGTTGTGGTATGCTAT
ACGTGTTGCCGCCACTGCCGCCACCATCGCTGACGCCGCCGGCGCCGGCT
CTTCTTAAGTTTAATCCACGTCACCTTCTATTCGTTCCCTGTCTCCTCTG
TACACCTTTCCTCGCTCCGCTCGTCCTCTTCCTTTTGCTCGCTGCCGTTG
TCTCCTCACGCTCAGGTATGCCGCTTTCTCGTCTACAACGACTACGACGG
CGCCCTCGACGCCTTCATCCGCGCTCTCGAGACCGATCCCCGCAATGGGC
GTGCCCGCGCCAACCTGGAAGCGCTCCTTCGGAATTTCCCCGAGAAATCC
GGGGGGGCGTCTGCCGGGGAGATGCTCATTCGCCACCATGCGCAGCAGGA
GGCGGAGGAGCGGGCGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig17292:22..690-

>mRNA_P-wetherbeei_contig17292.1.1 ID=mRNA_P-wetherbeei_contig17292.1.1|Name=mRNA_P-wetherbeei_contig17292.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=294bp|location=Sequence derived from alignment at P-wetherbeei_contig17292:22..690- (Phaeothamnion wetherbeei SAG_119_79)
CCGTGGCGGTTTGCCATCGCGGAGGCCGGCTTCTTTCGGTACACGGCCTT
CAGCACGAACGACAGCGAGGCCTGGCACAATTATGCGGCGAGTATGCCGC
TTTCTCGTCTACAACGACTACGACGGCGCCCTCGACGCCTTCATCCGCGC
TCTCGAGACCGATCCCCGCAATGGGCGTGCCCGCGCCAACCTGGAAGCGC
TCCTTCGGAATTTCCCCGAGAAATCCGGGGGGGCGTCTGCCGGGGAGATG
CTCATTCGCCACCATGCGCAGCAGGAGGCGGAGGAGCGGGCGCA
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